Rh2DG572900

pre-mRNA-processing-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000798
Physical Location & Seq
Forward (+)
80305828 .. 80306731
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG572900.1

Sequence Viewer

Length: 813 bp
ATGTGGTACAACGCCGAAATTTCACCGCCGGGGACGGGAAATACCTCGATTCCATCGACGGTGGCTCAGCCCTGTCTTCCGTCACCGGCCGATCTTGAAGAGAAAGCCCGCAGATGGCAGCAGCTTTCCTCCCGCAAGTGGTCCAATCGCCACGGCGAACGGCGCGCCGTGGATTCGCAAAAACAGGACATGCCTCCGGAGCATGTGAGGAAGGTCGTGAAAGAGCACGGCGACATGTCGTCGAAGAAGTACCGGCACGACAAGCGGGTCTACCTGGGAGCTCTGAAGTTCGTTCCTCACGCCGTGTACAAGCTCCTCGAGAATATGCCGATGCCGTGGGAGCAGGTCCGTAATGTGAAGGTGCTGTACCATATTACCGGCGCAGTTACCTTCGTCAACGAGACTCCCTGGGTTGTGGAGCCGATCTACTTGGCTCAATGGGCCACAATGTGGATCATGATGAGGAGGGAGAAGAGGGATCGCCGGCATTTCAAGAGGATGAGGTTTCCGCCGTTGGATGATGAGGAGCCTGTGTTGGATTATGCTGATAACTTGTTGGATGTTGAGCCTCTTGAGCCGATTCAGCTCGAGCTTGATGCCGAAGAGGATTCGGCTGTGTATGACTGGTTTTATGACCATAAACCTCTTGTGAAGACTAAGCTGATCAACGGCCCGACCTACCGGAAGTGGCAGCTCTCCCTGCCGATTATGGAAGCCCTTTACCGGCTTTCAGGACAGGTGGGCCGAAATTCGAGCCATTGTTTAGGGATATGGAGCAAGGGGAGGAGGATTGGAATGAGTTTAATGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000380 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

270

Amino Acids

31.7

Weight (kDa)

9.18

Isoelectric Point (pI)

