RLG00000010830

Bark storage protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000829
Physical Location & Seq
Reverse (-)
4638463 .. 4639465
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010830

Sequence Viewer

Length: 591 bp
ATGCAAACCCATCCTTTAACATTGCAGATGTGCTCATTCCTCAGTAGTAGTCCCATAGAGCTCTTTGGAATTGACAGAGATATAGAAACGGGCCTCAAGATGAACTACTCCTTGAATCACAAGGAGACTACACAAGAGAAATTGGCTATTTCAAATTATACAGTGAATGTGACAGGTGGCAGCTCATTTGATAATCTCTTATACAACATTTGGTATCAACCTGAAGAAGTCTTCCCTATTGATGGAACTCCAGAACAAAGACAGCATGCCTTCTGGGTTGCTGTTGATCCCTTCTACTATGAAATCTCCAAAAAGCTTGAGGATTTGAAGCTTGAGAGTTGCCTAAACTCAACCACATGTTTGCCCCATACCCCAAAAGTGGCTTTAGTCGAAAGGGGAGCAAGTGCCAACATTTTCCTGTCTAATGCTGCTTCCCAAAGGGTGCCTTTCATTGCAATCAGGGCTCTCTCTTCTGGTGTAACTGGTGGTGGCTCCGATGATCACACTGAAGCTGGCAAGTTCATTAGCCTTGCTTCGAAAAATTCAGTTACAGCTGTTGTGGAATTTATCAAACAGCTATCACTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

197

Amino Acids

21.7

Weight (kDa)

5.33

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 2 cut(s) 541, 563
AcuI CTGAAG 2 cut(s) 243, 528
AfiI CCNNNNNNNGG 2 cut(s) 242, 379
AflIII ACRYGT 1 cut(s) 356
AgsI TTSAA 3 cut(s) 115, 153, 328
AluBI AGCT 7 cut(s) 61, 183, 316, 331, 512, 554, 577
AluI AGCT 7 cut(s) 61, 183, 316, 331, 512, 554, 577
Alw21I GWGCWC 2 cut(s) 35, 63
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 281
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 180, 428
ApoI RAATTY 2 cut(s) 541, 563
AspS9I GGNCC 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 536
BanI GGYRCC 1 cut(s) 442
BanII GRGCYC 2 cut(s) 63, 466
BbsI GAAGAC 1 cut(s) 223
Bbv12I GWGCWC 2 cut(s) 35, 63
BbvI GCAGC 2 cut(s) 192, 415
BccI CCATC 2 cut(s) 18, 236
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 119
BisI GCNGC 2 cut(s) 181, 429
BlsI GCNGC 2 cut(s) 182, 430
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 444, 493
BpiI GAAGAC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 536
BpuEI CTTGAG 3 cut(s) 80, 338, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 379
Bse1I ACTGG 1 cut(s) 487
Bse3DI GCAATG 2 cut(s) 20, 450
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 242, 379
BseMI GCAATG 2 cut(s) 20, 450
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 487
BseXI GCAGC 2 cut(s) 192, 415
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 442
BsiHKAI GWGCWC 2 cut(s) 35, 63
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 242, 379
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 536
Bsp1286I GDGCHC 3 cut(s) 35, 63, 466
Bsp143I GATC 2 cut(s) 286, 499
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 444, 493
BspPI GGATC 1 cut(s) 281
BspT104I TTCGAA 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 442
BsrDI GCAATG 2 cut(s) 20, 450
BsrI ACTGG 1 cut(s) 487
BssMI GATC 2 cut(s) 286, 499
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 475
BstBI TTCGAA 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 267, 514
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 289, 502
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 286, 499
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNSI RCATGY 2 cut(s) 269, 360
BstV1I GCAGC 2 cut(s) 192, 415
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 168, 504
Cac8I GCNNGC 2 cut(s) 267, 514
Cfr13I GGNCC 1 cut(s) 91
CviAII CATG 2 cut(s) 266, 357
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 288, 501
DpnII GATC 2 cut(s) 286, 499
Eam1104I CTCTTC 1 cut(s) 475
EarI CTCTTC 1 cut(s) 475
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 2 cut(s) 63, 466
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 243, 528
EcoICRI GAGCTC 1 cut(s) 61
EcoT38I GRGCYC 2 cut(s) 63, 466
FaeI CATG 2 cut(s) 269, 360
FaiI YATR 8 cut(s) 56, 83, 159, 202, 267, 300, 358, 369
FalI AAGNNNNNCTT 2 cut(s) 430, 462
FaqI GGGAC 1 cut(s) 36
FatI CATG 2 cut(s) 265, 356
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 2 cut(s) 181, 429
FriOI GRGCYC 2 cut(s) 63, 466
Fsp4HI GCNGC 2 cut(s) 181, 429
GluI GCNGC 2 cut(s) 181, 429
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 93
Hin1II CATG 2 cut(s) 269, 360
HindIII AAGCTT 2 cut(s) 314, 329
HinfI GANTC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 2 cut(s) 97, 251
HpyAV CCTTC 2 cut(s) 280, 301
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 4, 25, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 2 cut(s) 269, 360
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 2 cut(s) 286, 499
LmnI GCTCC 2 cut(s) 398, 497
LpnPI CCDG 9 cut(s) 159, 234, 259, 264, 431, 445, 459, 468, 498
Lsp1109I GCAGC 2 cut(s) 192, 415
MaeIII GTNAC 3 cut(s) 169, 478, 547
MalI GATC 2 cut(s) 288, 501
MboI GATC 2 cut(s) 286, 499
MboII GAAGA 3 cut(s) 223, 236, 462
MhlI GDGCHC 3 cut(s) 35, 63, 466
MluCI AATT 5 cut(s) 69, 140, 154, 541, 563
MnlI CCTC 3 cut(s) 50, 104, 313
MseI TTAA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 554
MwoI GCNNNNNNNGC 1 cut(s) 461
NdeII GATC 2 cut(s) 286, 499
NlaIII CATG 2 cut(s) 269, 360
NlaIV GGNNCC 2 cut(s) 444, 493
NmuCI GTSAC 1 cut(s) 169
NspI RCATGY 2 cut(s) 269, 360
NspV TTCGAA 1 cut(s) 536
PaeI GCATGC 1 cut(s) 269
PciI ACATGT 1 cut(s) 356
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 182, 430
PscI ACATGT 1 cut(s) 356
Psp124BI GAGCTC 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 444, 493
PspPI GGNCC 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 554
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 2 cut(s) 181, 429
Sau3AI GATC 2 cut(s) 286, 499
Sau96I GGNCC 1 cut(s) 91
SduI GDGCHC 3 cut(s) 35, 63, 466
SetI ASST 9 cut(s) 63, 178, 185, 223, 318, 333, 514, 556, 579
SfuI TTCGAA 1 cut(s) 536
SmlI CTYRAG 3 cut(s) 95, 317, 332
SmoI CTYRAG 3 cut(s) 95, 317, 332
SphI GCATGC 1 cut(s) 269
Sse9I AATT 5 cut(s) 69, 140, 154, 541, 563
SstI GAGCTC 1 cut(s) 63
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 390, 536
TasI AATT 5 cut(s) 69, 140, 154, 541, 563
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 2 cut(s) 168, 511
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 2 cut(s) 180, 428
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 4 cut(s) 116, 315, 439, 511
TspRI CASTG 2 cut(s) 168, 511
XapI RAATTY 2 cut(s) 541, 563
XceI RCATGY 2 cut(s) 269, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.