Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000798

Physical Location & Seq

Genomic Coordinates Reverse (-)

61418178 .. 61421626

Gene Structure 3449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0484500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGGTTGCCCAGTTGCTATTTCATATTACTCTGTTACTGTGGTCTATGAGTAGTACTGAAGTACTAGTTGTAGCATCAGAAGCACCCATTGTAGCAACAGAAGCACCCATAGCAAAGCCTAATTGTCCATCGCATTGTGGAGGCATTGAAATCCCATACCCTTTTGGGATAGGAGCAGGTTGTTACATTAATGACGACTGGTTCCAAGTATTCTGTGACAACTCCACTGGCTCTCCTACACCTTTCTTGAACGGCACCAATCTGGAGGTACTAGATATTTCTGTTGAAGGCACTCTAAAGGTCAGAAACCCAATCACCTTCTCTAATTGCAGTGATAAGCCAAATCGTCAAGCAGTCAACTTGGAGGGAAGCCCTTTTATGTTCTCCCAGAATAATATGTTCACTGCAGTAGGTTGCGGAGTTATGGCCACAATCACCTCAAACTCAAATGGCGTTACCATTTCAGCCGGGTGCAGGTCCGAATGTTATGATTCTACTGATAGTAAAAATAGTAGCAGCCATAATACCTGCAATGGTGTGGATTGCTGCCAGACTGTCATCCCTCCTTCCCTCTCTGCCTTCAATACTAGTTTCCAGCAGGCTAATGATAATTACACAGAAAGTTCATGCAATTATGCATTTTTGGTTGATCGTGACTGGTTTGAGTCATTTGCCAAAAATTCAACAAATATTTCTGCCACCAGTGATATGGACCAAGTCCCCGTGGAGCTAAAATGGAACTTATACCATTCAACAACTGATGTTTTTGGGACCTTTATGGAAACAAATGCATCGGTGCTGTATCCTGGTGACCTAGATGGTTATTGCGATAGTTACAATGACAGCTCTTCATTATATGGATCCTCAAGGCTTGAATGTTACTGTGGAGGGGGCTCTGAGGGAAATCCATATCTTCTTCAAGGATGCAGAGATATCAATGAATGTGAGGATCCGGAAAACAGAGCTAGTTGTTCTGCAGGGCTCGTATGTGTCAATTATAATAATGGATGGGGATGCAGCTACCCAGAAACCAGCAAGTCGCGGGTTAAAGTAATCTTCATAGGTATCGGCAGTGGTTTTGGACTGATAGTTCTACTAATTGGTGCATGGTGGTTGTACAAACTTTGGAAGATAAGGAAAAACATCAAACTCAAGAAGAAGTTCTTTAAACAAAATGGGGGACTATTATTAGAGCAGCAACTATCTTCAGGTGAAGTTAATGTTGAGAAAATTAAGCTGTTCAATTCAAAGGAATTAGAAAAAGCCACAGACCGTTTTAATGTAGATAGAATACTTGGCCAAGGAGGCCAAGGTACTGTTTACAAAGCAATGTTGGCAGATGGAAGAATTGTTGCTGTAAAGAAGTCTAAGATAGTTGATGGAGGTGAAGTGGGACAATTCATTAATGAAATTGTCATTCTTTCGCAAATTAACCACAGGAATGTGGTTAAACTATTGGGTTGTTGTTTAGAGACCGAAGTTCCACTTTTGGTTTACGAATTCATACCCAAAGGGACTATCTACCAGTATCTCCATAATCAGAATGAAGAGTTTCCACTCACATGGGAAATGCGCTTAAGGATTTCTGCAGAAGTTGCCGGAGCTCTTTCATACTTACACTCTGCAGCTGCTTTCCCAATTTACCACCGTGATATCAAGTCTACAAACATACTATTAGATGATAAATACAGAGCAAAAGTTGCAGATTTTGGGACTTCAAGATCAGTTTCCATAGACCAAACACACCTGACCACATTTGTACATGGTACATTTGGTTACTTGGATCCGGAGTACTTCCAGTCAAGTCAATTTACAGACAAAAGTGACGTGTATAGCTTTGGAGTGGTCCTTGTCGAGCTCTTGACTGGAGAAAAACCAGTTTCTCTGACTAGGCCACAAGAAGCCAGAGGCCTTGTTTCATATTTCAATCTCTCACTGGAGTCGAATAATTTGTTTGATATTATTGATGCTCGAGTTAAGGTGGATGGTGTAACAGGAGATATTTTGACAGTAGCTGATCTTGCAAAAAGATGTCTGGATATGAATGGCAAGAGACGACCTACTATGAAAGAAGTTGCAATGGAGTTGGAGGTGATTCATAAATCAGTAAAATCTTCAAATATACAACAAAATCATGAAGAGGTTGAGTGTGTCCGAAATGAAGTAACTTGTCCTTGGGATGTTGCTTCTACATTAACCGGGTCAGCTTTGGATGGTGGCACTGCTTCATCAATTGATTCACTACCACTAATGTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000375 GO:0000377 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

753

Amino Acids

82.87

Weight (kDa)

5.06

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	42 - 101	6.9e-11	Wall-associated receptor kinase galacturonan-binding
Pkinase	PF00069	426 - 692	9.2e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	428 - 696	4.7e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80070 AT4G38780
fragaria_vesca	FvH4_6g29610 FvH4_6g43880
malus_domestica	MD00G1072300.v1.1 MD09G1102200.v1.1 MD09G1102300.v1.1 MD09G1102400.v1.1 MD09G1127100.v1.1 MD09G1127300.v1.1 MD17G1212800.v1.1
prunus_persica	Prupe.3G088200_v2.0.a1 Prupe.3G223400_v2.0.a1 Prupe.7G079800_v2.0.a1
pyrus_communis	pycom12419g00050 pycom12419g00060 pycom12419g00070 pycom12419g00080 pycom17g21760 pycom17g21770 pycom17g21780
rosa_chinensis	RchiOBHm_Chr2g0122691 RchiOBHm_Chr2g0135211 RchiOBHm_Chr2g0160631
rosa_laevigata	RLG00000019448 RLG00000021228 RLG00000021230 RLG00000021231 RLG00000028917 RLG00000028918
rosa_multiflora	Rmu_co8242217.1_g000001 Rmu_co8276149.1_g000001 Rmu_sc0000019.1_g000004 Rmu_sc0000674.1_g000029 Rmu_sc0006535.1_g000005 Rmu_sc0011943.1_g000004 Rmu_sc0018128.1_g000001 Rmu_sc0032732.1_g000001 Rmu_sc0040913.1_g000001 Rmu_sc0040914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037020 Rroxscaffold_2G00089540 Rroxscaffold_2G00109400 Rroxscaffold_2G00121310 Rroxscaffold_4G00310000
rosa_rugosa	Rorug01G0172000 Rorug02G0323800 Rorug02G0484400 Rorug02G0484500 Rorug02G0484600
rosa_samantha	Rh1AG188300 Rh1BG154600 Rh1CG174100 Rh1DG068500 Rh2AG309100 Rh2AG371100 Rh2AG549500 Rh2AG549600 Rh2BG307900 Rh2BG380400 Rh2BG563900 Rh2CG286100 Rh2CG359700 Rh2CG534200 Rh2DG397000 Rh2DG572900 Rh2DG573000
rosa_wichuraiana	Rw2G030580 Rw2G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	999
Acc36I	ACCTGC	3 cut(s)	167, 465, 536