58.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRO8NT PF08082 61 - 212 9.9e-85 PRO8NT (NUC069), PrP8 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
Acc36I ACCTGC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 450
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 5 cut(s) 26, 109, 133, 265, 509
AclWI GGATC 2 cut(s) 461, 486
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 2 cut(s) 18, 748
AcuI CTGAAG 1 cut(s) 305
AdeI CACNNNGTG 2 cut(s) 304, 450
AfaI GTAC 4 cut(s) 8, 251, 308, 368
AfiI CCNNNNNNNGG 5 cut(s) 35, 114, 138, 450, 723
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 2 cut(s) 98, 493
AhdI GACNNNNNGTC 1 cut(s) 238
AjnI CCWGG 2 cut(s) 273, 407
AluBI AGCT 7 cut(s) 124, 281, 313, 586, 592, 661, 694
AluI AGCT 7 cut(s) 124, 281, 313, 586, 592, 661, 694
Alw21I GWGCWC 2 cut(s) 228, 283
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 2 cut(s) 461, 486
Ama87I CYCGRG 2 cut(s) 317, 587
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 4 cut(s) 87, 441, 670, 742
ApeKI GCWGC 3 cut(s) 118, 121, 691
ApoI RAATTY 2 cut(s) 18, 748
AscI GGCGCGCC 1 cut(s) 163
AspLEI GCGC 3 cut(s) 165, 167, 383
AspS9I GGNCC 5 cut(s) 141, 346, 441, 671, 742
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 15, 75
AvaI CYCGRG 2 cut(s) 317, 587
AvaII GGWCC 2 cut(s) 141, 346
BanII GRGCYC 1 cut(s) 283
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BbsI GAAGAC 2 cut(s) 68, 659
Bbv12I GWGCWC 2 cut(s) 228, 283
BbvI GCAGC 3 cut(s) 130, 133, 703
BccI CCATC 2 cut(s) 61, 108
BceAI ACGGC 8 cut(s) 152, 169, 176, 244, 287, 319, 496, 685
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 2 cut(s) 275, 409
BclI TGATCA 1 cut(s) 663
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 334
BisI GCNGC 3 cut(s) 119, 122, 692
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 3 cut(s) 120, 123, 693
Bme1390I CCNGG 3 cut(s) 30, 275, 409
Bme18I GGWCC 2 cut(s) 141, 346
BmeRI GACNNNNNGTC 1 cut(s) 238
BmeT110I CYCGRG 2 cut(s) 317, 587
BmgT120I GGNCC 5 cut(s) 141, 346, 441, 671, 742
BmiI GGNNCC 2 cut(s) 420, 528
BmrFI CCNGG 3 cut(s) 30, 275, 409
BmsI GCATC 2 cut(s) 321, 586
BpiI GAAGAC 2 cut(s) 68, 659
Bpu1102I GCTNAGC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 593
BpuMI CCSGG 1 cut(s) 30
BsaJI CCNNGG 7 cut(s) 29, 151, 168, 274, 335, 407, 408
BsaWI WCCGGW 2 cut(s) 196, 681
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 114, 138, 450, 723
Bse118I RCCGGY 5 cut(s) 85, 252, 377, 483, 723
Bse1I ACTGG 1 cut(s) 629
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 2 cut(s) 275, 409
BseDI CCNNGG 7 cut(s) 29, 151, 168, 274, 335, 407, 408
BseGI GGATG 3 cut(s) 504, 523, 565
BseLI CCNNNNNNNGG 5 cut(s) 35, 114, 138, 450, 723
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 629
BsePI GCGCGC 1 cut(s) 163
BseRI GAGGAG 4 cut(s) 305, 478, 539, 799
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 130, 133, 703
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 4 cut(s) 89, 443, 672, 744
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 228, 283
BsiHKCI CYCGRG 2 cut(s) 317, 587
BsiSI CCGG 8 cut(s) 29, 86, 197, 253, 378, 484, 682, 724
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 5 cut(s) 35, 114, 138, 450, 723
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 4 cut(s) 89, 443, 672, 744
BsoBI CYCGRG 2 cut(s) 317, 587
Bsp1286I GDGCHC 2 cut(s) 228, 283
Bsp13I TCCGGA 1 cut(s) 196
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 5 cut(s) 91, 423, 453, 478, 663
