FvH4_6g43880

pre-mRNA-processing-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000798
Physical Location & Seq
Forward (+)
33907929 .. 33914779
6851 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43880.t1

Sequence Viewer

Length: 6573 bp
ATGTGGAACAACACCGAAATTCCACCGCCGGCGACGACCTGCGAATCCACGATTCCACCACCGGCCGATCTGGACGAGAAGGCCCGCAGATGGCAGCAGCTCTCCTCCCGCAAGTGGTCATCCACCCGCCACGGCGAACGGCGCGTCGTCGATTCGCGAAAGGAGGACATGCCGCCGGAGCACGTGAGGAAGATCATCAAAGAGCACGGCGACATGTCGTCCAGGAAGTACCGGCACGACAAGCGCGTCTACCTCGGCGCTCTCAAGTTCATCCCTCACGCCGTGTACAAGCTCCTGGAGAATATGCCGGTGCCGTGGGAGCAGGTCCGTAACGTGAAGGTGCTGTACCATATCACCGGAGCGATTACATTCGTGAACGAGACGCCGCTGGTTGTGGAGCCGATCTACATGGCGCAGTGGGCCACAATGTGGATCATGATGCGGAGGGAGAAGAGGGATCGCCGGCAATTCAAGAGAATGAGGTTTCCGGCGTTCGATGACGAGGAGCCTGTGCTGGATTATGCTGATAATTTGCTAGATGTTGAGCCGCTCGAGGCGATTCAGCTTGAGCTGGACAAGGATGAGGATTCTGCTGTGTATGACTGGTTTTATGACCATAAGCCTCTAGTGAAGACCAGGATGGTGAATGGGCCGGGTTACAGGAAGTGGCAGCTCTCGCTGCCGATTATGGAGGCTCTTTACAGGCTTTCTGGACAGGTAATTTCCAATTTGACTGACAGGAACTATTTCTATTTGTTTGATAAAGAGTCGTTTCTGACAGCCAAGGCATTGAATATTTGTATACCAGGTGGGCCAAAATTCGAGCCGTTGTTTAGGGATACGGAGACAGGGGAGGAGGATTGGAATGAGTTTAATGACATAAACAAGCTCATTATTCGGTCTCCGCTGAGATCAGAGTACAGGATTGCATTCCCTAGTCTTTACAATAGCCGGCCCAGGAAGGTAAAGCTCTCTGTTTATCACACACCTATGGTTATGCATATTAAATCTGAGGATCCTGATCTGCCTGCATTTTATTATGATCCATTGCTAAACACAATACCTAGCACTAACCGGAACAGTTATGATAGTTGTGAGGAAGATGATGAATTTGTTTTGCCTGAAGGGGTGGAGCCTCTTTTGAGTCATACTGAGCTTTATACTGATACCACTGCTGCTGGGATTTCCCTGTTTTTTGCACCATGCCCTTTTAACATGAGGTCTGGGAGGACTCGTCGGGCACAGGATATTCCTCTTGTGTCAGAGTGGTTTAAGGAGCATTGTCCTCAGTCTTATCCAGTTAAAGTTCGAGTCAGCTATCAGAAGTTGTTGAAATCTTTTGTGTTGAATGAGGTGCATCGTAGGCCTCCCAAGGCACACACGAAGAAGGACTTGTTTCGTTCTCTTCAGGCTACTAAGTTTTTCCAGACTACTGAGCTTGATTGGGTTGAAGCGGGTCTTCAAGTCTGTAAGCAGGGTCATAACATGCTGAATCTGTTGATACATAGGAAAGGTCTGAACTACCTTCACCTTGATTATAATTTTAATCTCAAGCCTGTGAAAACCCTGACAACAAAAGAGCGCAAGAAATCTCGGTTTCGTAATGCTTTTCATCTGTTGCGTGAAATCTTGCGGTTGACAAAGCTTGTAGTTGATGCTCAGGTCCAGTTCCGTTTGGGTAATGTTGATGCCTTTCAACTGGCTGATGGTCTGCAGTACATGTTTTCTCATGTTGGTCAGTTAACTGGAATGTACCGTTACAAGTACAGGTTGATGCGGCAGATTAGAATGACCAAAGATTTGAAGCACTTGATTTACTACCGTTTCAAGACTGGGCCGGTCGGAAAAGGGCCGGGATGTGGATTCTGGGCACCAATGTGGAGGGTGTGGCTGTTCTTCCTTCGTGGCATAGTCCCTCTTCTGGAACGGTGGTTGGGAGGTTTACTTGCTAGACAATTTGTAGGGCGACATTCTGTGGCAAAGAGAGTAACTAAGCAGCGTGTCGAAAGCAATTTTGAACTGGAGTATCGAGCAGCTGTCTTGAAAGATATTCTGGATGCGATGCCAGCGGGCATGAAGCAAAATAAGGCGAAAACAATTATGCAGCATCTCAGTGAGGCATGGCGTTGTTGGAAAGCAAATATTCCATGGAAGGTTCCTGGTATGCCTGCTCCCGTTGAGAATATAATTCTTCGTTATGTCAAGGCAAAGGCAGATTGGTGGACACATGGTGCTCATTATAACCGTGAACGTATTAAAAGAGGTGCTACAGTGGATAAGACAGTTTGTCGAAAGAATCTCGGAAGATTAACTCGCCTTTGGCTAAAGGGAGAGCAGGAGCGACAACACAATTATCTCAAAGATGGTCCATATATTTCAACAGAAGCAGTGTCAATTTACACAACTACTAGGTTGAAGGAATCTTATACTGGAGCAGTAAAATTGAACCAGCATCAAAGAGAGGAGTTGGGTCTCATTGAACAAGCCTATGATAACCCCCATGAGGCGTTGATACGGATAAAACGTCACTTGATATCACAGCGTGCCTTCAAAGATGTGAGCATAGAGTTCATGGATCTGTACAGCCATCATATTCCAGTTTTTGAGATTGATCCTCTTGAGAAGATTACAGATGCATATCTTGATCAATATCTGTGGTATGAGGCTGACAAACGTCAGCTCTTCCCAAACTGGATCAAGCCTGCAGACTCAGAGCCACCCCCACTTTTGGTCTACAAATGGTGTCAGGGAATAAACAATCTAGAGAATATATGGGACACAAGTGAGGGGGAGTGTGTGGTGATGCTTCAGACAATGCTTGAGAGATTTTCTGAAAAGATTGACTTGACACTGCTAAATAAGCTTCTACGTCTTGTTCTTGACAACAACCTTGCTGATTACATCACTGCAAAAAACAATTATTATGGGCTGGTTTTGGATCTAATGCTTCTTGGATTGACTCAGGCCAGTGAAATTGCAGGTCCACGGCTGAAGCCGAATGAGTTCATGACTTATGGGGACACAAAGGTTGAGACTCACCATCCTATCAAGGTGTACTCTCGATACATAGACAGGGTGCATATCTTATTCCGCTTCACTCACGAAGAGGCTAGGGACCTTATCCAGCGATATCTTACTGAGCATCCAGATCCGAATAATGAAAATATGGTTGGATATAATAATAAGAAGTGCTGGCCAAGAGATGCAAGGATGAGGCTCCTGAAACATGATGTCAATCTTGGAAGGAGTGTCTTTTGGAATGTCAAGAACCGTCTCCCTCGAAGCATAACAAGTTTGGAATGGGACAACAGCTTGGTTTCTGTTTACAGCAAGGAAAATCCAAATTTACACTTCAGCATGTGTGGATTTGAAGTGAGAATACTTCCCAAGATAAGAATGAGTACGAAGGAACACCAAAGAGATGGAGTTTGGAACTTGCAGAATGAACAGACAAAGGAAAGGACTGCTGTTGCTTTTCTACGTGTTGATGATGAATACATGAAGGCATTTGAGAATCGTGTAAGGCAGATCCTCATGTCCTCAGGGTCTACAACCTTCACAAAAGTTATCAACAAATGGAATACAGCCCTTATTGGTCTTATGACTTACTTCCGTGAAGCAGTTGTGCATACACCAGAGCTGTTAGATTTACTGGTCAAATGTGAAAATAAAATTCAGACCCGCATTAAGATTGGATTGAATTCCAAGATGCCAAGCAGATTTCCACCTGTCATTTTTTACACTCCAAAAGAAATTGGAGGACTTGGCATGTTATCTATGGGTCACATATTGATTCCACAGAGTGACCTCAGATACTCTCGGCAGACGGAAATTGGTGTGACACACTTTAGGAGTGGAATGAGTCATGAAGAGGAGCAGCTGATTCCAAATCTTTACCGTTACATACAACCATGGGAGAGTGAGTTTGTAGATTCACAGCGTGTTTGGGCAGAATATGCACTAAAAAGGAAGGAAGCTCTGGCACAAAATCGGCGTCTTACCCTTGAAGATTTGGAAGATTCATGGGATAGGGGAATACCACGCATAAATACATTGTTCCAGAAGGATCGACACACTTTAGCATATGACAAAGAGTGGAGAGTCCGCACAGATTTTAAGAAGTACCAAATCTTGAAGCAAAATCCTTTCTGGTGGACACACCAAAAGCATGATGGGAAATTATGGAATCTCAACAATTATAGAACTGATGTGATCCAAGCTCTTGGAGGAGTTGAGGGAATACTTGAACACACCTTATTCAAAGGTACATACTTCCCTACTTGGGAGGGTCTCTTCTGGGAAAAGGCATCTGGATTTGAGGAATCGATGAAGTATAAAAAGTTGACAAATGCTCAAAGATCTGGCCTCAACCAAATCCCCAATCGTAGGTTCACACTTTGGTGGTCGCCTACCATAAATCGAGCCAATGTCTATGTCGGTTTTCAAGTGCAGCTGGATCTAACTGGAATATTTATGCATGGGAAGATCCCAACCTTGAAGATATCACTGATTCAGATATTCCGTGCACACTTGTGGCAGAAGATTCATGAAAGTGTTGTGATGGATCTTTGTCAGGTTTTGGATCAGGAATTGGATGCTTTGGAAATTGAGACTGTGCAGAAGGAAACCATACATCCCAGGAAGAGTTACAAAATGAACAGCTCTTGTGCAGACATTCTTCTCTTTTCTGCTCATAAATGGCAAATGTCAAAACCTAGTCTTGTGGCTGAGCCAAAGGACGAGTATGATCAGAAAACAAGCAGTAAGTACTGGATAGATGTGCAACTCCGTTGGGGAGATTATGATTCTCATGATATTGAACGTTACACCAGGGCGAAGTTTATGGACTATACGACTGATAACATGTCTATCTATCCTTCTCCGACAGTAGTGATGATTGGAATTGATTTAGCTTATAATGTGCATTCTGCCTTTGGTAACTGGTTTCCTGGATCAAAACCACTGATTCAACAGGCAATGAACAAGATCATGAAGTCAAATCCAGCATTATATGTGTTGAGGGAGCGTATAAGGAAAGGATTGCAGTTGTATTCCTCTGAGCCTACAGAGCCATATTTGTCTTCCCAAAACTATGGGGAGCTCTTCAGCAATCAAATTAAATGGGACTGGGCAGCTGTTCTTGAAGGTTATCCACACGAGTGTGTGTGGGCAGGACAGAAGCAACTTGGGCAGTTGGCTAAGTGGAAAACTGCAGAAGAAGTTGCTGCTCTTGTGCGTTCTCTACCTGTTGAAGAACAGCCAAAGCACATTATTGTGACTCGTAAGGGAATGCTCGACCCATTGGAGGTTCACTTGCTGGATTTCCCAAACATAATTATAAAAGGAAGTGAACTGCAGCTTCCATTCCAGGTTTGCTTGAAAATTGAGAAGTTGAATGATCTGGTACTAAAGGCTACTGAGCCACAGATGGTTCTTTTTAATGTCTACGATGATTGGTTGAAGAGTGTTTCATCATATACTGCATTCTCTCGGCTCATTCTGATTCTTCGGGCACTACATGTGAACAGAGACAAAGCAAGTATGTTGTTGAAGCCTGACCGTACAGTCATTAGTGAGCCACACCACATTTGGCCTTCTCTTTCTGATGAGCAATGGATGAAGGTTGAGCGTGCTCTAACAGATCTCATACTGTCAGACTATGGTAAAAAGAATAATGTGAGTACATCAGCCCTCACACAGTCTGAGATTCGTGATATAATACTTGGAGCAGAGATTACTCCACCGTCTCAACAGAGGCAAGAGATAGCCGAGATTGAGAAACAGGCTAGAGAAGCAAGTCAGCTGACAGCACTCACCACAAGGACCACAAATGTGCATGGAGATGAGCTTATTTCCACCACTACTAGTCAATATGAGCAAGCTTCATTCAGGTCCAAAACTGATTGGCGTGTGAGAGCAGTATCAGCCACAAATCTACATCTTCGTGTCAACCATATATATGTGAGTTCAGAAGATACAAAGGAAGCGAGTTACACATACATCATGCCAATGAACATTTTGAAAAAGTTTATCTGTGTTTCTGATCTGAGGACACAAATTGCTGGTTACTTGTATGGTATAAGCCCACCTGACAACCCTCAGGTTAAGGAAATCCGCTGCATTGTGATGCCACCACAGTGGGGCACCCATCAGCAAGTTCATCTTCCATCAACTCTTCCTGAGCATGATTTTCTCAATTGTTTGGAACCTCTGGGATGGATGCACACCCAGCCAAATGAACAACCTCAGCTTTCTCCTGAGGATTTGACAGCTCATACTAACATGTTGGAGAATTCAAAGCAGTGGGATAGGGAGAAATGCATTATTATGACCTGTGCTTTTACTCCAGGTTCCTGCTCGTTAACTGCGTATAAAGTTACTCCATCTGGTTATGAGTGGGGATGTTATTCTAATAAGAACACCGGAAGAAACAGTAATCCACTAGGTGGATACCTTCCAACTCACTATCAGAAGGTCCAGATGCTTCTCACTGACCGCTTCCTTGGTTTCTACATGATTCCTGATGATTGTCCATGGAACTTCAATTTCATGGGAGTGAGGCATGTGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000380 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

2191

Amino Acids

256.15

Weight (kDa)

8.95

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRO8NT PF08082 54 - 205 2.3e-83 PRO8NT (NUC069), PrP8 N-terminal domain
PROCN PF08083 389 - 792 1.8e-223 PROCN (NUC071) domain
RRM_4 PF10598 945 - 973 6e-08 RNA recognition motif of the spliceosomal PrP8
RRM_4 PF10598 974 - 1007 2.2e-08 RNA recognition motif of the spliceosomal PrP8
U5_2-snRNA_bdg PF10597 1167 - 1302 8.4e-75 U5-snRNA binding site 2 of PrP8
U6-snRNA_bdg PF10596 1372 - 1530 6.5e-89 U6-snRNA interacting domain of PrP8
