pre-mRNA-processing-splicing factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PRO8NT | PF08082 | 66 - 204 | 1.6e-74 | PRO8NT (NUC069), PrP8 N-terminal domain |
| PROCN | PF08083 | 394 - 799 | 2.7e-234 | PROCN (NUC071) domain |
| RRM_4 | PF10598 | 984 - 1074 | 2.5e-43 | RNA recognition motif of the spliceosomal PrP8 |
| U5_2-snRNA_bdg | PF10597 | 1236 - 1371 | 1.6e-74 | U5-snRNA binding site 2 of PrP8 |
| U6-snRNA_bdg | PF10596 | 1441 - 1599 | 1.4e-88 | U6-snRNA interacting domain of PrP8 |
| PRP8_domainIV | PF12134 | 1759 - 1988 | 1.6e-126 | PRP8 domain IV core |
| JAB | PF01398 | 2099 - 2197 | 2.5e-11 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease |
| PROCT | PF08084 | 2211 - 2328 | 1e-48 | PROCT (NUC072) domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 890, 1554, 1776, 5648 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 335 |
| AatII | GACGTC | 2 cut(s) | 4204, 6677 |
| Acc36I | ACCTGC | 1 cut(s) | 1548 |
| Acc65I | GGTACC | 1 cut(s) | 38 |
| AccB1I | GGYRCC | 3 cut(s) | 38, 97, 6439 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1874, 4786, 5408 |
| AccBSI | CCGCTC | 3 cut(s) | 2842, 5213, 6038 |
| AccI | GTMKAC | 1 cut(s) | 5352 |
| AccII | CGCG | 7 cut(s) | 1609, 1920, 2113, 3579, 4249, 5972, 6225 |
| AccIII | TCCGGA | 2 cut(s) | 4311, 6487 |
| AcoI | YGGCCR | 3 cut(s) | 1998, 3395, 4907 |
| AcsI | RAATTY | 9 cut(s) | 187, 866, 1528, 2456, 3293, 4130, 4242, 5045, 5699 |
| AcuI | CTGAAG | 2 cut(s) | 1278, 5544 |
| AcyI | GRCGYC | 4 cut(s) | 98, 1981, 4201, 6674 |
| AdeI | CACNNNGTG | 2 cut(s) | 4010, 6865 |
| AflII | CTTAAG | 3 cut(s) | 260, 5453, 5687 |
| AflIII | ACRYGT | 6 cut(s) | 241, 792, 5070, 5220, 5868, 6641 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5071 |
| AhlI | ACTAGT | 2 cut(s) | 2897, 3130 |
| AjiI | CACGTC | 3 cut(s) | 331, 663, 1967 |
| AleI | CACNNNNGTG | 2 cut(s) | 2133, 6588 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 4465, 4497, 6482, 6514 |
| Alw21I | GWGCWC | 7 cut(s) | 259, 1296, 1448, 3849, 4458, 4735, 5824 |
| Alw26I | GTCTC | 8 cut(s) | 1786, 2521, 3227, 3523, 4826, 5553, 6060, 6486 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1193 |
| Ama87I | CYCGRG | 2 cut(s) | 134, 3162 |
| Aor13HI | TCCGGA | 2 cut(s) | 4311, 6487 |
| ApoI | RAATTY | 9 cut(s) | 187, 866, 1528, 2456, 3293, 4130, 4242, 5045, 5699 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 2626, 2658, 4186, 4218, 5764, 5796, 6782, 6814 |
| AseI | ATTAAT | 2 cut(s) | 1046, 4623 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2458, 3512 |
| Asp718I | GGTACC | 1 cut(s) | 38 |
