RchiOBHm_Chr1g0336711
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000829
Physical Location & Seq
Reverse (-)
28425186 .. 28427394
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56465

Sequence Viewer

Length: 1197 bp
ATGAGTTTCACACTGGGTAACAAGTCACTGTCGTATGAGCACATCCCTTTGTTCTATAAATTTGGGCTCTTTCTGGCTACTATAATCTTGTGGTTCATATCTATCTACCTCTATCTTCGTTTGTGGCGCCCTGAATATATCAAAATGGGGGTAGCTTGGCCCTGCGTGGTTGTTTATGCTGTGAGCATCAGTTTGATGATGCTCAACGGAGCAAGTGCTGCACTTTCTAAAGAGACACTGGAATTGATAGCCAAGGCTAACGAGAATGGCCCTTATTTAGGCTTGGTCATTCCTAATTCTTTCGAGATGGATCCTCTCCTTCAATCTCCAAACTTCACTTCCTCTAATTTGACTATAGATTTTTCTGGAAGGAGATTTCGGTTTGGAACGATTACTGAAAAAAAAGTCATATTAGTCATGACCGGACTTGCCATGATTAATGCAGGAATAGCCACTCAGCTCTTGCTAAGCCTATTTGATATAGAAGGAGTGGTGCATTATGGCATAGCTGGCAATGCAAACCCAAGTCTCCATCTTGCAGATGTGGTCATTCCTCAGTATTGGGCCCATACTGCTCTTTGGAATTGGCAGAGATATGGAAATGGACCAGAAGATGAGCTACCCCTTGAATCACAAGGAGACTACACCAGAGACATTGGCTACTTAAAATTTGCAAATTATACAGTCAATGTGACAGATGGAAGCTCATACGACAACCTATTGAACAATATCTGGTATCAACCGGAGGAAGTCTTCCCCATCAATGGAACTCCAGAACAAAGAGAGCACGCCTTTTGGATCCCTGTTGATCCATTCTACTATAAAGTTTCCCAAAAGCTAGAGGATGTGATACTAGAAGGTTGCCTAAACTCAACGACGTGTTTGTCACATACACCAAGAGTGACAAGAGTCCAAAGGGGAACAAGTGCAAGCATTTACCTAGACAATGCTGCATATCGCGACTTCATATATCATGAGTTCAACATAACTCCGGTGGATATGGAAAGTGCTTCTGTTGCTTTAATATGTCTTCAGCAAAAGGTGCCTTTCATTGTCATCAGAGCACTCTCTGACTTGGCTGGTGGTGGGTCTGCAGATTCAAATGAGGCTGACACTTTCGTCACTCTTGCTTCCAATAATTCAGTCACAGTTCTTTTGGAATTTGTCAAACACTTATCTGCTGCTACTATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

398

Amino Acids

44.48

Weight (kDa)