PRP8_domainIV PF12134 1719 - 1885 5e-84 PRP8 domain IV core
JAB PF01398 1998 - 2094 1.5e-09 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
PROCT PF08084 2108 - 2188 1.2e-24 PROCT (NUC072) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 1539, 2241, 4917, 5339
AasI GACNNNNNNGTC 2 cut(s) 245, 5564
Acc36I ACCTGC 3 cut(s) 47, 313, 2969
AccB1I GGYRCC 3 cut(s) 310, 1870, 6143
AccB7I CCANNNNNTGG 2 cut(s) 429, 6446
AccBSI CCGCTC 1 cut(s) 550
AccI GTMKAC 5 cut(s) 249, 802, 2733, 3548, 5445
AccII CGCG 3 cut(s) 144, 157, 246
AclI AACGTT 1 cut(s) 4822
AcoI YGGCCR 2 cut(s) 63, 3194
AcsI RAATTY 7 cut(s) 18, 818, 1109, 3343, 3672, 3700, 6292
AcuI CTGAAG 6 cut(s) 1143, 1391, 2792, 3011, 3337, 5089
AcvI CACGTG 1 cut(s) 184
AcyI GRCGYC 2 cut(s) 383, 3994
AdeI CACNNNGTG 7 cut(s) 283, 429, 2231, 2543, 3803, 3941, 6446
AflIII ACRYGT 6 cut(s) 213, 1719, 3481, 4863, 5518, 6282
AhdI GACNNNNNGTC 2 cut(s) 217, 2286
AhlI ACTAGT 1 cut(s) 5864
AjuI GAANNNNNNNTTGG 4 cut(s) 3153, 3185, 4373, 4405
AleI CACNNNNGTG 7 cut(s) 1876, 4399, 4531, 5158, 5160, 5831, 6136
Alw21I GWGCWC 6 cut(s) 183, 207, 2236, 4528, 5103, 5635
Alw44I GTGCAC 1 cut(s) 4524
Ama87I CYCGRG 1 cut(s) 551
ApaLI GTGCAC 1 cut(s) 4524
ApoI RAATTY 7 cut(s) 18, 818, 1109, 3343, 3672, 3700, 6292
ArsI GACNNNNNNTTYG 6 cut(s) 129, 161, 1783, 1815, 3979, 4011
Asp700I GAANNNNTTC 2 cut(s) 746, 3002
AspLEI GCGC 5 cut(s) 144, 246, 260, 415, 1584
AsuC2I CCSGG 2 cut(s) 654, 1854
AsuHPI GGTGA 6 cut(s) 346, 655, 1520, 2812, 3029, 5806
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 8 cut(s) 325, 1663, 2366, 2981, 3115, 5823, 5892, 6475
AxyI CCTNAGG 3 cut(s) 3541, 6099, 6258
BaeGI GKGCMC 5 cut(s) 1243, 1873, 4528, 5515, 6146
BaeI ACNNNNGTAYC 2 cut(s) 2009, 2042
BalI TGGCCA 1 cut(s) 3196
BamHI GGATCC 1 cut(s) 1015
BanI GGYRCC 3 cut(s) 310, 1870, 6143
BanII GRGCYC 1 cut(s) 5103
BarI GAAGNNNNNNTAC 4 cut(s) 329, 361, 3363, 3395
BauI CACGAG 1 cut(s) 5156
BbrPI CACGTG 1 cut(s) 184
BbsI GAAGAC 3 cut(s) 638, 1451, 5073
Bbv12I GWGCWC 6 cut(s) 183, 207, 2236, 4528, 5103, 5635
BbvCI CCTCAGC 1 cut(s) 6246
BceAI ACGGC 7 cut(s) 148, 155, 223, 266, 298, 811, 3002
BciVI GTATCC 2 cut(s) 832, 6443
BclI TGATCA 2 cut(s) 2644, 4747
BcnI CCSGG 2 cut(s) 654, 1854
BcuI ACTAGT 1 cut(s) 5864
BfmI CTRYAG 6 cut(s) 1712, 2268, 2703, 5064, 5211, 5354
BfoI RGCGCY 1 cut(s) 261
BfuAI ACCTGC 3 cut(s) 47, 313, 2969
BfuI GTATCC 2 cut(s) 832, 6443
BglII AGATCT 2 cut(s) 4358, 5641
BlpI GCTNAGC 1 cut(s) 4728
BmcAI AGTACT 1 cut(s) 4769