| AspLEI | GCGC | 7 cut(s) | 100, 1092, 2113, 2793, 5493, 6225, 6227 |
| AsuC2I | CCSGG | 3 cut(s) | 326, 3181, 6657 |
| AsuII | TTCGAA | 1 cut(s) | 6358 |
| AvaI | CYCGRG | 2 cut(s) | 134, 3162 |
| AxyI | CCTNAGG | 2 cut(s) | 1386, 6251 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 3213, 3246, 5334, 5367 |
| BalI | TGGCCA | 3 cut(s) | 2000, 3397, 4909 |
| BamHI | GGATCC | 3 cut(s) | 1012, 5605, 6200 |
| BanI | GGYRCC | 3 cut(s) | 38, 97, 6439 |
| BanII | GRGCYC | 5 cut(s) | 507, 1888, 3849, 6519, 6662 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 326, 358, 2272, 2304 |
| BauI | CACGAG | 2 cut(s) | 4073, 6588 |
| BbsI | GAAGAC | 4 cut(s) | 861, 3445, 3467, 4230 |
| Bbv12I | GWGCWC | 7 cut(s) | 259, 1296, 1448, 3849, 4458, 4735, 5824 |
| BceAI | ACGGC | 4 cut(s) | 111, 1620, 6460, 6728 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1394, 1428, 6173, 6207 |
| BciVI | GTATCC | 3 cut(s) | 3214, 6293, 6522 |
| BclI | TGATCA | 4 cut(s) | 79, 639, 2761, 4954 |
| BcnI | CCSGG | 3 cut(s) | 326, 3181, 6657 |
| BcoDI | GTCTC | 8 cut(s) | 1786, 2521, 3227, 3523, 4826, 5553, 6060, 6486 |
| BcuI | ACTAGT | 2 cut(s) | 2897, 3130 |
| BfmI | CTRYAG | 8 cut(s) | 1185, 2820, 3095, 3644, 3672, 5271, 6117, 6877 |
| BfoI | RGCGCY | 3 cut(s) | 101, 2794, 5494 |
| BfrI | CTTAAG | 3 cut(s) | 260, 5453, 5687 |
| BfuAI | ACCTGC | 1 cut(s) | 1548 |
| BfuI | GTATCC | 3 cut(s) | 3214, 6293, 6522 |
| BglII | AGATCT | 2 cut(s) | 3139, 5950 |
| BmcAI | AGTACT | 2 cut(s) | 4785, 4976 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5071 |
| BmeT110I | CYCGRG | 2 cut(s) | 134, 3162 |
| BmgBI | CACGTC | 3 cut(s) | 331, 663, 1967 |
| BmrI | ACTGGG | 2 cut(s) | 706, 3226 |
| BmuI | ACTGGG | 2 cut(s) | 706, 3226 |
| BpiI | GAAGAC | 4 cut(s) | 861, 3445, 3467, 4230 |
| BpmI | CTGGAG | 9 cut(s) | 314, 375, 1287, 2756, 2909, 4232, 5648, 6617, 6926 |
| Bpu10I | CCTNAGC | 2 cut(s) | 25, 4185 |
| Bpu14I | TTCGAA | 1 cut(s) | 6358 |
| BpuEI | CTTGAG | 9 cut(s) | 176, 1550, 2330, 2543, 4472, 5163, 5633, 6393, 6805 |
| BpuMI | CCSGG | 3 cut(s) | 326, 3181, 6657 |
| BsaAI | YACGTR | 4 cut(s) | 3075, 5221, 5830, 6271 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2754, 3435 |
| BsaHI | GRCGYC | 4 cut(s) | 98, 1981, 4201, 6674 |
| BsaI | GGTCTC | 1 cut(s) | 5553 |
| BsaWI | WCCGGW | 2 cut(s) | 4311, 6487 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1174, 1204 |
| Bse118I | RCCGGY | 1 cut(s) | 1485 |
| Bse21I | CCTNAGG | 2 cut(s) | 1386, 6251 |
| Bse3DI | GCAATG | 3 cut(s) | 2088, 5190, 6617 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2754, 3435 |
