Rw6G039960
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000829
Physical Location & Seq
Forward (+)
63792437 .. 63793839
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039960.1

Sequence Viewer

Length: 525 bp
ATGACAGATAGAAGCTCATACGACAACCTGTTGAACAATATCTGGTATCAACCGGAGGAAGTCTTCCCCGTCGATGGAACTCCAGAACAAAGAGAGCACGCCTTTTGGATCCCTGTTGATCCATTCTACTATGAAGTTTCCCAAAAGCTAGAGGATGTGATATTGGAAGGTTGCCTAAACTCAACGACGTGTTTGTCACATACACCAAGAGTGGCAAGAGTCCAAAGGGGAATAAGTGCAAGCATTTACCTTGACAATGCTGCATATCGCGACTTCATATATGATAAGTTCAACATAACTCCGGTGGATATGGAAAGTGCTTCTGTTGCTTTGATATGTCTTCAACAAAAGGTGCCTTTCATTGTCATTAGAGCGCTCTCTGACTTGGCCGGTGGTGGCTCTGCAGATTCGAATGAGGCTGACACTTTCGTCACTCTTGCTTCCAACAATTCAGTCACAGTTCTTTTGGAATTTGTGAAACACTTATCTACTGCTACTATCTCATTGAGCAACATCAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

174

Amino Acids

19.39

Weight (kDa)

4.49

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 38 - 160 1e-12 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 193, 428
AccB1I GGYRCC 1 cut(s) 352
AccII CGCG 1 cut(s) 270
AclWI GGATC 3 cut(s) 103, 113, 116
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 1 cut(s) 470
AfeI AGCGCT 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 3 cut(s) 34, 292, 344
AjiI CACGTC 1 cut(s) 189
AluBI AGCT 2 cut(s) 15, 148
AluI AGCT 2 cut(s) 15, 148
Alw21I GWGCWC 1 cut(s) 99
AlwI GGATC 3 cut(s) 103, 113, 116
Aor51HI AGCGCT 1 cut(s) 375
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 470
AspLEI GCGC 1 cut(s) 376
AsuII TTCGAA 1 cut(s) 410
BamHI GGATCC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 352
BbsI GAAGAC 2 cut(s) 55, 332
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 68
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 402
BfoI RGCGCY 1 cut(s) 377
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmgBI CACGTC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 110, 354
BpiI GAAGAC 2 cut(s) 55, 332
BpmI CTGGAG 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 410
BsaWI WCCGGW 2 cut(s) 52, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 389
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 389
BshNI GGYRCC 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 3 cut(s) 53, 302, 390
BslI CCNNNNNNNGG 1 cut(s) 74
BsnI GGCC 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 108, 118
Bsp68I TCGCGA 1 cut(s) 270
BspANI GGCC 1 cut(s) 389
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 110, 354
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 3 cut(s) 103, 113, 116
BspT104I TTCGAA 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 389
BssMI GATC 2 cut(s) 108, 118
Bst4CI ACNGT 1 cut(s) 460
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 2 cut(s) 99, 241
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 2 cut(s) 111, 121
BstMBI GATC 2 cut(s) 108, 118
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 247
BstV2I GAAGAC 2 cut(s) 55, 332
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BsuRI GGCC 1 cut(s) 389
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 160
BtuMI TCGCGA 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 99, 241
CfoI GCGC 1 cut(s) 376
Cfr10I RCCGGY 1 cut(s) 389
CviJI RGCY 5 cut(s) 15, 148, 389, 399, 419
CviKI_1 RGCY 5 cut(s) 15, 148, 389, 399, 419
DpnI GATC 2 cut(s) 110, 120
DpnII GATC 2 cut(s) 108, 118
DrdI GACNNNNNNGTC 2 cut(s) 193, 428
DseDI GACNNNNNNGTC 2 cut(s) 193, 428
EaeI YGGCCR 1 cut(s) 387
Eco47III AGCGCT 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 375
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 1 cut(s) 389
HapII CCGG 3 cut(s) 53, 302, 390
HhaI GCGC 1 cut(s) 376
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HinfI GANTC 2 cut(s) 219, 407
HpaII CCGG 3 cut(s) 53, 302, 390
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 2 cut(s) 83, 269
Hpy99I CGWCG 2 cut(s) 74, 190
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 3 cut(s) 239, 263, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 188
HspAI GCGC 1 cut(s) 374
Kzo9I GATC 2 cut(s) 108, 118
LpnPI CCDG 7 cut(s) 28, 41, 66, 96, 126, 315, 403
Lsp1109I GCAGC 1 cut(s) 247
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 3 cut(s) 195, 430, 454
MalI GATC 2 cut(s) 110, 120
MboI GATC 2 cut(s) 108, 118
MboII GAAGA 2 cut(s) 55, 332
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 2 cut(s) 448, 470
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 3 cut(s) 49, 145, 409
MseI TTAA 1 cut(s) 523
MspI CCGG 3 cut(s) 53, 302, 390
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 2 cut(s) 108, 118
NlaIV GGNNCC 2 cut(s) 110, 354
NmuCI GTSAC 3 cut(s) 195, 430, 454
NruI TCGCGA 1 cut(s) 270
NspV TTCGAA 1 cut(s) 410
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 110, 354
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 108
RruI TCGCGA 1 cut(s) 270
SaqAI TTAA 1 cut(s) 523
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 2 cut(s) 108, 118
SchI GAGTC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 99
SetI ASST 7 cut(s) 17, 30, 150, 172, 191, 252, 354
SfcI CTRYAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 410
Sse9I AATT 2 cut(s) 448, 470
SspMI CTAG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 1 cut(s) 191
TaqI TCGA 2 cut(s) 72, 410
TasI AATT 2 cut(s) 448, 470
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 523
Tru9I TTAA 1 cut(s) 523
TseFI GTSAC 3 cut(s) 195, 430, 454
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 3 cut(s) 195, 430, 454
TspDTI ATGAA 3 cut(s) 147, 265, 349
XapI RAATTY 1 cut(s) 470
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.