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	1661
AccII	CGCG	1 cut(s)	1042
AccIII	TCCGGA	2 cut(s)	952, 1786
AciI	CCGC	2 cut(s)	417, 1042
AclWI	GGATC	6 cut(s)	855, 868, 944, 957, 1778, 1791
AcoI	YGGCCR	2 cut(s)	426, 1297
AcsI	RAATTY	2 cut(s)	679, 1499
AcuI	CTGAAG	2 cut(s)	78, 1191
AfaI	GTAC	8 cut(s)	55, 63, 270, 1118, 1315, 1761, 1768, 1793
AfiI	CCNNNNNNNGG	1 cut(s)	474
AflII	CTTAAG	1 cut(s)	1576
AflIII	ACRYGT	1 cut(s)	1827
AhlI	ACTAGT	2 cut(s)	64, 587
AjiI	CACGTC	1 cut(s)	1828
AjnI	CCWGG	1 cut(s)	805
AloI	GAACNNNNNNTCC	2 cut(s)	1074, 1106
Alw21I	GWGCWC	2 cut(s)	1606, 1860
Alw26I	GTCTC	2 cut(s)	1466, 2047
AlwI	GGATC	6 cut(s)	855, 868, 944, 957, 1778, 1791
AlwNI	CAGNNNCTG	1 cut(s)	2015
Ama87I	CYCGRG	1 cut(s)	1971
Aor13HI	TCCGGA	2 cut(s)	952, 1786
AoxI	GGCC	5 cut(s)	426, 1297, 1306, 1892, 1909
ApeKI	GCWGC	6 cut(s)	516, 546, 1017, 1195, 1625, 1628
ApoI	RAATTY	2 cut(s)	679, 1499
AseI	ATTAAT	2 cut(s)	189, 1404
Asp700I	GAANNNNTTC	2 cut(s)	1160, 1551
AspLEI	GCGC	1 cut(s)	1575
AspS9I	GGNCC	4 cut(s)	477, 712, 771, 1846
AsuC2I	CCSGG	2 cut(s)	469, 2200
AsuHPI	GGTGA	6 cut(s)	307, 427, 821, 1223, 1397, 2104
AvaI	CYCGRG	1 cut(s)	1971
AvaII	GGWCC	4 cut(s)	477, 712, 771, 1846
BalI	TGGCCA	2 cut(s)	428, 1299
BamHI	GGATCC	3 cut(s)	860, 949, 1783
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	4 cut(s)	896, 984, 1606, 1860
Bbv12I	GWGCWC	2 cut(s)	1606, 1860
BbvI	GCAGC	6 cut(s)	528, 533, 1029, 1207, 1615, 1637
BccI	CCATC	7 cut(s)	136, 812, 1002, 1334, 1373, 1979, 2207
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	807
BciVI	GTATCC	1 cut(s)	813
BcnI	CCSGG	2 cut(s)	469, 2200
BcoDI	GTCTC	2 cut(s)	1466, 2047
BcuI	ACTAGT	2 cut(s)	64, 587
BfaI	CTAG	6 cut(s)	65, 272, 588, 815, 966, 1890
BfmI	CTRYAG	4 cut(s)	405, 975, 1587, 1623
BfrI	CTTAAG	1 cut(s)	1576
BfuAI	ACCTGC	3 cut(s)	167, 465, 536
BfuI	GTATCC	1 cut(s)	813
BglI	GCCNNNNNGGC	1 cut(s)	1305
BisI	GCNGC	6 cut(s)	517, 547, 1018, 1196, 1626, 1629
BlsI	GCNGC	6 cut(s)	518, 548, 1019, 1197, 1627, 1630
BmcAI	AGTACT	3 cut(s)	55, 63, 1793
Bme1390I	CCNGG	3 cut(s)	469, 807, 2200
Bme18I	GGWCC	4 cut(s)	477, 712, 771, 1846
BmeT110I	CYCGRG	1 cut(s)	1971
BmgBI	CACGTC	1 cut(s)	1828
BmgT120I	GGNCC	4 cut(s)	477, 712, 771, 1846