5.05

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 94 - 390 4.4e-29 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 883, 1118
AccB1I GGYRCC 2 cut(s) 126, 1042
AccII CGCG 1 cut(s) 960
AclWI GGATC 5 cut(s) 305, 318, 793, 803, 806
AcsI RAATTY 3 cut(s) 59, 668, 1160
AcuI CTGAAG 1 cut(s) 1016
AcyI GRCGYC 1 cut(s) 127
AfiI CCNNNNNNNGG 2 cut(s) 278, 764
AflIII ACRYGT 1 cut(s) 878
AgsI TTSAA 5 cut(s) 323, 629, 724, 982, 1101
AjiI CACGTC 1 cut(s) 879
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AluBI AGCT 6 cut(s) 155, 460, 509, 619, 705, 838
AluI AGCT 6 cut(s) 155, 460, 509, 619, 705, 838
Alw21I GWGCWC 3 cut(s) 42, 789, 1066
Alw26I GTCTC 4 cut(s) 227, 533, 633, 645
AlwI GGATC 5 cut(s) 305, 318, 793, 803, 806
AoxI GGCC 3 cut(s) 158, 268, 564
ApaI GGGCCC 1 cut(s) 568
ApeKI GCWGC 3 cut(s) 218, 950, 1181
ApoI RAATTY 3 cut(s) 59, 668, 1160
AseI ATTAAT 1 cut(s) 438
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 5 cut(s) 159, 269, 564, 565, 605
AvaII GGWCC 1 cut(s) 605
BaeGI GKGCMC 1 cut(s) 568
BamHI GGATCC 2 cut(s) 310, 798
BanI GGYRCC 2 cut(s) 126, 1042
BanII GRGCYC 2 cut(s) 69, 568
BarI GAAGNNNNNNTAC 2 cut(s) 603, 635
BbsI GAAGAC 2 cut(s) 745, 1022
Bbv12I GWGCWC 3 cut(s) 42, 789, 1066
BbvI GCAGC 3 cut(s) 205, 937, 1168
BccI CCATC 4 cut(s) 301, 540, 692, 767
BcoDI GTCTC 4 cut(s) 227, 533, 633, 645
BfaI CTAG 3 cut(s) 839, 854, 941
BfmI CTRYAG 2 cut(s) 354, 1092
BfoI RGCGCY 1 cut(s) 130
BisI GCNGC 3 cut(s) 219, 951, 1182
BlpI GCTNAGC 1 cut(s) 467
BlsI GCNGC 3 cut(s) 220, 952, 1183
Bme18I GGWCC 1 cut(s) 605
BmgBI CACGTC 1 cut(s) 879
BmgT120I GGNCC 5 cut(s) 159, 269, 564, 565, 605
BmiI GGNNCC 5 cut(s) 128, 312, 566, 800, 1044
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 2 cut(s) 189, 195
BmuI ACTGGG 1 cut(s) 23
BoxI GACNNNNGTC 1 cut(s) 908
BpiI GAAGAC 2 cut(s) 745, 1022
BpmI CTGGAG 1 cut(s) 756
Bpu1102I GCTNAGC 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 3 cut(s) 422, 742, 991
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 764
Bse1I ACTGG 2 cut(s) 18, 243
Bse3DI GCAATG 1 cut(s) 520
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 42, 850
BseLI CCNNNNNNNGG 2 cut(s) 278, 764
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 470, 569
BseNI ACTGG 2 cut(s) 18, 243
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 3 cut(s) 205, 937, 1168
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 960
BshFI GGCC 3 cut(s) 160, 270, 566
BshNI GGYRCC 2 cut(s) 126, 1042
BsiHKAI GWGCWC 3 cut(s) 42, 789, 1066
BsiSI CCGG 3 cut(s) 423, 743, 992
BslI CCNNNNNNNGG 2 cut(s) 278, 764
BsmAI GTCTC 4 cut(s) 227, 533, 633, 645
BsnI GGCC 3 cut(s) 160, 270, 566
Bsp120I GGGCCC 1 cut(s) 564
Bsp1286I GDGCHC 5 cut(s) 42, 69, 568, 789, 1066
Bsp143I GATC 3 cut(s) 310, 798, 808
Bsp1720I GCTNAGC 1 cut(s) 467
Bsp68I TCGCGA 1 cut(s) 960
BspANI GGCC 3 cut(s) 160, 270, 566
BspCNI CTCAG 2 cut(s) 469, 568
BspFNI CGCG 1 cut(s) 960
