pycom17g21780

pre-mRNA-processing-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000798
Physical Location & Seq
Forward (+)
20227319 .. 20228262
944 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g21780.1

Sequence Viewer

Length: 693 bp
ATGCCTAAGAACATTTTGAAAAAGTTCATCTGCATTGCGGATCTGAGGACGCAAATAGCTGGTTACTTGTATGGCATAAGCCCACCCGACAACCCTCAGGTCAAGGAAATCCGCTGCATTGCAATGCCACCACAATGGGGGACCCACCAACAAGTTCATCTTCCATCAGCTCTTCCTGATCATGATTTCCTCAACGATTTGGAGCCTCTGGGATGGATGCACACGCAGCCAAATGAGCTTCCTCAGCTTTCTCCTCAGGATCTCACTTCTCATGCCAAGATTTTAGAGAACACCAAGCAATGGGATGGGGAGAAATGCATCATTTTAACCTGCAGTTTCACTCCAGGTTCCTGCTCTTTAACCGCATACAAACTTACTCCATCTGGTTATGAATGGGGACGTGTCAATAAAGACACAGGAAGCAATCCTCATGGATACCTTCCCACTCATTACGAGAAGGTTCAGATGCTTCTCAGTGACCGCTTCCTTGGTTTCTATATGATTCCGGACACTGGTCCATGGAACTACAACTTCATGGGGGTGAAGCATACACCTAGCATGAAGTACGGCATCAAGCTTGGAACACCCAGGGAGTACTATCACGAGGACCACAGGCCGACCCATTACCTTGAGTTCAGCAACCTGGAGGAGGGTGACACGGTGGAAGGAGATCGCGATGACACTTTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000380 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

231

Amino Acids

26.36

Weight (kDa)

