Prupe.7G079800_v2.0.a1

pre-mRNA-processing-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000798
Physical Location & Seq
Reverse (-)
11542763 .. 11544087
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G079800.1

Sequence Viewer

Length: 783 bp
ATGCTCAAGGATTCCCTCAACACCTCCAAGGGCTTGAATAACATCAGTTCGCTCTATTCTTCTGAGCCCACGGAACCATATTTGTCATCCCAAAACTATGGAGAGATCTTCAGCAACCAAATTATTTGGTTTGTTGATGACACAAATGTTTATCGTGTTACGATACATAAAACATTTGAAGGAAATCTCACTACAAAACCCATCAATGGTGCTATTTTCATATTCAATCCAAGGACTGGTCAGCTGTTCCTGAAGGTTATCCACACAAGTGTCTGGGCAGGACAGAAGCGTCTTGGTCAATTGGCCAAGTGGAAAACTGCTGAAGAAGTTGCTGCACTTGTGCGCTCTCTGCCCGTTGAAGAACAGCCGAAGCAAATTATTGTGACTCGTAAGGGAATGTTGGATCCATTGGAGGTTCATTTGCTTGATTTCCCCAACATAATCATAAAAGGAAGTGAGCTGCAGCTTCCTTTCCAGGCTTATCTGAAGATTGAGAAATTTGTTGATAAATTTACTGACTTCTGTATGAACTTGGTTATTTACTGCAGTACAATCACATTGGAATATGTAGAGAGTTATTTCCTTCATTTATTATTATGTTGGCTGGGTGGAGTTAGTTGTCTTCGGTTCTTCATGAGTGTAACTTGGTACCTGATGTGTACATTAATTGTTTTCAGTTGTCTGTTGTATGAGTGCTCTTTATGTACCAGAGAAGCTAATTCTCTGTTTATGATGAATAATAGTTTCTTCCTTCTTCTTCTACGGTGGATGCAGGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000380 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

261

Amino Acids

30.03

Weight (kDa)

