Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000798

Physical Location & Seq

Genomic Coordinates Reverse (-)

7483515 .. 7483700

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1102400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGTGGATTATGATGAGGAGGGAGAAGCGGGATCGGAGGAATTTAAAGCGGATGCGGTTTTCGCCGTTCGATGATGAGAAGCCTCCATTGGATTATGGTGATAATCTGTTGGATATGTTGTGCTTTGGCCTGTTATCTCACCAACTTATAAACCCACAGATGAACAATTTAAAATATAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000375 GO:0000377 GO:0000386 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

62

Amino Acids

7.56

Weight (kDa)

9.8

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRO8NT	PF08082	1 - 40	5.7e-17	PRO8NT (NUC069), PrP8 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80070 AT4G38780
fragaria_vesca	FvH4_6g29610 FvH4_6g43880
malus_domestica	MD00G1072300.v1.1 MD09G1102200.v1.1 MD09G1102300.v1.1 MD09G1102400.v1.1 MD09G1127100.v1.1 MD09G1127300.v1.1 MD17G1212800.v1.1
prunus_persica	Prupe.3G088200_v2.0.a1 Prupe.3G223400_v2.0.a1 Prupe.7G079800_v2.0.a1
pyrus_communis	pycom12419g00050 pycom12419g00060 pycom12419g00070 pycom12419g00080 pycom17g21760 pycom17g21770 pycom17g21780
rosa_chinensis	RchiOBHm_Chr2g0122691 RchiOBHm_Chr2g0135211 RchiOBHm_Chr2g0160631
rosa_laevigata	RLG00000019448 RLG00000021228 RLG00000021230 RLG00000021231 RLG00000028917 RLG00000028918
rosa_multiflora	Rmu_co8242217.1_g000001 Rmu_co8276149.1_g000001 Rmu_sc0000019.1_g000004 Rmu_sc0000674.1_g000029 Rmu_sc0006535.1_g000005 Rmu_sc0011943.1_g000004 Rmu_sc0018128.1_g000001 Rmu_sc0032732.1_g000001 Rmu_sc0040913.1_g000001 Rmu_sc0040914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037020 Rroxscaffold_2G00089540 Rroxscaffold_2G00109400 Rroxscaffold_2G00121310 Rroxscaffold_4G00310000
rosa_rugosa	Rorug01G0172000 Rorug02G0323800 Rorug02G0484400 Rorug02G0484500 Rorug02G0484600
rosa_samantha	Rh1AG188300 Rh1BG154600 Rh1CG174100 Rh1DG068500 Rh2AG309100 Rh2AG371100 Rh2AG549500 Rh2AG549600 Rh2BG307900 Rh2BG380400 Rh2BG563900 Rh2CG286100 Rh2CG359700 Rh2CG534200 Rh2DG397000 Rh2DG572900 Rh2DG573000
rosa_wichuraiana	Rw2G030580 Rw2G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AciI	CCGC	3 cut(s)	28, 49, 55
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	110, 131
BceAI	ACGGC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	42
BseGI	GGATG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	3 cut(s)	28, 49, 55
BspANI	GGCC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	39
BssMI	GATC	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	57
CviJI	RGCY	2 cut(s)	82, 129
CviKI_1	RGCY	2 cut(s)	82, 129
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DraI	TTTAAA	2 cut(s)	45, 171
FaiI	YATR	5 cut(s)	11, 96, 116, 149, 177
FauI	CCCGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	129
HphI	GGTGA	2 cut(s)	110, 131
Hpy188I	TCNGA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	1 cut(s)	143
LweI	GCATC	1 cut(s)	42
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MluCI	AATT	2 cut(s)	40, 166
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	9, 12, 30, 93
MseI	TTAA	2 cut(s)	44, 170
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	1 cut(s)	31
PsiI	TTATAA	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	44, 170
Sau3AI	GATC	1 cut(s)	31
SfaNI	GCATC	1 cut(s)	42
SgeI	CNNG	2 cut(s)	41, 142
Sse9I	AATT	2 cut(s)	40, 166
SsiI	CCGC	3 cut(s)	28, 49, 55
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	40, 166
Tru1I	TTAA	2 cut(s)	44, 170
Tru9I	TTAA	2 cut(s)	44, 170
TspDTI	ATGAA	1 cut(s)	176
XapI	RAATTY	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.