| BseAI | TCCGGA | 2 cut(s) | 4311, 6487 |
| BseJI | GATNNNNATC | 2 cut(s) | 2754, 3435 |
| BseMI | GCAATG | 3 cut(s) | 2088, 5190, 6617 |
| BsePI | GCGCGC | 1 cut(s) | 6223 |
| BseRI | GAGGAG | 5 cut(s) | 21, 515, 4091, 4541, 6974 |
| BseYI | CCCAGC | 1 cut(s) | 5480 |
| BsgI | GTGCAG | 6 cut(s) | 1355, 1526, 2568, 4676, 4844, 5520 |
| Bsh1236I | CGCG | 7 cut(s) | 1609, 1920, 2113, 3579, 4249, 5972, 6225 |
| Bsh1285I | CGRYCG | 1 cut(s) | 6979 |
| BshNI | GGYRCC | 3 cut(s) | 38, 97, 6439 |
| BsiEI | CGRYCG | 1 cut(s) | 6979 |
| BsiHKAI | GWGCWC | 7 cut(s) | 259, 1296, 1448, 3849, 4458, 4735, 5824 |
| BsiHKCI | CYCGRG | 2 cut(s) | 134, 3162 |
| BsiSI | CCGG | 9 cut(s) | 325, 1486, 1648, 3180, 4312, 6398, 6488, 6656, 6696 |
| BsiWI | CGTACG | 1 cut(s) | 6180 |
| BslFI | GGGAC | 6 cut(s) | 341, 2162, 2906, 3105, 6629, 6723 |
| BsmAI | GTCTC | 8 cut(s) | 1786, 2521, 3227, 3523, 4826, 5553, 6060, 6486 |
| BsmBI | CGTCTC | 3 cut(s) | 3523, 6060, 6486 |
| BsmFI | GGGAC | 6 cut(s) | 341, 2162, 2906, 3105, 6629, 6723 |
| BsmI | GAATGC | 3 cut(s) | 480, 5131, 6194 |
| Bso31I | GGTCTC | 1 cut(s) | 5553 |
| BsoBI | CYCGRG | 2 cut(s) | 134, 3162 |
| Bsp119I | TTCGAA | 1 cut(s) | 6358 |
| Bsp13I | TCCGGA | 2 cut(s) | 4311, 6487 |
| Bsp1407I | TGTACA | 3 cut(s) | 939, 996, 3525 |
| Bsp19I | CCATGG | 2 cut(s) | 2168, 4118 |
| BspEI | TCCGGA | 2 cut(s) | 4311, 6487 |
| BspFNI | CGCG | 7 cut(s) | 1609, 1920, 2113, 3579, 4249, 5972, 6225 |
| BspHI | TCATGA | 3 cut(s) | 2617, 3807, 5196 |
| BspMAI | CTGCAG | 5 cut(s) | 2824, 3099, 3648, 3676, 6121 |
| BspMI | ACCTGC | 1 cut(s) | 1548 |
| BspQI | GCTCTTC | 2 cut(s) | 2574, 5829 |
| BspT104I | TTCGAA | 1 cut(s) | 6358 |
| BspT107I | GGYRCC | 3 cut(s) | 38, 97, 6439 |
| BspTI | CTTAAG | 3 cut(s) | 260, 5453, 5687 |
| BspTNI | GGTCTC | 1 cut(s) | 5553 |
| BsrBI | CCGCTC | 3 cut(s) | 2842, 5213, 6038 |
| BsrDI | GCAATG | 3 cut(s) | 2088, 5190, 6617 |
| BsrFI | RCCGGY | 1 cut(s) | 1485 |
| BsrGI | TGTACA | 3 cut(s) | 939, 996, 3525 |
| BssAI | RCCGGY | 1 cut(s) | 1485 |
| BssHII | GCGCGC | 1 cut(s) | 6223 |
| BssNAI | GTATAC | 1 cut(s) | 5353 |
| BssNI | GRCGYC | 4 cut(s) | 98, 1981, 4201, 6674 |
| BssSI | CACGAG | 2 cut(s) | 4073, 6588 |
| BssT1I | CCWWGG | 8 cut(s) | 1590, 2168, 3151, 3495, 4118, 4941, 5494, 6900 |
| Bst1107I | GTATAC | 1 cut(s) | 5353 |
| Bst2BI | CACGAG | 2 cut(s) | 4073, 6588 |
| BstACI | GRCGYC | 4 cut(s) | 98, 1981, 4201, 6674 |
| BstAFI | CTTAAG | 3 cut(s) | 260, 5453, 5687 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4163 |
| BstAUI | TGTACA | 3 cut(s) | 939, 996, 3525 |