5.72

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 3 - 94 1.3e-11 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
PROCT PF08084 107 - 227 2.9e-50 PROCT (NUC072) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 300
AccII CGCG 1 cut(s) 675
AccIII TCCGGA 1 cut(s) 505
AciI CCGC 4 cut(s) 38, 112, 363, 481
AclWI GGATC 2 cut(s) 48, 267
AfaI GTAC 2 cut(s) 566, 596
AfiI CCNNNNNNNGG 4 cut(s) 137, 300, 512, 649
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 1 cut(s) 19
AjiI CACGTC 1 cut(s) 401
AjnI CCWGG 3 cut(s) 343, 587, 642
AluBI AGCT 5 cut(s) 59, 170, 238, 247, 577
AluI AGCT 5 cut(s) 59, 170, 238, 247, 577
AlwI GGATC 2 cut(s) 48, 267
Aor13HI TCCGGA 1 cut(s) 505
AoxI GGCC 1 cut(s) 614
ApeKI GCWGC 2 cut(s) 114, 226
Asp700I GAANNNNTTC 1 cut(s) 23
AspS9I GGNCC 3 cut(s) 141, 515, 607
AsuHPI GGTGA 2 cut(s) 553, 665
AvaII GGWCC 3 cut(s) 141, 515, 607
AxyI CCTNAGG 2 cut(s) 96, 255
BauI CACGAG 1 cut(s) 602
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 101, 238
BccI CCATC 4 cut(s) 172, 207, 299, 388
BceAI ACGGC 1 cut(s) 583
BciT130I CCWGG 3 cut(s) 345, 589, 644
BciVI GTATCC 1 cut(s) 428
BclI TGATCA 1 cut(s) 178
BfaI CTAG 1 cut(s) 555
BfmI CTRYAG 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 338
BfuI GTATCC 1 cut(s) 428
BisI GCNGC 2 cut(s) 115, 227
BlsI GCNGC 2 cut(s) 116, 228
BmcAI AGTACT 1 cut(s) 596
Bme1390I CCNGG 3 cut(s) 345, 589, 644
Bme18I GGWCC 3 cut(s) 141, 515, 607
BmgBI CACGTC 1 cut(s) 401
BmgT120I GGNCC 3 cut(s) 141, 515, 607
BmiI GGNNCC 4 cut(s) 142, 143, 204, 349
BmrFI CCNGG 3 cut(s) 345, 589, 644
BmsI GCATC 4 cut(s) 207, 327, 456, 579
BoxI GACNNNNGTC 1 cut(s) 513
BpmI CTGGAG 2 cut(s) 327, 665
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 650
BsaJI CCNNGG 4 cut(s) 487, 518, 587, 588
BsaWI WCCGGW 1 cut(s) 505
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 300, 512, 649
Bse1I ACTGG 1 cut(s) 517
Bse21I CCTNAGG 2 cut(s) 96, 255
Bse3DI GCAATG 4 cut(s) 33, 117, 129, 305
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 3 cut(s) 345, 589, 644
BseDI CCNNGG 4 cut(s) 487, 518, 587, 588
BseGI GGATG 3 cut(s) 218, 222, 310
BseLI CCNNNNNNNGG 4 cut(s) 137, 300, 512, 649
BseMI GCAATG 4 cut(s) 33, 117, 129, 305
BseMII CTCAG 5 cut(s) 35, 110, 257, 269, 487
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 2 cut(s) 243, 662
BseXI GCAGC 2 cut(s) 101, 238
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 1 cut(s) 616
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 2 cut(s) 154, 411
BslI CCNNNNNNNGG 4 cut(s) 137, 300, 512, 649
BsmFI GGGAC 2 cut(s) 154, 411
BsnI GGCC 1 cut(s) 616
Bsp13I TCCGGA 1 cut(s) 505
Bsp143I GATC 4 cut(s) 40, 178, 259, 670
Bsp19I CCATGG 1 cut(s) 518
Bsp68I TCGCGA 1 cut(s) 675
BspACI CCGC 4 cut(s) 38, 112, 363, 481
BspANI GGCC 1 cut(s) 616
BspCNI CTCAG 5 cut(s) 36, 109, 256, 268, 486
BspEI TCCGGA 1 cut(s) 505
BspFNI CGCG 1 cut(s) 675
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 4 cut(s) 142, 143, 204, 349
BspMAI CTGCAG 1 cut(s) 335
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 2 cut(s) 48, 267
BspQI GCTCTTC 1 cut(s) 177
BsrDI GCAATG 4 cut(s) 33, 117, 129, 305
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 487, 518, 587, 588
BssMI GATC 4 cut(s) 40, 178, 259, 670
BssSI CACGAG 1 cut(s) 602
BssT1I CCWWGG 2 cut(s) 487, 518
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 3 cut(s) 345, 589, 644
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 6 cut(s) 6, 44, 96, 243, 255, 473
BstDSI CCRYGG 1 cut(s) 518
BstENI CCTNNNNNAGG 1 cut(s) 647
BstF5I GGATG 3 cut(s) 218, 222, 310
BstFNI CGCG 1 cut(s) 675
BstKTI GATC 4 cut(s) 43, 181, 262, 673
BstMBI GATC 4 cut(s) 40, 178, 259, 670
BstMWI GCNNNNNNNGC 3 cut(s) 226, 235, 244
BstNI CCWGG 3 cut(s) 345, 589, 644
BstPAI GACNNNNGTC 1 cut(s) 513
BstSCI CCNGG 3 cut(s) 343, 587, 642
BstSFI CTRYAG 1 cut(s) 331
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 101, 238
BstX2I RGATCY 2 cut(s) 40, 259
BstXI CCANNNNNNTGG 1 cut(s) 135
BstYI RGATCY 2 cut(s) 40, 259
Bsu36I CCTNAGG 2 cut(s) 96, 255
BsuI GTATCC 1 cut(s) 428
BsuRI GGCC 1 cut(s) 616
BtgI CCRYGG 1 cut(s) 518
BtrI CACGTC 1 cut(s) 401
BtsCI GGATG 3 cut(s) 218, 222, 310
BtsIMutI CAGTG 2 cut(s) 481, 510
BtuMI TCGCGA 1 cut(s) 675
BveI ACCTGC 1 cut(s) 338
CciI TCATGA 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 141, 515, 607
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 565, 595
CviAII CATG 6 cut(s) 182, 272, 431, 519, 535, 559