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 5 cut(s) 26, 109, 133, 265, 509
BspANI GGCC 4 cut(s) 89, 443, 672, 744
BspCNI CTCAG 1 cut(s) 79
BspEI TCCGGA 1 cut(s) 196
BspFNI CGCG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 2 cut(s) 420, 528
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 2 cut(s) 461, 486
BsrFI RCCGGY 5 cut(s) 85, 252, 377, 483, 723
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 5 cut(s) 85, 252, 377, 483, 723
BssECI CCNNGG 7 cut(s) 29, 151, 168, 274, 335, 407, 408
BssHII GCGCGC 1 cut(s) 163
BssMI GATC 5 cut(s) 91, 423, 453, 478, 663
Bst2UI CCWGG 2 cut(s) 275, 409
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 3 cut(s) 93, 467, 597
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 3 cut(s) 109, 165, 485
BstDEI CTNAG 2 cut(s) 66, 657
BstDSI CCRYGG 3 cut(s) 151, 168, 335
BstF5I GGATG 3 cut(s) 504, 523, 565
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 3 cut(s) 165, 167, 383
BstKTI GATC 5 cut(s) 94, 426, 456, 481, 666
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 5 cut(s) 91, 423, 453, 478, 663
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 8 cut(s) 162, 199, 262, 340, 440, 574, 583, 700
BstNI CCWGG 2 cut(s) 275, 409
BstNSI RCATGY 3 cut(s) 193, 206, 238
BstSCI CCNGG 3 cut(s) 28, 273, 407
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 3 cut(s) 130, 133, 703
BstV2I GAAGAC 2 cut(s) 68, 659
BstZI CGGCCG 1 cut(s) 87
BsuRI GGCC 4 cut(s) 89, 443, 672, 744
BtgI CCRYGG 3 cut(s) 151, 168, 335
BtsCI GGATG 3 cut(s) 504, 523, 565
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 3 cut(s) 109, 165, 485
CciI TCATGA 1 cut(s) 456
CfoI GCGC 3 cut(s) 165, 167, 383
Cfr10I RCCGGY 5 cut(s) 85, 252, 377, 483, 723
Cfr13I GGNCC 5 cut(s) 141, 346, 441, 671, 742
Csp6I GTAC 4 cut(s) 7, 250, 307, 367
CviAII CATG 4 cut(s) 190, 203, 235, 457
CviQI GTAC 4 cut(s) 7, 250, 307, 367
DdeI CTNAG 2 cut(s) 66, 657
DpnI GATC 5 cut(s) 93, 425, 455, 480, 665
DpnII GATC 5 cut(s) 91, 423, 453, 478, 663
DraIII CACNNNGTG 2 cut(s) 304, 450
DrdI GACNNNNNNGTC 1 cut(s) 266
DriI GACNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 87
EagI CGGCCG 1 cut(s) 87
Eam1104I CTCTTC 3 cut(s) 93, 467, 597
Eam1105I GACNNNNNGTC 1 cut(s) 238
EarI CTCTTC 3 cut(s) 93, 467, 597
EciI GGCGGA 1 cut(s) 498
Ecl136II GAGCTC 1 cut(s) 281
EclXI CGGCCG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 141, 346
Eco52I CGGCCG 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 2 cut(s) 317, 587
EcoICRI GAGCTC 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 273, 407
EcoT38I GRGCYC 1 cut(s) 283
FaeI CATG 4 cut(s) 193, 206, 238, 460
FaqI GGGAC 1 cut(s) 46
FatI CATG 4 cut(s) 189, 202, 234, 456
FauI CCCGC 3 cut(s) 116, 140, 258
FbaI TGATCA 1 cut(s) 663
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 119, 122, 692
FokI GGATG 3 cut(s) 511, 530, 572
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 119, 122, 692
GlaI GCGC 3 cut(s) 164, 166, 382
GluI GCNGC 3 cut(s) 119, 122, 692
HaeIII GGCC 4 cut(s) 89, 443, 672, 744
HapII CCGG 8 cut(s) 29, 86, 197, 253, 378, 484, 682, 724
HhaI GCGC 3 cut(s) 165, 167, 383
Hin1II CATG 4 cut(s) 193, 206, 238, 460
Hin6I GCGC 3 cut(s) 163, 165, 381
HinP1I GCGC 3 cut(s) 163, 165, 381
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 5 cut(s) 49, 173, 403, 580, 608
HpaII CCGG 8 cut(s) 29, 86, 197, 253, 378, 484, 682, 724
HphI GGTGA 2 cut(s) 15, 75
Hpy166II GTNNAC 3 cut(s) 271, 307, 397