| BstBAI | YACGTR | 4 cut(s) | 3075, 5221, 5830, 6271 |
| BstBI | TTCGAA | 1 cut(s) | 6358 |
| BstDSI | CCRYGG | 5 cut(s) | 2168, 3479, 4118, 4844, 6742 |
| BstEII | GGTNACC | 2 cut(s) | 6746, 6968 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2135 |
| BstFNI | CGCG | 7 cut(s) | 1609, 1920, 2113, 3579, 4249, 5972, 6225 |
| BstH2I | RGCGCY | 3 cut(s) | 101, 2794, 5494 |
| BstHHI | GCGC | 7 cut(s) | 100, 1092, 2113, 2793, 5493, 6225, 6227 |
| BstMAI | GTCTC | 8 cut(s) | 1786, 2521, 3227, 3523, 4826, 5553, 6060, 6486 |
| BstMCI | CGRYCG | 1 cut(s) | 6979 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 804, 2638, 2839, 4163, 5275, 6101, 6233, 6547 |
| BstNSI | RCATGY | 6 cut(s) | 763, 796, 3562, 5074, 5872, 6645 |
| BstPI | GGTNACC | 2 cut(s) | 6746, 6968 |
| BstSFI | CTRYAG | 8 cut(s) | 1185, 2820, 3095, 3644, 3672, 5271, 6117, 6877 |
| BstSNI | TACGTA | 1 cut(s) | 3075 |
| BstUI | CGCG | 7 cut(s) | 1609, 1920, 2113, 3579, 4249, 5972, 6225 |
| BstV2I | GAAGAC | 4 cut(s) | 861, 3445, 3467, 4230 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 353, 4430, 5050 |
| BstZ17I | GTATAC | 1 cut(s) | 5353 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1386, 6251 |
| BsuI | GTATCC | 3 cut(s) | 3214, 6293, 6522 |
| BtgI | CCRYGG | 5 cut(s) | 2168, 3479, 4118, 4844, 6742 |
| BtrI | CACGTC | 3 cut(s) | 331, 663, 1967 |
| BtsI | GCAGTG | 1 cut(s) | 5787 |
| BveI | ACCTGC | 1 cut(s) | 1548 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1193 |
| CciI | TCATGA | 3 cut(s) | 2617, 3807, 5196 |
| CfoI | GCGC | 7 cut(s) | 100, 1092, 2113, 2793, 5493, 6225, 6227 |
| Cfr10I | RCCGGY | 1 cut(s) | 1485 |
| CpoI | CGGWCCG | 1 cut(s) | 4314 |
| CseI | GACGC | 6 cut(s) | 1970, 2630, 3332, 4216, 6626, 6697 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1977, 2012 |
| CspI | CGGWCCG | 1 cut(s) | 4314 |
| DinI | GGCGCC | 1 cut(s) | 99 |
| DraI | TTTAAA | 2 cut(s) | 3292, 4468 |
| DraIII | CACNNNGTG | 2 cut(s) | 4010, 6865 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 335 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5071 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 335 |
| EaeI | YGGCCR | 3 cut(s) | 1998, 3395, 4907 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5071 |
| EciI | GGCGGA | 2 cut(s) | 5125, 6384 |
| Ecl136II | GAGCTC | 1 cut(s) | 3847 |
| Eco105I | TACGTA | 1 cut(s) | 3075 |
| Eco130I | CCWWGG | 8 cut(s) | 1590, 2168, 3151, 3495, 4118, 4941, 5494, 6900 |
| Eco147I | AGGCCT | 2 cut(s) | 3196, 3804 |
| Eco24I | GRGCYC | 5 cut(s) | 507, 1888, 3849, 6519, 6662 |