CviJI RGCY 9 cut(s) 59, 81, 170, 205, 229, 238, 247, 577, 616
CviKI_1 RGCY 9 cut(s) 59, 81, 170, 205, 229, 238, 247, 577, 616
CviQI GTAC 2 cut(s) 565, 595
DdeI CTNAG 6 cut(s) 6, 44, 96, 243, 255, 473
DpnI GATC 4 cut(s) 42, 180, 261, 672
DpnII GATC 4 cut(s) 40, 178, 259, 670
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 2 cut(s) 487, 518
Eco47I GGWCC 3 cut(s) 141, 515, 607
Eco81I CCTNAGG 2 cut(s) 96, 255
EcoNI CCTNNNNNAGG 1 cut(s) 647
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 3 cut(s) 343, 587, 642
EcoT14I CCWWGG 2 cut(s) 487, 518
EcoT22I ATGCAT 1 cut(s) 320
ErhI CCWWGG 2 cut(s) 487, 518
FaeI CATG 6 cut(s) 185, 275, 434, 522, 538, 562
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 2 cut(s) 154, 411
FatI CATG 6 cut(s) 181, 271, 430, 518, 534, 558
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 115, 227
FokI GGATG 3 cut(s) 225, 229, 317
Fsp4HI GCNGC 2 cut(s) 115, 227
FspBI CTAG 1 cut(s) 555
GluI GCNGC 2 cut(s) 115, 227
GsuI CTGGAG 2 cut(s) 327, 665
HaeIII GGCC 1 cut(s) 616
HapII CCGG 1 cut(s) 506
HgaI GACGC 1 cut(s) 58
Hin1II CATG 6 cut(s) 185, 275, 434, 522, 538, 562
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 1 cut(s) 502
HpaII CCGG 1 cut(s) 506
HphI GGTGA 2 cut(s) 553, 665
Hpy188I TCNGA 2 cut(s) 45, 465
Hpy188III TCNNGA 6 cut(s) 176, 182, 257, 506, 602, 674
HpyAV CCTTC 3 cut(s) 449, 451, 659
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 6 cut(s) 33, 117, 122, 220, 318, 333
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 235, 244
HpyF3I CTNAG 6 cut(s) 6, 44, 96, 243, 255, 473
HpySE526I ACGT 1 cut(s) 400
Hsp92II CATG 6 cut(s) 185, 275, 434, 522, 538, 562
KflI GGGWCCC 1 cut(s) 141
Kpn2I TCCGGA 1 cut(s) 505
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 4 cut(s) 40, 178, 259, 670
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 2 cut(s) 101, 238
LweI GCATC 4 cut(s) 207, 327, 456, 579
MaeI CTAG 1 cut(s) 555
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 3 cut(s) 62, 476, 653
MalI GATC 4 cut(s) 42, 180, 261, 672
MboI GATC 4 cut(s) 40, 178, 259, 670
MboII GAAGA 2 cut(s) 152, 164
MflI RGATCY 2 cut(s) 40, 259
Mph1103I ATGCAT 1 cut(s) 320
MroI TCCGGA 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 2 cut(s) 326, 359
MslI CAYNNNNRTG 3 cut(s) 122, 133, 539
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 3 cut(s) 345, 589, 644
MvaI CCWGG 3 cut(s) 345, 589, 644
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 3 cut(s) 226, 235, 244
NcoI CCATGG 1 cut(s) 518
NdeII GATC 4 cut(s) 40, 178, 259, 670
NlaIII CATG 6 cut(s) 185, 275, 434, 522, 538, 562
NlaIV GGNNCC 4 cut(s) 142, 143, 204, 349
NmuCI GTSAC 2 cut(s) 476, 653
NruI TCGCGA 1 cut(s) 675
NsiI ATGCAT 1 cut(s) 320
PagI TCATGA 1 cut(s) 181
PasI CCCWGGG 1 cut(s) 588
PciSI GCTCTTC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 502
PflMI CCANNNNNTGG 1 cut(s) 300
PkrI GCNGC 2 cut(s) 116, 228
PpuMI RGGWCCY 1 cut(s) 141
PshAI GACNNNNGTC 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 3 cut(s) 343, 587, 642
PspGI CCWGG 3 cut(s) 343, 587, 642
PspN4I GGNNCC 4 cut(s) 142, 143, 204, 349
PspPI GGNCC 3 cut(s) 141, 515, 607
PspPPI RGGWCCY 1 cut(s) 141
PstI CTGCAG 1 cut(s) 335
PsuI RGATCY 2 cut(s) 40, 259
RruI TCGCGA 1 cut(s) 675
RsaI GTAC 2 cut(s) 566, 596
RsaNI GTAC 2 cut(s) 565, 595
RseI CAYNNNNRTG 3 cut(s) 122, 133, 539
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 326, 359
SatI GCNGC 2 cut(s) 115, 227
Sau3AI GATC 4 cut(s) 40, 178, 259, 670
Sau96I GGNCC 3 cut(s) 141, 515, 607
ScaI AGTACT 1 cut(s) 596
ScrFI CCNGG 3 cut(s) 345, 589, 644
SfaNI GCATC 4 cut(s) 207, 327, 456, 579
SfcI CTRYAG 1 cut(s) 331
SinI GGWCC 3 cut(s) 141, 515, 607
SmiMI CAYNNNNRTG 3 cut(s) 122, 133, 539
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SsiI CCGC 4 cut(s) 38, 112, 363, 481
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 3 cut(s) 343, 587, 642
StyI CCWWGG 2 cut(s) 487, 518
TaaI ACNGT 1 cut(s) 661
TaiI ACGT 1 cut(s) 403
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 2 cut(s) 326, 359
Tru9I TTAA 2 cut(s) 326, 359
TscAI CASTG 2 cut(s) 481, 517
TseFI GTSAC 2 cut(s) 476, 653
TseI GCWGC 2 cut(s) 114, 226
Tsp45I GTSAC 2 cut(s) 476, 653
TspDTI ATGAA 5 cut(s) 16, 146, 405, 523, 575
TspRI CASTG 2 cut(s) 481, 517
Van91I CCANNNNNTGG 1 cut(s) 300
VpaK11BI GGWCC 3 cut(s) 141, 515, 607
XagI CCTNNNNNAGG 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 555
ZrmI AGTACT 1 cut(s) 596
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.