Rmu_sc0035114.1_g000001
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035114.1
OG0000829
Physical Location & Seq
Forward (+)
1 .. 358
358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035114.1_g000001.1.cds

Sequence Viewer

Length: 297 bp
tggcgagagttcaaaggggacaatgctgcttaccacgacttgatatacaataagttcaacataactccggtggacatggaaagtgcttccgttgccttcatatgtcttcaacaaaaagtgcctttcattgtcatcagggctctctctgacttggccggcggtggctctgcgaattcgaatgaggctgatactttcatcgctcttgcttccaataattcagtcacagttcttttggaatttgtcaaacatttatcagctgttaatgtctcacgtaccgagcagcatctagctagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

98

Amino Acids

10.7

Weight (kDa)

5.44

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 2 cut(s) 172, 236
AfaI GTAC 1 cut(s) 274
AgsI TTSAA 3 cut(s) 13, 58, 110
AluBI AGCT 3 cut(s) 257, 290, 294
AluI AGCT 3 cut(s) 257, 290, 294
Alw26I GTCTC 1 cut(s) 271
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 26, 280
ApoI RAATTY 2 cut(s) 172, 236
AsuII TTCGAA 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 13, 292
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 3 cut(s) 287, 291, 295
BisI GCNGC 2 cut(s) 27, 281
BlsI GCNGC 2 cut(s) 28, 282
BmsI GCATC 1 cut(s) 292
BmtI GCTAGC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 98
Bpu14I TTCGAA 1 cut(s) 176
BsaAI YACGTR 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 155
BseXI GCAGC 2 cut(s) 13, 292
BshFI GGCC 1 cut(s) 155
BsiSI CCGG 2 cut(s) 68, 156
BslFI GGGAC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 155
BspOI GCTAGC 1 cut(s) 294
BspT104I TTCGAA 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 226
BstBAI YACGTR 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 157, 292
BstMAI GTCTC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstV1I GCAGC 2 cut(s) 13, 292
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 155
BtgZI GCGATG 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 157, 292
Cfr10I RCCGGY 1 cut(s) 155
Csp6I GTAC 1 cut(s) 273
CviAII CATG 1 cut(s) 76
CviJI RGCY 7 cut(s) 140, 155, 165, 185, 257, 290, 294
CviKI_1 RGCY 7 cut(s) 140, 155, 165, 185, 257, 290, 294
CviQI GTAC 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 1 cut(s) 79
FaiI YATR 5 cut(s) 46, 62, 77, 101, 103
FaqI GGGAC 1 cut(s) 32
FatI CATG 1 cut(s) 75
FauNDI CATATG 1 cut(s) 101
Fnu4HI GCNGC 2 cut(s) 27, 281
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 27, 281
FspBI CTAG 3 cut(s) 287, 291, 295
GluI GCNGC 2 cut(s) 27, 281
HaeIII GGCC 1 cut(s) 155
HapII CCGG 2 cut(s) 68, 156
Hin1II CATG 1 cut(s) 79
HpaII CCGG 2 cut(s) 68, 156
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 1 cut(s) 79
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 81, 121, 169
Lsp1109I GCAGC 2 cut(s) 13, 292
LweI GCATC 1 cut(s) 292
MaeI CTAG 3 cut(s) 287, 291, 295
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 3 cut(s) 172, 214, 236
MnlI CCTC 1 cut(s) 175
MroNI GCCGGC 1 cut(s) 155
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 2 cut(s) 68, 156
MwoI GCNNNNNNNGC 1 cut(s) 92
NaeI GCCGGC 1 cut(s) 157
NdeI CATATG 1 cut(s) 101
NgoMIV GCCGGC 1 cut(s) 155
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 220
NspV TTCGAA 1 cut(s) 176
PdiI GCCGGC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 28, 282
Ppu21I YACGTR 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 2 cut(s) 27, 281
SduI GDGCHC 1 cut(s) 142
SetI ASST 4 cut(s) 259, 274, 292, 296
SfaNI GCATC 1 cut(s) 292
SfuI TTCGAA 1 cut(s) 176
Sse9I AATT 3 cut(s) 172, 214, 236
SsiI CCGC 1 cut(s) 159
SspMI CTAG 3 cut(s) 287, 291, 295
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 176
TasI AATT 3 cut(s) 172, 214, 236
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 26, 280
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 88, 115, 184
TspGWI ACGGA 1 cut(s) 79
XapI RAATTY 2 cut(s) 172, 236
XspI CTAG 3 cut(s) 287, 291, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.