| Eco31I | GGTCTC | 1 cut(s) | 5553 |
| Eco53kI | GAGCTC | 1 cut(s) | 3847 |
| Eco57I | CTGAAG | 2 cut(s) | 1278, 5544 |
| Eco81I | CCTNAGG | 2 cut(s) | 1386, 6251 |
| Eco88I | CYCGRG | 2 cut(s) | 134, 3162 |
| Eco91I | GGTNACC | 2 cut(s) | 6746, 6968 |
| EcoICRI | GAGCTC | 1 cut(s) | 3847 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2135 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2176 |
| EcoO65I | GGTNACC | 2 cut(s) | 6746, 6968 |
| EcoRI | GAATTC | 1 cut(s) | 4242 |
| EcoT14I | CCWWGG | 8 cut(s) | 1590, 2168, 3151, 3495, 4118, 4941, 5494, 6900 |
| EcoT22I | ATGCAT | 3 cut(s) | 2067, 6347, 6632 |
| EcoT38I | GRGCYC | 5 cut(s) | 507, 1888, 3849, 6519, 6662 |
| EgeI | GGCGCC | 1 cut(s) | 99 |
| EheI | GGCGCC | 1 cut(s) | 99 |
| ErhI | CCWWGG | 8 cut(s) | 1590, 2168, 3151, 3495, 4118, 4941, 5494, 6900 |
| Esp3I | CGTCTC | 3 cut(s) | 3523, 6060, 6486 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2780, 2812 |
| FaqI | GGGAC | 6 cut(s) | 341, 2162, 2906, 3105, 6629, 6723 |
| FauI | CCCGC | 6 cut(s) | 82, 1245, 3681, 3959, 4140, 5218 |
| FauNDI | CATATG | 4 cut(s) | 2392, 2888, 4291, 5327 |
| FbaI | TGATCA | 4 cut(s) | 79, 639, 2761, 4954 |
| FblI | GTMKAC | 1 cut(s) | 5352 |
| FriOI | GRGCYC | 5 cut(s) | 507, 1888, 3849, 6519, 6662 |
| GlaI | GCGC | 7 cut(s) | 99, 1091, 2112, 2792, 5492, 6224, 6226 |
| GsaI | CCCAGC | 1 cut(s) | 5484 |
| GsuI | CTGGAG | 9 cut(s) | 314, 375, 1287, 2756, 2909, 4232, 5648, 6617, 6926 |
| HaeII | RGCGCY | 3 cut(s) | 101, 2794, 5494 |
| HapII | CCGG | 9 cut(s) | 325, 1486, 1648, 3180, 4312, 6398, 6488, 6656, 6696 |
| HgaI | GACGC | 6 cut(s) | 1970, 2630, 3332, 4216, 6626, 6697 |
| HhaI | GCGC | 7 cut(s) | 100, 1092, 2113, 2793, 5493, 6225, 6227 |
| Hin1I | GRCGYC | 4 cut(s) | 98, 1981, 4201, 6674 |
| Hin6I | GCGC | 7 cut(s) | 98, 1090, 2111, 2791, 5491, 6223, 6225 |
| HinP1I | GCGC | 7 cut(s) | 98, 1090, 2111, 2791, 5491, 6223, 6225 |
| HincII | GTYRAC | 4 cut(s) | 690, 2331, 3756, 6259 |
| HindII | GTYRAC | 4 cut(s) | 690, 2331, 3756, 6259 |
| HindIII | AAGCTT | 6 cut(s) | 152, 884, 1340, 2601, 3005, 3609 |
| HpaII | CCGG | 9 cut(s) | 325, 1486, 1648, 3180, 4312, 6398, 6488, 6656, 6696 |
| Hpy99I | CGWCG | 4 cut(s) | 47, 124, 462, 6481 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 804, 2638, 2839, 4163, 5275, 6101, 6233, 6547 |
| Hsp92I | GRCGYC | 4 cut(s) | 98, 1981, 4201, 6674 |
| HspAI | GCGC | 7 cut(s) | 98, 1090, 2111, 2791, 5491, 6223, 6225 |
| KasI | GGCGCC | 1 cut(s) | 97 |
| Kpn2I | TCCGGA | 2 cut(s) | 4311, 6487 |
| KpnI | GGTACC | 1 cut(s) | 42 |
| KroI | GCCGGC | 1 cut(s) | 1485 |