Bme18I GGWCC 8 cut(s) 325, 1663, 2366, 2981, 3115, 5823, 5892, 6475
BmeRI GACNNNNNGTC 2 cut(s) 217, 2286
BmeT110I CYCGRG 1 cut(s) 551
BmrI ACTGGG 2 cut(s) 1842, 5137
BmuI ACTGGG 2 cut(s) 1842, 5137
BoxI GACNNNNGTC 1 cut(s) 2673
BpiI GAAGAC 3 cut(s) 638, 1451, 5073
BpmI CTGGAG 4 cut(s) 317, 2042, 2451, 6330
Bpu10I CCTNAGC 3 cut(s) 1659, 6180, 6246
Bpu1102I GCTNAGC 1 cut(s) 4728
BpuEI CTTGAG 5 cut(s) 248, 587, 1535, 2639, 2840
BpuMI CCSGG 2 cut(s) 654, 1854
Bsa29I ATCGAT 1 cut(s) 4325
BsaAI YACGTR 2 cut(s) 184, 3482
BsaBI GATNNNNATC 4 cut(s) 1020, 2637, 2649, 3234
BsaHI GRCGYC 2 cut(s) 383, 3994
BsaI GGTCTC 3 cut(s) 906, 2477, 4295
BsaWI WCCGGW 3 cut(s) 356, 1074, 6422
BsaXI ACNNNNNCTCC 4 cut(s) 1219, 1249, 3908, 3938
Bse118I RCCGGY 7 cut(s) 28, 61, 231, 307, 462, 951, 1837
Bse21I CCTNAGG 3 cut(s) 3541, 6099, 6258
Bse3DI GCAATG 3 cut(s) 1046, 4983, 5618
Bse8I GATNNNNATC 4 cut(s) 1020, 2637, 2649, 3234
BseCI ATCGAT 1 cut(s) 4325
BseJI GATNNNNATC 4 cut(s) 1020, 2637, 2649, 3234
BseMI GCAATG 3 cut(s) 1046, 4983, 5618
BseRI GAGGAG 6 cut(s) 94, 518, 869, 2477, 3887, 4242
BseSI GKGCMC 5 cut(s) 1243, 1873, 4528, 5515, 6146
BseX3I CGGCCG 1 cut(s) 63
BseYI CCCAGC 2 cut(s) 1178, 6228
BsgI GTGCAG 3 cut(s) 4469, 4637, 4689
Bsh1236I CGCG 3 cut(s) 144, 157, 246
Bsh1285I CGRYCG 2 cut(s) 66, 1842
BshNI GGYRCC 3 cut(s) 310, 1870, 6143
BshVI ATCGAT 1 cut(s) 4325
BsiEI CGRYCG 2 cut(s) 66, 1842
BsiHKAI GWGCWC 6 cut(s) 183, 207, 2236, 4528, 5103, 5635
BsiHKCI CYCGRG 1 cut(s) 551
BslFI GGGAC 6 cut(s) 1898, 2789, 3032, 3128, 3317, 5138
BsmBI CGTCTC 3 cut(s) 374, 3278, 5751
BsmFI GGGAC 6 cut(s) 1898, 2789, 3032, 3128, 3317, 5138
BsmI GAATGC 4 cut(s) 929, 4924, 5295, 5483
Bso31I GGTCTC 3 cut(s) 906, 2477, 4295
BsoBI CYCGRG 1 cut(s) 551
Bsp1407I TGTACA 2 cut(s) 285, 2580
Bsp1720I GCTNAGC 1 cut(s) 4728
Bsp19I CCATGG 3 cut(s) 2147, 3911, 6533
Bsp68I TCGCGA 1 cut(s) 157
BspDI ATCGAT 1 cut(s) 4325
BspFNI CGCG 3 cut(s) 144, 157, 246
BspHI TCATGA 6 cut(s) 435, 3006, 3865, 4546, 4810, 4989
BspMAI CTGCAG 4 cut(s) 1716, 2707, 5215, 5358
BspMI ACCTGC 3 cut(s) 47, 313, 2969
BspQI GCTCTTC 2 cut(s) 2687, 5108
BspT107I GGYRCC 3 cut(s) 310, 1870, 6143
BspTNI GGTCTC 3 cut(s) 906, 2477, 4295
BsrBI CCGCTC 1 cut(s) 550
BsrDI GCAATG 3 cut(s) 1046, 4983, 5618
BsrFI RCCGGY 7 cut(s) 28, 61, 231, 307, 462, 951, 1837
BsrGI TGTACA 2 cut(s) 285, 2580
BssAI RCCGGY 7 cut(s) 28, 61, 231, 307, 462, 951, 1837
BssNAI GTATAC 1 cut(s) 803
BssNI GRCGYC 2 cut(s) 383, 3994
BssSI CACGAG 1 cut(s) 5156