BmiI	GGNNCC	6 cut(s)	203, 256, 772, 862, 951, 1785
BmrFI	CCNGG	3 cut(s)	469, 807, 2200
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	5 cut(s)	83, 800, 914, 1004, 1957
BmuI	ACTGGG	1 cut(s)	4
BpmI	CTGGAG	3 cut(s)	284, 1887, 1958
BpuEI	CTTGAG	2 cut(s)	850, 1136
BpuMI	CCSGG	2 cut(s)	469, 2200
BsaI	GGTCTC	1 cut(s)	1466
BsaJI	CCNNGG	4 cut(s)	723, 1300, 1309, 2174
BsaWI	WCCGGW	2 cut(s)	952, 1786
BsaXI	ACNNNNNCTCC	4 cut(s)	217, 247, 1374, 1404
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse3DI	GCAATG	3 cut(s)	538, 1335, 2085
BseAI	TCCGGA	2 cut(s)	952, 1786
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	4 cut(s)	723, 1300, 1309, 2174
BseGI	GGATG	7 cut(s)	558, 929, 1013, 1019, 1990, 2185, 2218
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMI	GCAATG	3 cut(s)	538, 1335, 2085
BseMII	CTCAG	1 cut(s)	888
BseXI	GCAGC	6 cut(s)	528, 533, 1029, 1207, 1615, 1637
BsgI	GTGCAG	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	1042
BshFI	GGCC	5 cut(s)	428, 1299, 1308, 1894, 1911
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	1606, 1860
BsiHKCI	CYCGRG	1 cut(s)	1971
BsiSI	CCGG	5 cut(s)	468, 953, 1599, 1787, 2199
BslFI	GGGAC	6 cut(s)	704, 784, 1194, 1407, 1528, 1726
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	2 cut(s)	1466, 2047
BsmBI	CGTCTC	1 cut(s)	2047
BsmFI	GGGAC	6 cut(s)	704, 784, 1194, 1407, 1528, 1726
BsnI	GGCC	5 cut(s)	428, 1299, 1308, 1894, 1911
Bso31I	GGTCTC	1 cut(s)	1466
BsoBI	CYCGRG	1 cut(s)	1971
Bsp1286I	GDGCHC	4 cut(s)	896, 984, 1606, 1860
Bsp13I	TCCGGA	2 cut(s)	952, 1786
Bsp1407I	TGTACA	2 cut(s)	1116, 1759
Bsp143I	GATC	6 cut(s)	649, 860, 949, 1721, 1783, 2017
BspACI	CCGC	2 cut(s)	417, 1042
BspANI	GGCC	5 cut(s)	428, 1299, 1308, 1894, 1911
BspCNI	CTCAG	1 cut(s)	889
BspEI	TCCGGA	2 cut(s)	952, 1786
BspFNI	CGCG	1 cut(s)	1042
BspHI	TCATGA	1 cut(s)	2134
BspLI	GGNNCC	6 cut(s)	203, 256, 772, 862, 951, 1785
BspMAI	CTGCAG	4 cut(s)	409, 979, 1591, 1627
BspMI	ACCTGC	3 cut(s)	167, 465, 536
BspPI	GGATC	6 cut(s)	855, 868, 944, 957, 1778, 1791
BspQI	GCTCTTC	1 cut(s)	853
BspT107I	GGYRCC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	1576
BspTNI	GGTCTC	1 cut(s)	1466
BsrDI	GCAATG	3 cut(s)	538, 1335, 2085
BsrGI	TGTACA	2 cut(s)	1116, 1759