BspHI TCATGA 3 cut(s) 417, 973, 1193
BspLI GGNNCC 5 cut(s) 128, 312, 566, 800, 1044
BspMAI CTGCAG 1 cut(s) 1096
BspPI GGATC 5 cut(s) 305, 318, 793, 803, 806
BspT107I GGYRCC 2 cut(s) 126, 1042
BsrDI GCAATG 1 cut(s) 520
BsrI ACTGG 2 cut(s) 18, 243
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 310, 798, 808
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 252
Bst4CI ACNGT 3 cut(s) 30, 685, 1150
BstACI GRCGYC 1 cut(s) 127
BstAPI GCANNNNNTGC 2 cut(s) 218, 1042
BstC8I GCNNGC 3 cut(s) 511, 789, 931
BstDEI CTNAG 3 cut(s) 456, 467, 555
BstENI CCTNNNNNAGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 42, 850
BstFNI CGCG 1 cut(s) 960
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 3 cut(s) 313, 801, 811
BstMAI GTCTC 4 cut(s) 227, 533, 633, 645
BstMBI GATC 3 cut(s) 310, 798, 808
BstMWI GCNNNNNNNGC 7 cut(s) 218, 449, 510, 515, 572, 1016, 1042
BstPAI GACNNNNGTC 1 cut(s) 908
BstSFI CTRYAG 2 cut(s) 354, 1092
BstSLI GKGCMC 1 cut(s) 568
BstUI CGCG 1 cut(s) 960
BstV1I GCAGC 3 cut(s) 205, 937, 1168
BstV2I GAAGAC 2 cut(s) 745, 1022
BstX2I RGATCY 2 cut(s) 310, 798
BstYI RGATCY 2 cut(s) 310, 798
BsuRI GGCC 3 cut(s) 160, 270, 566
BtrI CACGTC 1 cut(s) 879
BtsCI GGATG 2 cut(s) 42, 850
BtsIMutI CAGTG 3 cut(s) 11, 26, 236
BtuMI TCGCGA 1 cut(s) 960
Cac8I GCNNGC 3 cut(s) 511, 789, 931
CciI TCATGA 3 cut(s) 417, 973, 1193
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 5 cut(s) 159, 269, 564, 565, 605
CviAII CATG 4 cut(s) 418, 433, 974, 1194
DdeI CTNAG 3 cut(s) 456, 467, 555
DinI GGCGCC 1 cut(s) 128
DpnI GATC 3 cut(s) 312, 800, 810
DpnII GATC 3 cut(s) 310, 798, 808
DrdI GACNNNNNNGTC 2 cut(s) 883, 1118
DseDI GACNNNNNNGTC 2 cut(s) 883, 1118
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 2 cut(s) 69, 568
Eco47I GGWCC 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 1016
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 2 cut(s) 69, 568
EgeI GGCGCC 1 cut(s) 128
EheI GGCGCC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 4 cut(s) 421, 436, 977, 1197
FatI CATG 4 cut(s) 417, 432, 973, 1193
Fnu4HI GCNGC 3 cut(s) 219, 951, 1182
FokI GGATG 2 cut(s) 29, 857
FriOI GRGCYC 2 cut(s) 69, 568
Fsp4HI GCNGC 3 cut(s) 219, 951, 1182
FspBI CTAG 3 cut(s) 839, 854, 941
GlaI GCGC 1 cut(s) 128
GluI GCNGC 3 cut(s) 219, 951, 1182
GsuI CTGGAG 1 cut(s) 756
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 3 cut(s) 160, 270, 566
HapII CCGG 3 cut(s) 423, 743, 992
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 4 cut(s) 421, 436, 977, 1197
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HinfI GANTC 3 cut(s) 629, 909, 1097
HpaII CCGG 3 cut(s) 423, 743, 992
Hpy188I TCNGA 2 cut(s) 1061, 1072
Hpy188III TCNNGA 7 cut(s) 304, 366, 418, 773, 959, 974, 1194
Hpy99I CGWCG 1 cut(s) 880
HpyAV CCTTC 4 cut(s) 329, 363, 479, 851
HpyCH4III ACNGT 3 cut(s) 30, 685, 1150
HpyCH4IV ACGT 1 cut(s) 878
HpyCH4V TGCA 9 cut(s) 221, 443, 496, 518, 539, 674, 929, 953, 1094