| KroNI | GCCGGC | 1 cut(s) | 1487 |
| Ksp22I | TGATCA | 4 cut(s) | 79, 639, 2761, 4954 |
| LguI | GCTCTTC | 2 cut(s) | 2574, 5829 |
| MbiI | CCGCTC | 3 cut(s) | 2842, 5213, 6038 |
| MfeI | CAATTG | 4 cut(s) | 1712, 1754, 2196, 2806 |
| MlsI | TGGCCA | 3 cut(s) | 2000, 3397, 4909 |
| MluNI | TGGCCA | 3 cut(s) | 2000, 3397, 4909 |
| Mly113I | GGCGCC | 1 cut(s) | 98 |
| Mox20I | TGGCCA | 3 cut(s) | 2000, 3397, 4909 |
| Mph1103I | ATGCAT | 3 cut(s) | 2067, 6347, 6632 |
| MroI | TCCGGA | 2 cut(s) | 4311, 6487 |
| MroNI | GCCGGC | 1 cut(s) | 1485 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2458, 3512 |
| MscI | TGGCCA | 3 cut(s) | 2000, 3397, 4909 |
| MslI | CAYNNNNRTG | 8 cut(s) | 986, 2133, 2146, 3710, 4758, 6150, 6269, 6588 |
| Msp20I | TGGCCA | 3 cut(s) | 2000, 3397, 4909 |
| MspA1I | CMGCKG | 4 cut(s) | 77, 2402, 2552, 4147 |
| MspCI | CTTAAG | 3 cut(s) | 260, 5453, 5687 |
| MspI | CCGG | 9 cut(s) | 325, 1486, 1648, 3180, 4312, 6398, 6488, 6656, 6696 |
| MunI | CAATTG | 4 cut(s) | 1712, 1754, 2196, 2806 |
| Mva1269I | GAATGC | 3 cut(s) | 480, 5131, 6194 |
| MvnI | CGCG | 7 cut(s) | 1609, 1920, 2113, 3579, 4249, 5972, 6225 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 804, 2638, 2839, 4163, 5275, 6101, 6233, 6547 |
| NaeI | GCCGGC | 1 cut(s) | 1487 |
| NarI | GGCGCC | 1 cut(s) | 98 |
| NciI | CCSGG | 3 cut(s) | 326, 3181, 6657 |
| NcoI | CCATGG | 2 cut(s) | 2168, 4118 |
| NdeI | CATATG | 4 cut(s) | 2392, 2888, 4291, 5327 |
| NgoMIV | GCCGGC | 1 cut(s) | 1485 |
| NmeAIII | GCCGAG | 2 cut(s) | 1198, 1228 |
| NsiI | ATGCAT | 3 cut(s) | 2067, 6347, 6632 |
| NspI | RCATGY | 6 cut(s) | 763, 796, 3562, 5074, 5872, 6645 |
| NspV | TTCGAA | 1 cut(s) | 6358 |
| OliI | CACNNNNGTG | 2 cut(s) | 2133, 6588 |
| PaeR7I | CTCGAG | 1 cut(s) | 3162 |
| PagI | TCATGA | 3 cut(s) | 2617, 3807, 5196 |
| PasI | CCCWGGG | 2 cut(s) | 312, 6520 |
| PauI | GCGCGC | 1 cut(s) | 6223 |
| PceI | AGGCCT | 2 cut(s) | 3196, 3804 |
| PciI | ACATGT | 4 cut(s) | 792, 5070, 5868, 6641 |
| PciSI | GCTCTTC | 2 cut(s) | 2574, 5829 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2332 |
| PctI | GAATGC | 3 cut(s) | 480, 5131, 6194 |
| PdiI | GCCGGC | 1 cut(s) | 1487 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2458, 3512 |
| Pfl23II | CGTACG | 1 cut(s) | 6180 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1874, 4786, 5408 |
| PfoI | TCCNGGA | 2 cut(s) | 291, 324 |
| Ple19I | CGATCG | 1 cut(s) | 6979 |
| PluTI | GGCGCC | 1 cut(s) | 101 |
| Ppu21I | YACGTR | 4 cut(s) | 3075, 5221, 5830, 6271 |
| PpuMI | RGGWCCY | 1 cut(s) | 2176 |