BssECI	CCNNGG	4 cut(s)	723, 1300, 1309, 2174
BssMI	GATC	6 cut(s)	649, 860, 949, 1721, 1783, 2017
BssT1I	CCWWGG	3 cut(s)	1300, 1309, 2174
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	7 cut(s)	39, 556, 884, 1274, 1318, 1649, 2011
Bst6I	CTCTTC	3 cut(s)	853, 1542, 2133
BstAFI	CTTAAG	1 cut(s)	1576
BstAPI	GCANNNNNTGC	2 cut(s)	1595, 1700
BstAUI	TGTACA	2 cut(s)	1116, 1759
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	2 cut(s)	897, 1368
BstDSI	CCRYGG	1 cut(s)	723
BstEII	GGTNACC	1 cut(s)	809
BstF5I	GGATG	7 cut(s)	558, 929, 1013, 1019, 1990, 2185, 2218
BstFNI	CGCG	1 cut(s)	1042
BstHHI	GCGC	1 cut(s)	1575
BstKTI	GATC	6 cut(s)	652, 863, 952, 1724, 1786, 2020
BstMAI	GTCTC	2 cut(s)	1466, 2047
BstMBI	GATC	6 cut(s)	649, 860, 949, 1721, 1783, 2017
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 101, 110, 1305, 1334, 1595, 1700, 2021
BstNI	CCWGG	1 cut(s)	807
BstPI	GGTNACC	1 cut(s)	809
BstSCI	CCNGG	3 cut(s)	467, 805, 2198
BstSFI	CTRYAG	4 cut(s)	405, 975, 1587, 1623
BstUI	CGCG	1 cut(s)	1042
BstV1I	GCAGC	6 cut(s)	528, 533, 1029, 1207, 1615, 1637
BstX2I	RGATCY	3 cut(s)	860, 949, 1783
BstXI	CCANNNNNNTGG	2 cut(s)	709, 1563
BstYI	RGATCY	3 cut(s)	860, 949, 1783
BsuI	GTATCC	1 cut(s)	813
BsuRI	GGCC	5 cut(s)	428, 1299, 1308, 1894, 1911
BtgI	CCRYGG	1 cut(s)	723
BtgZI	GCGATG	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	1828
BtsCI	GGATG	7 cut(s)	558, 929, 1013, 1019, 1990, 2185, 2218
BtsI	GCAGTG	4 cut(s)	337, 402, 1078, 2220
BtsIMutI	CAGTG	7 cut(s)	225, 337, 402, 709, 1078, 1934, 2220
BveI	ACCTGC	3 cut(s)	167, 465, 536
Cac8I	GCNNGC	1 cut(s)	600
CaiI	CAGNNNCTG	1 cut(s)	2015
CciI	TCATGA	1 cut(s)	2134
CfoI	GCGC	1 cut(s)	1575
Cfr13I	GGNCC	4 cut(s)	477, 712, 771, 1846
Csp6I	GTAC	8 cut(s)	54, 62, 269, 1117, 1314, 1760, 1767, 1792
CviAII	CATG	5 cut(s)	627, 1107, 1563, 1763, 2135
CviQI	GTAC	8 cut(s)	54, 62, 269, 1117, 1314, 1760, 1767, 1792
DdeI	CTNAG	2 cut(s)	897, 1368
DpnI	GATC	6 cut(s)	651, 862, 951, 1723, 1785, 2019
DpnII	GATC	6 cut(s)	649, 860, 949, 1721, 1783, 2017
DraI	TTTAAA	1 cut(s)	1168
EaeI	YGGCCR	2 cut(s)	426, 1297
Eam1104I	CTCTTC	3 cut(s)	853, 1542, 2133
EarI	CTCTTC	3 cut(s)	853, 1542, 2133
Ecl136II	GAGCTC	2 cut(s)	1604, 1858
Eco130I	CCWWGG	3 cut(s)	1300, 1309, 2174