BssT1I CCWWGG 6 cut(s) 783, 1371, 2147, 3911, 6502, 6533
Bst1107I GTATAC 1 cut(s) 803
Bst2BI CACGAG 1 cut(s) 5156
BstACI GRCGYC 2 cut(s) 383, 3994
BstAPI GCANNNNNTGC 1 cut(s) 3956
BstAUI TGTACA 2 cut(s) 285, 2580
BstBAI YACGTR 2 cut(s) 184, 3482
BstDSI CCRYGG 6 cut(s) 130, 314, 2147, 2984, 3911, 6533
BstFNI CGCG 3 cut(s) 144, 157, 246
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 5 cut(s) 144, 246, 260, 415, 1584
BstMCI CGRYCG 2 cut(s) 66, 1842
BstPAI GACNNNNGTC 1 cut(s) 2673
BstSFI CTRYAG 6 cut(s) 1712, 2268, 2703, 5064, 5211, 5354
BstSLI GKGCMC 5 cut(s) 1243, 1873, 4528, 5515, 6146
BstUI CGCG 3 cut(s) 144, 157, 246
BstV2I GAAGAC 3 cut(s) 638, 1451, 5073
BstXI CCANNNNNNTGG 4 cut(s) 3422, 4223, 5093, 6138
BstZ17I GTATAC 1 cut(s) 803
BstZI CGGCCG 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 4325
Bsu36I CCTNAGG 3 cut(s) 3541, 6099, 6258
BsuI GTATCC 2 cut(s) 832, 6443
BsuTUI ATCGAT 1 cut(s) 4325
BtgI CCRYGG 6 cut(s) 130, 314, 2147, 2984, 3911, 6533
BtgZI GCGATG 1 cut(s) 2075
BtsI GCAGTG 6 cut(s) 422, 1170, 2394, 2849, 2904, 6308
BtuMI TCGCGA 1 cut(s) 157
BveI ACCTGC 3 cut(s) 47, 313, 2969
CciI TCATGA 6 cut(s) 435, 3006, 3865, 4546, 4810, 4989
CfoI GCGC 5 cut(s) 144, 246, 260, 415, 1584
Cfr10I RCCGGY 7 cut(s) 28, 61, 231, 307, 462, 951, 1837
ClaI ATCGAT 1 cut(s) 4325
CseI GACGC 4 cut(s) 133, 235, 391, 3983
CsiI ACCWGGT 1 cut(s) 805
CspCI CAANNNNNGTGG 2 cut(s) 2636, 2671
DraIII CACNNNGTG 7 cut(s) 283, 429, 2231, 2543, 3803, 3941, 6446
DrdI GACNNNNNNGTC 2 cut(s) 245, 5564
DriI GACNNNNNGTC 2 cut(s) 217, 2286
DseDI GACNNNNNNGTC 2 cut(s) 245, 5564
EaeI YGGCCR 2 cut(s) 63, 3194
EagI CGGCCG 1 cut(s) 63
Eam1105I GACNNNNNGTC 2 cut(s) 217, 2286
Ecl136II GAGCTC 1 cut(s) 5101
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 6 cut(s) 783, 1371, 2147, 3911, 6502, 6533
Eco147I AGGCCT 1 cut(s) 1366
Eco24I GRGCYC 1 cut(s) 5103
Eco31I GGTCTC 3 cut(s) 906, 2477, 4295
Eco32I GATATC 3 cut(s) 2535, 3131, 4503
Eco47I GGWCC 8 cut(s) 325, 1663, 2366, 2981, 3115, 5823, 5892, 6475
Eco52I CGGCCG 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 5101
Eco57I CTGAAG 6 cut(s) 1143, 1391, 2792, 3011, 3337, 5089
Eco72I CACGTG 1 cut(s) 184
Eco81I CCTNAGG 3 cut(s) 3541, 6099, 6258
Eco88I CYCGRG 1 cut(s) 551
EcoICRI GAGCTC 1 cut(s) 5101
EcoO109I RGGNCCY 1 cut(s) 3115
EcoRI GAATTC 2 cut(s) 3700, 6292
EcoRV GATATC 3 cut(s) 2535, 3131, 4503
EcoT14I CCWWGG 6 cut(s) 783, 1371, 2147, 3911, 6502, 6533
EcoT22I ATGCAT 4 cut(s) 1002, 2638, 4479, 6323
EcoT38I GRGCYC 1 cut(s) 5103