HpyF10VI GCNNNNNNNGC 7 cut(s) 218, 449, 510, 515, 572, 1016, 1042
HpyF3I CTNAG 3 cut(s) 456, 467, 555
HpySE526I ACGT 1 cut(s) 878
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 4 cut(s) 421, 436, 977, 1197
HspAI GCGC 1 cut(s) 127
KasI GGCGCC 1 cut(s) 126
Kzo9I GATC 3 cut(s) 310, 798, 808
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 3 cut(s) 205, 937, 1168
LweI GCATC 2 cut(s) 189, 195
MaeI CTAG 3 cut(s) 839, 854, 941
MaeII ACGT 1 cut(s) 878
MaeIII GTNAC 7 cut(s) 17, 24, 691, 885, 901, 1120, 1144
MalI GATC 3 cut(s) 312, 800, 810
MboI GATC 3 cut(s) 310, 798, 808
MboII GAAGA 4 cut(s) 107, 623, 745, 1022
MflI RGATCY 2 cut(s) 310, 798
MhlI GDGCHC 5 cut(s) 42, 69, 568, 789, 1066
MluCI AATT 9 cut(s) 59, 242, 295, 346, 583, 668, 676, 1138, 1160
Mly113I GGCGCC 1 cut(s) 127
MlyI GAGTC 1 cut(s) 918
MnlI CCTC 7 cut(s) 119, 324, 352, 564, 739, 835, 1099
MseI TTAA 3 cut(s) 438, 665, 1022
MspI CCGG 3 cut(s) 423, 743, 992
MvnI CGCG 1 cut(s) 960
MwoI GCNNNNNNNGC 7 cut(s) 218, 449, 510, 515, 572, 1016, 1042
NarI GGCGCC 1 cut(s) 127
NdeII GATC 3 cut(s) 310, 798, 808
NlaIII CATG 4 cut(s) 421, 436, 977, 1197
NlaIV GGNNCC 5 cut(s) 128, 312, 566, 800, 1044
NmuCI GTSAC 6 cut(s) 24, 691, 885, 901, 1120, 1144
NruI TCGCGA 1 cut(s) 960
PagI TCATGA 3 cut(s) 417, 973, 1193
PfeI GAWTC 2 cut(s) 629, 1097
PkrI GCNGC 3 cut(s) 220, 952, 1183
PleI GAGTC 1 cut(s) 917
PluTI GGCGCC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 917
PshAI GACNNNNGTC 1 cut(s) 908
PshBI ATTAAT 1 cut(s) 438
PspN4I GGNNCC 5 cut(s) 128, 312, 566, 800, 1044
PspOMI GGGCCC 1 cut(s) 564
PspPI GGNCC 5 cut(s) 159, 269, 564, 565, 605
PstI CTGCAG 1 cut(s) 1096
PsuI RGATCY 2 cut(s) 310, 798
RruI TCGCGA 1 cut(s) 960
SaqAI TTAA 3 cut(s) 438, 665, 1022
SatI GCNGC 3 cut(s) 219, 951, 1182
Sau3AI GATC 3 cut(s) 310, 798, 808
Sau96I GGNCC 5 cut(s) 159, 269, 564, 565, 605
SchI GAGTC 1 cut(s) 918
SduI GDGCHC 5 cut(s) 42, 69, 568, 789, 1066
SfaNI GCATC 2 cut(s) 189, 195
SfcI CTRYAG 2 cut(s) 354, 1092
SfoI GGCGCC 1 cut(s) 128
SinI GGWCC 1 cut(s) 605
Sse9I AATT 9 cut(s) 59, 242, 295, 346, 583, 668, 676, 1138, 1160
SspDI GGCGCC 1 cut(s) 126
SspMI CTAG 3 cut(s) 839, 854, 941
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 3 cut(s) 30, 685, 1150
TaiI ACGT 1 cut(s) 881
TaqI TCGA 1 cut(s) 303
TasI AATT 9 cut(s) 59, 242, 295, 346, 583, 668, 676, 1138, 1160
TfiI GAWTC 2 cut(s) 629, 1097
Tru1I TTAA 3 cut(s) 438, 665, 1022
Tru9I TTAA 3 cut(s) 438, 665, 1022
TscAI CASTG 3 cut(s) 18, 33, 243
TseFI GTSAC 6 cut(s) 24, 691, 885, 901, 1120, 1144
TseI GCWGC 3 cut(s) 218, 950, 1181
Tsp45I GTSAC 6 cut(s) 24, 691, 885, 901, 1120, 1144
TspDTI ATGAA 3 cut(s) 85, 955, 1039
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 3 cut(s) 18, 33, 243
VpaK11BI GGWCC 1 cut(s) 605
VspI ATTAAT 1 cut(s) 438
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 3 cut(s) 59, 668, 1160
XspI CTAG 3 cut(s) 839, 854, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.