Eco147I	AGGCCT	1 cut(s)	1911
Eco24I	GRGCYC	4 cut(s)	896, 984, 1606, 1860
Eco31I	GGTCTC	1 cut(s)	1466
Eco32I	GATATC	2 cut(s)	934, 1654
Eco47I	GGWCC	4 cut(s)	477, 712, 771, 1846
Eco53kI	GAGCTC	2 cut(s)	1604, 1858
Eco57I	CTGAAG	2 cut(s)	78, 1191
Eco88I	CYCGRG	1 cut(s)	1971
Eco91I	GGTNACC	1 cut(s)	809
EcoICRI	GAGCTC	2 cut(s)	1604, 1858
EcoO109I	RGGNCCY	1 cut(s)	771
EcoO65I	GGTNACC	1 cut(s)	809
EcoRI	GAATTC	1 cut(s)	1499
EcoRII	CCWGG	1 cut(s)	805
EcoRV	GATATC	2 cut(s)	934, 1654
EcoT14I	CCWWGG	3 cut(s)	1300, 1309, 2174
EcoT22I	ATGCAT	2 cut(s)	640, 793
EcoT38I	GRGCYC	4 cut(s)	896, 984, 1606, 1860
ErhI	CCWWGG	3 cut(s)	1300, 1309, 2174
Esp3I	CGTCTC	1 cut(s)	2047
FaeI	CATG	5 cut(s)	630, 1110, 1566, 1766, 2138
FalI	AAGNNNNNCTT	4 cut(s)	1148, 1180, 1470, 1502
FaqI	GGGAC	6 cut(s)	704, 784, 1194, 1407, 1528, 1726
FatI	CATG	5 cut(s)	626, 1106, 1562, 1762, 2134
FauI	CCCGC	1 cut(s)	1035
FblI	GTMKAC	1 cut(s)	1661
Fnu4HI	GCNGC	6 cut(s)	517, 547, 1018, 1196, 1626, 1629
FokI	GGATG	7 cut(s)	545, 936, 1020, 1026, 1997, 2192, 2225
FriOI	GRGCYC	4 cut(s)	896, 984, 1606, 1860
Fsp4HI	GCNGC	6 cut(s)	517, 547, 1018, 1196, 1626, 1629
FspBI	CTAG	6 cut(s)	65, 272, 588, 815, 966, 1890
GlaI	GCGC	1 cut(s)	1574
GluI	GCNGC	6 cut(s)	517, 547, 1018, 1196, 1626, 1629
GsuI	CTGGAG	3 cut(s)	284, 1887, 1958
HaeIII	GGCC	5 cut(s)	428, 1299, 1308, 1894, 1911
HapII	CCGG	5 cut(s)	468, 953, 1599, 1787, 2199
HhaI	GCGC	1 cut(s)	1575
Hin1II	CATG	5 cut(s)	630, 1110, 1566, 1766, 2138
Hin6I	GCGC	1 cut(s)	1573
HinP1I	GCGC	1 cut(s)	1573
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	5 cut(s)	491, 665, 1940, 2095, 2237
HpaII	CCGG	5 cut(s)	468, 953, 1599, 1787, 2199
HphI	GGTGA	6 cut(s)	307, 427, 821, 1223, 1397, 2104
Hpy166II	GTNNAC	5 cut(s)	358, 402, 1321, 1495, 1662
Hpy188I	TCNGA	7 cut(s)	79, 305, 481, 898, 1542, 1887, 2156
Hpy8I	GTNNAC	5 cut(s)	358, 402, 1321, 1495, 1662
HpyAV	CCTTC	4 cut(s)	281, 328, 576, 589
HpyCH4III	ACNGT	7 cut(s)	39, 556, 884, 1274, 1318, 1649, 2011
HpyCH4IV	ACGT	1 cut(s)	1827
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 101, 110, 1305, 1334, 1595, 1700, 2021
HpyF3I	CTNAG	2 cut(s)	897, 1368
HpySE526I	ACGT	1 cut(s)	1827
Hsp92II	CATG	5 cut(s)	630, 1110, 1566, 1766, 2138