ErhI CCWWGG 6 cut(s) 783, 1371, 2147, 3911, 6502, 6533
Esp3I CGTCTC 3 cut(s) 374, 3278, 5751
FalI AAGNNNNNCTT 8 cut(s) 1376, 1408, 1443, 1475, 2828, 2860, 6147, 6179
FaqI GGGAC 6 cut(s) 1898, 2789, 3032, 3128, 3317, 5138
FauI CCCGC 6 cut(s) 92, 116, 134, 1447, 2062, 3689
FauNDI CATATG 1 cut(s) 4084
FbaI TGATCA 2 cut(s) 2644, 4747
FblI GTMKAC 5 cut(s) 249, 802, 2733, 3548, 5445
FriOI GRGCYC 1 cut(s) 5103
GlaI GCGC 5 cut(s) 143, 245, 259, 414, 1583
GsaI CCCAGC 2 cut(s) 1182, 6232
GsuI CTGGAG 4 cut(s) 317, 2042, 2451, 6330
HaeII RGCGCY 1 cut(s) 261
HgaI GACGC 4 cut(s) 133, 235, 391, 3983
HhaI GCGC 5 cut(s) 144, 246, 260, 415, 1584
Hin1I GRCGYC 2 cut(s) 383, 3994
Hin6I GCGC 5 cut(s) 142, 244, 258, 413, 1582
HinP1I GCGC 5 cut(s) 142, 244, 258, 413, 1582
HincII GTYRAC 5 cut(s) 1638, 1743, 4344, 5950, 6363
HindII GTYRAC 5 cut(s) 1638, 1743, 4344, 5950, 6363
HindIII AAGCTT 3 cut(s) 1643, 2861, 5880
HpaI GTTAAC 2 cut(s) 1743, 6363
HphI GGTGA 6 cut(s) 346, 655, 1520, 2812, 3029, 5806
Hpy99I CGWCG 4 cut(s) 37, 149, 152, 1239
HpyCH4IV ACGT 8 cut(s) 183, 333, 2251, 2524, 2674, 2869, 3481, 4822
HpySE526I ACGT 8 cut(s) 183, 333, 2251, 2524, 2674, 2869, 3481, 4822
Hsp92I GRCGYC 2 cut(s) 383, 3994
HspAI GCGC 5 cut(s) 142, 244, 258, 413, 1582
KroI GCCGGC 3 cut(s) 28, 462, 951
KroNI GCCGGC 3 cut(s) 30, 464, 953
Ksp22I TGATCA 2 cut(s) 2644, 4747
KspAI GTTAAC 2 cut(s) 1743, 6363
LguI GCTCTTC 2 cut(s) 2687, 5108
MabI ACCWGGT 1 cut(s) 805
MaeII ACGT 8 cut(s) 183, 333, 2251, 2524, 2674, 2869, 3481, 4822
MbiI CCGCTC 1 cut(s) 550
MfeI CAATTG 1 cut(s) 6196
MlsI TGGCCA 1 cut(s) 3196
MluNI TGGCCA 1 cut(s) 3196
MmeI TCCRAC 6 cut(s) 1822, 2111, 3151, 4907, 6267, 6482
Mox20I TGGCCA 1 cut(s) 3196
Mph1103I ATGCAT 4 cut(s) 1002, 2638, 4479, 6323
MreI CGCCGGCG 1 cut(s) 28
MroNI GCCGGC 3 cut(s) 28, 462, 951
MroXI GAANNNNTTC 2 cut(s) 746, 3002
MscI TGGCCA 1 cut(s) 3196
Msp20I TGGCCA 1 cut(s) 3196
MspA1I CMGCKG 9 cut(s) 388, 907, 2036, 2069, 3880, 4453, 5135, 5803, 6117
MunI CAATTG 1 cut(s) 6196
Mva1269I GAATGC 4 cut(s) 929, 4924, 5295, 5483
MvnI CGCG 3 cut(s) 144, 157, 246
NaeI GCCGGC 3 cut(s) 30, 464, 953
NciI CCSGG 2 cut(s) 654, 1854
NcoI CCATGG 3 cut(s) 2147, 3911, 6533
NdeI CATATG 1 cut(s) 4084
NgoMIV GCCGGC 3 cut(s) 28, 462, 951
NmeAIII GCCGAG 4 cut(s) 234, 3799, 5470, 5794
NmuCI GTSAC 6 cut(s) 2525, 3782, 3803, 3838, 5275, 6565
NruI TCGCGA 1 cut(s) 157
NsiI ATGCAT 4 cut(s) 1002, 2638, 4479, 6323
OliI CACNNNNGTG 7 cut(s) 1876, 4399, 4531, 5158, 5160, 5831, 6136
