Rmu_sc0011943.1_g000004

pre-mRNA-processing-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011943.1
OG0000798
Physical Location & Seq
Forward (+)
13016 .. 13330
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011943.1_g000004.1.cds

Sequence Viewer

Length: 315 bp
atgtggaacaacggccagattgtgccgccaggcactggtggctcgtcgattccgccaccgcccgcggctcagccctcttatacggtgttgccgcctccggcagatgccgaggccgtgctcgaagagaaggctcgtaaatggcagcaactaaattccaagcggtacagcgacaagcgcaagtttggcttcgttgagacgcagaaggaggacatgcctcctgagcatgtcaggaagatcattaggtcagtttcttctgtttttctccttcgtttggttatgtatctaaatgatatttccggatttcatttttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000380 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

104

Amino Acids

11.71

Weight (kDa)

9.4

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AccII CGCG 1 cut(s) 65
AccIII TCCGGA 1 cut(s) 296
AciI CCGC 7 cut(s) 26, 53, 59, 63, 65, 92, 160
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 35, 271
AjnI CCWGG 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 188
AlwNI CAGNNNCTG 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 296
AoxI GGCC 2 cut(s) 13, 111
ApeKI GCWGC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 151
AspLEI GCGC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 154
BceAI ACGGC 2 cut(s) 28, 98
BciT130I CCWGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 188
BisI GCNGC 4 cut(s) 26, 66, 92, 143
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 4 cut(s) 27, 67, 93, 144
Bme1390I CCNGG 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 63, 108
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 271
Bse1I ACTGG 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 296
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 63, 108
BseLI CCNNNNNNNGG 2 cut(s) 35, 271
BseMII CTCAG 2 cut(s) 83, 210
BseNI ACTGG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 15, 113
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 2 cut(s) 98, 297
BslI CCNNNNNNNGG 2 cut(s) 35, 271
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsnI GGCC 2 cut(s) 15, 113
Bsp1286I GDGCHC 1 cut(s) 120
Bsp13I TCCGGA 1 cut(s) 296
Bsp143I GATC 1 cut(s) 234
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 7 cut(s) 26, 53, 59, 63, 65, 92, 160
BspANI GGCC 2 cut(s) 15, 113
BspCNI CTCAG 2 cut(s) 82, 211
BspEI TCCGGA 1 cut(s) 296
BspFNI CGCG 1 cut(s) 65
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 63, 108
BssMI GATC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 69, 219
BstDSI CCRYGG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 4 cut(s) 39, 174, 183, 220
BstNI CCWGG 1 cut(s) 30
BstNSI RCATGY 2 cut(s) 214, 227
BstSCI CCNGG 1 cut(s) 28
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 2 cut(s) 15, 113
BtgI CCRYGG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 63
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 177
Cfr42I CCGCGG 1 cut(s) 66
CseI GACGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 163
CviAII CATG 2 cut(s) 211, 224
CviJI RGCY 7 cut(s) 15, 42, 68, 73, 113, 131, 186
CviKI_1 RGCY 7 cut(s) 15, 42, 68, 73, 113, 131, 186
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 69, 219
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 28
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 2 cut(s) 214, 227
FaiI YATR 4 cut(s) 81, 212, 225, 278
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 2 cut(s) 210, 223
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 4 cut(s) 26, 66, 92, 143
Fsp4HI GCNGC 4 cut(s) 26, 66, 92, 143
GlaI GCGC 1 cut(s) 176
GluI GCNGC 4 cut(s) 26, 66, 92, 143
HaeIII GGCC 2 cut(s) 15, 113
HapII CCGG 2 cut(s) 98, 297
HgaI GACGC 1 cut(s) 205
HhaI GCGC 1 cut(s) 177
Hin1II CATG 2 cut(s) 214, 227
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 1 cut(s) 49
HpaII CCGG 2 cut(s) 98, 297
Hpy188III TCNNGA 3 cut(s) 218, 229, 297
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 121, 196, 275
HpyCH4III ACNGT 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 174, 183, 220
HpyF3I CTNAG 2 cut(s) 69, 219
Hsp92II CATG 2 cut(s) 214, 227
HspAI GCGC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 296
KspI CCGCGG 1 cut(s) 66
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 8 cut(s) 15, 21, 29, 42, 111, 214, 231, 310
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 94
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 3 cut(s) 134, 243, 244
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 151
MnlI CCTC 5 cut(s) 85, 103, 105, 199, 225
MroI TCCGGA 1 cut(s) 296
MseI TTAA 1 cut(s) 313
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 2 cut(s) 98, 297
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 4 cut(s) 39, 174, 183, 220
NdeII GATC 1 cut(s) 234
NlaIII CATG 2 cut(s) 214, 227
NmeAIII GCCGAG 1 cut(s) 133
NspI RCATGY 2 cut(s) 214, 227
PfeI GAWTC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 4 cut(s) 27, 67, 93, 144
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SacII CCGCGG 1 cut(s) 66
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 4 cut(s) 26, 66, 92, 143
Sau3AI GATC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 1 cut(s) 120
SetI ASST 1 cut(s) 245
SfaNI GCATC 1 cut(s) 94
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
Sse9I AATT 1 cut(s) 151
SsiI CCGC 7 cut(s) 26, 53, 59, 63, 65, 92, 160
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 2 cut(s) 47, 120
TasI AATT 1 cut(s) 151
TauI GCSGC 3 cut(s) 28, 68, 94
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 1 cut(s) 40
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 35
XapI RAATTY 1 cut(s) 151
XceI RCATGY 2 cut(s) 214, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.