HspAI	GCGC	1 cut(s)	1573
Kpn2I	TCCGGA	2 cut(s)	952, 1786
Kzo9I	GATC	6 cut(s)	649, 860, 949, 1721, 1783, 2017
LguI	GCTCTTC	1 cut(s)	853
LmnI	GCTCC	3 cut(s)	173, 727, 1601
Lsp1109I	GCAGC	6 cut(s)	528, 533, 1029, 1207, 1615, 1637
LweI	GCATC	5 cut(s)	83, 800, 914, 1004, 1957
MaeI	CTAG	6 cut(s)	65, 272, 588, 815, 966, 1890
MaeII	ACGT	1 cut(s)	1827
MalI	GATC	6 cut(s)	651, 862, 951, 1723, 1785, 2019
MboI	GATC	6 cut(s)	649, 860, 949, 1721, 1783, 2017
MfeI	CAATTG	1 cut(s)	2232
MflI	RGATCY	3 cut(s)	860, 949, 1783
MhlI	GDGCHC	4 cut(s)	896, 984, 1606, 1860
MlsI	TGGCCA	2 cut(s)	428, 1299
MluNI	TGGCCA	2 cut(s)	428, 1299
MlyI	GAGTC	2 cut(s)	674, 1949
MmeI	TCCRAC	1 cut(s)	2067
Mox20I	TGGCCA	2 cut(s)	428, 1299
Mph1103I	ATGCAT	2 cut(s)	640, 793
MroI	TCCGGA	2 cut(s)	952, 1786
MroXI	GAANNNNTTC	2 cut(s)	1160, 1551
MscI	TGGCCA	2 cut(s)	428, 1299
MslI	CAYNNNNRTG	2 cut(s)	1440, 1561
Msp20I	TGGCCA	2 cut(s)	428, 1299
MspA1I	CMGCKG	1 cut(s)	1628
MspCI	CTTAAG	1 cut(s)	1576
MspI	CCGG	5 cut(s)	468, 953, 1599, 1787, 2199
MspR9I	CCNGG	3 cut(s)	469, 807, 2200
MunI	CAATTG	1 cut(s)	2232
MvaI	CCWGG	1 cut(s)	807
MvnI	CGCG	1 cut(s)	1042
MwoI	GCNNNNNNNGC	8 cut(s)	80, 101, 110, 1305, 1334, 1595, 1700, 2021
NciI	CCSGG	2 cut(s)	469, 2200
NdeII	GATC	6 cut(s)	649, 860, 949, 1721, 1783, 2017
NlaIII	CATG	5 cut(s)	630, 1110, 1566, 1766, 2138
NlaIV	GGNNCC	6 cut(s)	203, 256, 772, 862, 951, 1785
NmuCI	GTSAC	4 cut(s)	215, 653, 809, 1823
NsiI	ATGCAT	2 cut(s)	640, 793
PaeR7I	CTCGAG	1 cut(s)	1971
PagI	TCATGA	1 cut(s)	2134
PceI	AGGCCT	1 cut(s)	1911
PciSI	GCTCTTC	1 cut(s)	853
PdmI	GAANNNNTTC	2 cut(s)	1160, 1551
PfeI	GAWTC	3 cut(s)	491, 2095, 2237
PflFI	GACNNNGTC	1 cut(s)	716
PkrI	GCNGC	6 cut(s)	518, 548, 1019, 1197, 1627, 1630
PleI	GAGTC	2 cut(s)	673, 1948
PpsI	GAGTC	2 cut(s)	673, 1948
PpuMI	RGGWCCY	1 cut(s)	771
PshBI	ATTAAT	2 cut(s)	189, 1404
PsiI	TTATAA	1 cut(s)	999
Psp124BI	GAGCTC	2 cut(s)	1606, 1860
Psp5II	RGGWCCY	1 cut(s)	771
Psp6I	CCWGG	1 cut(s)	805
PspEI	GGTNACC	1 cut(s)	809
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	6 cut(s)	203, 256, 772, 862, 951, 1785
PspPI	GGNCC	4 cut(s)	477, 712, 771, 1846
PspPPI	RGGWCCY	1 cut(s)	771
PspXI	VCTCGAGB	1 cut(s)	1971
PstI	CTGCAG	4 cut(s)	409, 979, 1591, 1627