PaeR7I CTCGAG 1 cut(s) 551
PagI TCATGA 6 cut(s) 435, 3006, 3865, 4546, 4810, 4989
PceI AGGCCT 1 cut(s) 1366
PciI ACATGT 5 cut(s) 213, 1719, 4863, 5518, 6282
PciSI GCTCTTC 2 cut(s) 2687, 5108
PcsI WCGNNNNNNNCGW 3 cut(s) 243, 2521, 6365
PctI GAATGC 4 cut(s) 929, 4924, 5295, 5483
PdiI GCCGGC 3 cut(s) 30, 464, 953
PdmI GAANNNNTTC 2 cut(s) 746, 3002
PflMI CCANNNNNTGG 2 cut(s) 429, 6446
PfoI TCCNGGA 3 cut(s) 221, 294, 4948
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
Ppu21I YACGTR 2 cut(s) 184, 3482
PpuMI RGGWCCY 1 cut(s) 3115
PscI ACATGT 5 cut(s) 213, 1719, 4863, 5518, 6282
PshAI GACNNNNGTC 1 cut(s) 2673
PsiI TTATAA 4 cut(s) 1539, 2241, 4917, 5339
Psp124BI GAGCTC 1 cut(s) 5103
Psp1406I AACGTT 1 cut(s) 4822
Psp5II RGGWCCY 1 cut(s) 3115
PspCI CACGTG 1 cut(s) 184
PspFI CCCAGC 2 cut(s) 1178, 6228
PspPPI RGGWCCY 1 cut(s) 3115
PspXI VCTCGAGB 1 cut(s) 551
PstI CTGCAG 4 cut(s) 1716, 2707, 5215, 5358
PvuII CAGCTG 5 cut(s) 2036, 3880, 4453, 5135, 5803
RruI TCGCGA 1 cut(s) 157
SacI GAGCTC 1 cut(s) 5103
SapI GCTCTTC 2 cut(s) 2687, 5108
ScaI AGTACT 1 cut(s) 4769
SexAI ACCWGGT 1 cut(s) 805
SfcI CTRYAG 6 cut(s) 1712, 2268, 2703, 5064, 5211, 5354
Sfr274I CTCGAG 1 cut(s) 551
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 8 cut(s) 325, 1663, 2366, 2981, 3115, 5823, 5892, 6475
SlaI CTCGAG 1 cut(s) 551
SmlI CTYRAG 6 cut(s) 263, 551, 566, 1550, 2618, 2819
SmoI CTYRAG 6 cut(s) 263, 551, 566, 1550, 2618, 2819
SpeI ACTAGT 1 cut(s) 5864
SseBI AGGCCT 1 cut(s) 1366
SspI AATATT 3 cut(s) 796, 2143, 4470
SstI GAGCTC 1 cut(s) 5103
StuI AGGCCT 1 cut(s) 1366
StyI CCWWGG 6 cut(s) 783, 1371, 2147, 3911, 6502, 6533
TaiI ACGT 8 cut(s) 186, 336, 2254, 2527, 2677, 2872, 3484, 4825
TaqII GACCGA 1 cut(s) 888
TatI WGTACW 8 cut(s) 285, 918, 1716, 1764, 2580, 3054, 4767, 5681
TauI GCSGC 4 cut(s) 175, 388, 550, 1780
TseFI GTSAC 6 cut(s) 2525, 3782, 3803, 3838, 5275, 6565
Tsp45I GTSAC 6 cut(s) 2525, 3782, 3803, 3838, 5275, 6565
TspGWI ACGGA 8 cut(s) 317, 857, 1661, 2530, 3602, 3842, 4511, 4778
Van91I CCANNNNNTGG 2 cut(s) 429, 6446
VneI GTGCAC 1 cut(s) 4524
VpaK11BI GGWCC 8 cut(s) 325, 1663, 2366, 2981, 3115, 5823, 5892, 6475
XapI RAATTY 7 cut(s) 18, 818, 1109, 3343, 3672, 3700, 6292
XbaI TCTAGA 1 cut(s) 2761
XcmI CCANNNNNNNNNTGG 2 cut(s) 4169, 5586
XhoI CTCGAG 1 cut(s) 551
XmiI GTMKAC 5 cut(s) 249, 802, 2733, 3548, 5445
XmnI GAANNNNTTC 2 cut(s) 746, 3002
ZrmI AGTACT 1 cut(s) 4769
Zsp2I ATGCAT 4 cut(s) 1002, 2638, 4479, 6323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.