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 8 cut(s) 95, 197, 217, 319, 457, 493, 572, 732
Hpy8I GTNNAC 3 cut(s) 271, 307, 397
Hpy99I CGWCG 2 cut(s) 61, 244
HpyAV CCTTC 3 cut(s) 205, 352, 400
HpyCH4III ACNGT 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 8 cut(s) 162, 199, 262, 340, 440, 574, 583, 700
HpyF3I CTNAG 2 cut(s) 66, 657
Hsp92II CATG 4 cut(s) 193, 206, 238, 460
HspAI GCGC 3 cut(s) 163, 165, 381
Kpn2I TCCGGA 1 cut(s) 196
KroI GCCGGC 1 cut(s) 483
KroNI GCCGGC 1 cut(s) 485
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 5 cut(s) 91, 423, 453, 478, 663
LmnI GCTCC 7 cut(s) 199, 278, 318, 340, 418, 526, 774
Lsp1109I GCAGC 3 cut(s) 130, 133, 703
LweI GCATC 2 cut(s) 321, 586
MaeIII GTNAC 2 cut(s) 81, 385
MalI GATC 5 cut(s) 93, 425, 455, 480, 665
MboI GATC 5 cut(s) 91, 423, 453, 478, 663
MboII GAAGA 6 cut(s) 68, 110, 256, 484, 614, 664
MhlI GDGCHC 2 cut(s) 228, 283
MluCI AATT 2 cut(s) 18, 748
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 3 cut(s) 495, 516, 537
MroI TCCGGA 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 483
MseI TTAA 1 cut(s) 803
MspI CCGG 8 cut(s) 29, 86, 197, 253, 378, 484, 682, 724
MspR9I CCNGG 3 cut(s) 30, 275, 409
MvaI CCWGG 2 cut(s) 275, 409
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 8 cut(s) 162, 199, 262, 340, 440, 574, 583, 700
NaeI GCCGGC 1 cut(s) 485
NciI CCSGG 1 cut(s) 30
NdeII GATC 5 cut(s) 91, 423, 453, 478, 663
NgoMIV GCCGGC 1 cut(s) 483
NlaIII CATG 4 cut(s) 193, 206, 238, 460
NlaIV GGNNCC 2 cut(s) 420, 528
NmuCI GTSAC 1 cut(s) 81
NspI RCATGY 3 cut(s) 193, 206, 238
PaeR7I CTCGAG 2 cut(s) 317, 587
PagI TCATGA 1 cut(s) 456
PalAI GGCGCGCC 1 cut(s) 163
PasI CCCWGGG 1 cut(s) 408
PauI GCGCGC 1 cut(s) 163
PciI ACATGT 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 485
PfeI GAWTC 4 cut(s) 49, 173, 580, 608
PflMI CCANNNNNTGG 1 cut(s) 450
PkrI GCNGC 3 cut(s) 120, 123, 693
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PscI ACATGT 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 273, 407
PspGI CCWGG 2 cut(s) 273, 407
PspN4I GGNNCC 2 cut(s) 420, 528
PspPI GGNCC 5 cut(s) 141, 346, 441, 671, 742
PspXI VCTCGAGB 1 cut(s) 587
PteI GCGCGC 1 cut(s) 163
RsaI GTAC 4 cut(s) 8, 251, 308, 368
RsaNI GTAC 4 cut(s) 7, 250, 307, 367
SacI GAGCTC 1 cut(s) 283
SaqAI TTAA 1 cut(s) 803
SatI GCNGC 3 cut(s) 119, 122, 692
Sau3AI GATC 5 cut(s) 91, 423, 453, 478, 663
Sau96I GGNCC 5 cut(s) 141, 346, 441, 671, 742
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 3 cut(s) 30, 275, 409
SduI GDGCHC 2 cut(s) 228, 283
SfaNI GCATC 2 cut(s) 321, 586
Sfr274I CTCGAG 2 cut(s) 317, 587
SgsI GGCGCGCC 1 cut(s) 163
SinI GGWCC 2 cut(s) 141, 346
SlaI CTCGAG 2 cut(s) 317, 587
SmlI CTYRAG 3 cut(s) 317, 572, 587
SmoI CTYRAG 3 cut(s) 317, 572, 587
Sse9I AATT 2 cut(s) 18, 748
SsiI CCGC 5 cut(s) 26, 109, 133, 265, 509
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 3 cut(s) 28, 273, 407
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 6 cut(s) 47, 56, 242, 318, 588, 752
TasI AATT 2 cut(s) 18, 748
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 4 cut(s) 49, 173, 580, 608
Tru1I TTAA 1 cut(s) 803
Tru9I TTAA 1 cut(s) 803
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 3 cut(s) 118, 121, 691
Tsp45I GTSAC 1 cut(s) 81
TspGWI ACGGA 2 cut(s) 69, 338
Van91I CCANNNNNTGG 1 cut(s) 450
VpaK11BI GGWCC 2 cut(s) 141, 346
XapI RAATTY 2 cut(s) 18, 748
XceI RCATGY 3 cut(s) 193, 206, 238
XhoI CTCGAG 2 cut(s) 317, 587
XmiI GTMKAC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.