PstNI	CAGNNNCTG	1 cut(s)	2015
PsuI	RGATCY	3 cut(s)	860, 949, 1783
PsyI	GACNNNGTC	1 cut(s)	716
PvuII	CAGCTG	1 cut(s)	1628
RsaI	GTAC	8 cut(s)	55, 63, 270, 1118, 1315, 1761, 1768, 1793
RsaNI	GTAC	8 cut(s)	54, 62, 269, 1117, 1314, 1760, 1767, 1792
RseI	CAYNNNNRTG	2 cut(s)	1440, 1561
SacI	GAGCTC	2 cut(s)	1606, 1860
SapI	GCTCTTC	1 cut(s)	853
SatI	GCNGC	6 cut(s)	517, 547, 1018, 1196, 1626, 1629
Sau3AI	GATC	6 cut(s)	649, 860, 949, 1721, 1783, 2017
Sau96I	GGNCC	4 cut(s)	477, 712, 771, 1846
ScaI	AGTACT	3 cut(s)	55, 63, 1793
SchI	GAGTC	2 cut(s)	674, 1949
ScrFI	CCNGG	3 cut(s)	469, 807, 2200
SduI	GDGCHC	4 cut(s)	896, 984, 1606, 1860
SfaNI	GCATC	5 cut(s)	83, 800, 914, 1004, 1957
SfcI	CTRYAG	4 cut(s)	405, 975, 1587, 1623
SfiI	GGCCNNNNNGGCC	1 cut(s)	1305
Sfr274I	CTCGAG	1 cut(s)	1971
SinI	GGWCC	4 cut(s)	477, 712, 771, 1846
SlaI	CTCGAG	1 cut(s)	1971
SmiMI	CAYNNNNRTG	2 cut(s)	1440, 1561
SmlI	CTYRAG	4 cut(s)	865, 1151, 1576, 1971
SmoI	CTYRAG	4 cut(s)	865, 1151, 1576, 1971
SpeI	ACTAGT	2 cut(s)	64, 587
SseBI	AGGCCT	1 cut(s)	1911
SsiI	CCGC	2 cut(s)	417, 1042
SspI	AATATT	1 cut(s)	691
SspMI	CTAG	6 cut(s)	65, 272, 588, 815, 966, 1890
SstI	GAGCTC	2 cut(s)	1606, 1860
StuI	AGGCCT	1 cut(s)	1911
StyD4I	CCNGG	3 cut(s)	467, 805, 2198
StyI	CCWWGG	3 cut(s)	1300, 1309, 2174
TaaI	ACNGT	7 cut(s)	39, 556, 884, 1274, 1318, 1649, 2011
TaiI	ACGT	1 cut(s)	1830
TaqI	TCGA	3 cut(s)	1854, 1943, 1972
TaqII	GACCGA	1 cut(s)	1490
TatI	WGTACW	5 cut(s)	53, 61, 1116, 1759, 1791
TfiI	GAWTC	3 cut(s)	491, 2095, 2237
TscAI	CASTG	7 cut(s)	232, 337, 409, 709, 1078, 1941, 2227
TseFI	GTSAC	4 cut(s)	215, 653, 809, 1823
TseI	GCWGC	6 cut(s)	516, 546, 1017, 1195, 1625, 1628
Tsp45I	GTSAC	4 cut(s)	215, 653, 809, 1823
TspRI	CASTG	7 cut(s)	232, 337, 409, 709, 1078, 1941, 2227
Tth111I	GACNNNGTC	1 cut(s)	716
Vha464I	CTTAAG	1 cut(s)	1576
VpaK11BI	GGWCC	4 cut(s)	477, 712, 771, 1846
VspI	ATTAAT	2 cut(s)	189, 1404
XapI	RAATTY	2 cut(s)	679, 1499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	706
XhoI	CTCGAG	1 cut(s)	1971
XmiI	GTMKAC	1 cut(s)	1661
XmnI	GAANNNNTTC	2 cut(s)	1160, 1551
XspI	CTAG	6 cut(s)	65, 272, 588, 815, 966, 1890
ZrmI	AGTACT	3 cut(s)	55, 63, 1793
Zsp2I	ATGCAT	2 cut(s)	640, 793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.