| PscI | ACATGT | 4 cut(s) | 792, 5070, 5868, 6641 |
| PshBI | ATTAAT | 2 cut(s) | 1046, 4623 |
| PsiI | TTATAA | 4 cut(s) | 890, 1554, 1776, 5648 |
| Psp124BI | GAGCTC | 1 cut(s) | 3849 |
| Psp5II | RGGWCCY | 1 cut(s) | 2176 |
| PspEI | GGTNACC | 2 cut(s) | 6746, 6968 |
| PspFI | CCCAGC | 1 cut(s) | 5480 |
| PspLI | CGTACG | 1 cut(s) | 6180 |
| PspPPI | RGGWCCY | 1 cut(s) | 2176 |
| PspXI | VCTCGAGB | 1 cut(s) | 3162 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 31, 63 |
| PstI | CTGCAG | 5 cut(s) | 2824, 3099, 3648, 3676, 6121 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1193 |
| PteI | GCGCGC | 1 cut(s) | 6223 |
| PvuI | CGATCG | 1 cut(s) | 6979 |
| PvuII | CAGCTG | 1 cut(s) | 2552 |
| RseI | CAYNNNNRTG | 8 cut(s) | 986, 2133, 2146, 3710, 4758, 6150, 6269, 6588 |
| Rsr2I | CGGWCCG | 1 cut(s) | 4314 |
| RsrII | CGGWCCG | 1 cut(s) | 4314 |
| SacI | GAGCTC | 1 cut(s) | 3849 |
| SapI | GCTCTTC | 2 cut(s) | 2574, 5829 |
| ScaI | AGTACT | 2 cut(s) | 4785, 4976 |
| SfcI | CTRYAG | 8 cut(s) | 1185, 2820, 3095, 3644, 3672, 5271, 6117, 6877 |
| SfoI | GGCGCC | 1 cut(s) | 99 |
| Sfr274I | CTCGAG | 1 cut(s) | 3162 |
| SfuI | TTCGAA | 1 cut(s) | 6358 |
| SlaI | CTCGAG | 1 cut(s) | 3162 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 986, 2133, 2146, 3710, 4758, 6150, 6269, 6588 |
| SnaBI | TACGTA | 1 cut(s) | 3075 |
| SpeI | ACTAGT | 2 cut(s) | 2897, 3130 |
| SseBI | AGGCCT | 2 cut(s) | 3196, 3804 |
| SspDI | GGCGCC | 1 cut(s) | 97 |
| SspI | AATATT | 1 cut(s) | 5310 |
| SstI | GAGCTC | 1 cut(s) | 3849 |
| StuI | AGGCCT | 2 cut(s) | 3196, 3804 |
| StyI | CCWWGG | 8 cut(s) | 1590, 2168, 3151, 3495, 4118, 4941, 5494, 6900 |
| TaqII | GACCGA | 1 cut(s) | 4331 |
| TatI | WGTACW | 9 cut(s) | 594, 915, 939, 996, 1779, 3525, 4783, 4974, 5256 |
| TauI | GCSGC | 2 cut(s) | 2836, 5734 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1874, 4786, 5408 |
| Vha464I | CTTAAG | 3 cut(s) | 260, 5453, 5687 |
| VspI | ATTAAT | 2 cut(s) | 1046, 4623 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2135 |
| XapI | RAATTY | 9 cut(s) | 187, 866, 1528, 2456, 3293, 4130, 4242, 5045, 5699 |
| XbaI | TCTAGA | 4 cut(s) | 511, 547, 1936, 2450 |
| XceI | RCATGY | 6 cut(s) | 763, 796, 3562, 5074, 5872, 6645 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 1688, 4037, 4058, 4376, 5895 |
| XhoI | CTCGAG | 1 cut(s) | 3162 |
| XmiI | GTMKAC | 1 cut(s) | 5352 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2458, 3512 |
| ZraI | GACGTC | 2 cut(s) | 4202, 6675 |
| ZrmI | AGTACT | 2 cut(s) | 4785, 4976 |
| Zsp2I | ATGCAT | 3 cut(s) | 2067, 6347, 6632 |