6.88

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 288
Acc65I GGTACC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 648
AccB7I CCANNNNNTGG 1 cut(s) 236
AclWI GGATC 2 cut(s) 398, 411
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 2 cut(s) 497, 509
AcuI CTGAAG 4 cut(s) 94, 272, 342, 506
AfaI GTAC 4 cut(s) 550, 650, 661, 706
AfiI CCNNNNNNNGG 2 cut(s) 206, 236
AgsI TTSAA 4 cut(s) 37, 179, 226, 359
AjnI CCWGG 1 cut(s) 474
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 4 cut(s) 244, 460, 466, 716
AluI AGCT 4 cut(s) 244, 460, 466, 716
Alw21I GWGCWC 1 cut(s) 698
AlwI GGATC 2 cut(s) 398, 411
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 3 cut(s) 332, 460, 463
ApoI RAATTY 2 cut(s) 497, 509
AseI ATTAAT 1 cut(s) 665
Asp718I GGTACC 1 cut(s) 648
AspLEI GCGC 1 cut(s) 345
BalI TGGCCA 1 cut(s) 305
BamHI GGATCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 648
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 1 cut(s) 698
BbvI GCAGC 3 cut(s) 319, 447, 475
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 476
BfmI CTRYAG 2 cut(s) 461, 544
BglII AGATCT 1 cut(s) 105
BisI GCNGC 3 cut(s) 333, 461, 464
BlsI GCNGC 3 cut(s) 334, 462, 465
Bme1390I CCNGG 1 cut(s) 476
BmiI GGNNCC 3 cut(s) 75, 405, 650
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 1 cut(s) 759
BpiI GAAGAC 1 cut(s) 614
BsaJI CCNNGG 3 cut(s) 27, 69, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 236
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 3 cut(s) 27, 69, 230
BseGI GGATG 2 cut(s) 86, 774
BseLI CCNNNNNNNGG 2 cut(s) 206, 236
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 3 cut(s) 319, 447, 475
BseYI CCCAGC 1 cut(s) 604
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 698
BslI CCNNNNNNNGG 2 cut(s) 206, 236
BsnI GGCC 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 69, 698
Bsp1407I TGTACA 1 cut(s) 659
Bsp143I GATC 2 cut(s) 105, 403
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 633
BspLI GGNNCC 3 cut(s) 75, 405, 650
BspMAI CTGCAG 2 cut(s) 465, 548
BspPI GGATC 2 cut(s) 398, 411
BspT107I GGYRCC 1 cut(s) 648
BsrGI TGTACA 1 cut(s) 659
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 3 cut(s) 27, 69, 230
BssMI GATC 2 cut(s) 105, 403
BssT1I CCWWGG 2 cut(s) 27, 230
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 765
BstAUI TGTACA 1 cut(s) 659
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 86, 774
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 2 cut(s) 108, 406
BstMBI GATC 2 cut(s) 105, 403
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 474
BstSFI CTRYAG 2 cut(s) 461, 544
BstV1I GCAGC 3 cut(s) 319, 447, 475
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 2 cut(s) 105, 403
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 2 cut(s) 105, 403
BsuRI GGCC 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 2 cut(s) 86, 774
Cac8I GCNNGC 1 cut(s) 774
CciI TCATGA 1 cut(s) 633
CfoI GCGC 1 cut(s) 345
CseI GACGC 1 cut(s) 278
Csp6I GTAC 4 cut(s) 549, 649, 660, 705
CviAII CATG 1 cut(s) 634
CviQI GTAC 4 cut(s) 549, 649, 660, 705
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 107, 405
DpnII GATC 2 cut(s) 105, 403
DrdI GACNNNNNNGTC 1 cut(s) 288
DseDI GACNNNNNNGTC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 303
Eco130I CCWWGG 2 cut(s) 27, 230
Eco24I GRGCYC 1 cut(s) 69
Eco57I CTGAAG 4 cut(s) 94, 272, 342, 506
EcoRII CCWGG 1 cut(s) 474
EcoT14I CCWWGG 2 cut(s) 27, 230
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 27, 230
FaeI CATG 1 cut(s) 637
FatI CATG 1 cut(s) 633
Fnu4HI GCNGC 3 cut(s) 333, 461, 464
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 333, 461, 464
GlaI GCGC 1 cut(s) 344
GluI GCNGC 3 cut(s) 333, 461, 464
GsaI CCCAGC 1 cut(s) 608
HaeIII GGCC 1 cut(s) 305
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 345
Hin1II CATG 1 cut(s) 637
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 2 cut(s) 11, 385
Hpy166II GTNNAC 1 cut(s) 660
Hpy188I TCNGA 2 cut(s) 64, 486
Hpy188III TCNNGA 2 cut(s) 250, 634
Hpy8I GTNNAC 1 cut(s) 660
HpyAV CCTTC 4 cut(s) 173, 247, 593, 761
HpyCH4III ACNGT 1 cut(s) 765
HpyCH4V TGCA 4 cut(s) 335, 463, 546, 772
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 1 cut(s) 637
HspAI GCGC 1 cut(s) 343
KpnI GGTACC 1 cut(s) 652
Kzo9I GATC 2 cut(s) 105, 403
Lsp1109I GCAGC 3 cut(s) 319, 447, 475
LweI GCATC 1 cut(s) 759
MaeIII GTNAC 3 cut(s) 157, 382, 640
MalI GATC 2 cut(s) 107, 405
MboI GATC 2 cut(s) 105, 403
MfeI CAATTG 1 cut(s) 299
MflI RGATCY 2 cut(s) 105, 403
MhlI GDGCHC 2 cut(s) 69, 698
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 7 cut(s) 120, 299, 375, 497, 509, 666, 718
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 3 cut(s) 26, 34, 406
Mox20I TGGCCA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 305
MseI TTAA 1 cut(s) 665
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 476
MunI CAATTG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 349
NdeII GATC 2 cut(s) 105, 403
NlaIII CATG 1 cut(s) 637
NlaIV GGNNCC 3 cut(s) 75, 405, 650
NmuCI GTSAC 1 cut(s) 382
OliI CACNNNNGTG 1 cut(s) 267
PagI TCATGA 1 cut(s) 633
PfeI GAWTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 3 cut(s) 334, 462, 465
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PshBI ATTAAT 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 604
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 3 cut(s) 75, 405, 650
PstI CTGCAG 2 cut(s) 465, 548
PsuI RGATCY 2 cut(s) 105, 403
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 4 cut(s) 550, 650, 661, 706
RsaNI GTAC 4 cut(s) 549, 649, 660, 705
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 665
SatI GCNGC 3 cut(s) 333, 461, 464
Sau3AI GATC 2 cut(s) 105, 403
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 476
SduI GDGCHC 2 cut(s) 69, 698
SetI ASST 8 cut(s) 26, 246, 258, 417, 462, 468, 654, 718
SfaNI GCATC 1 cut(s) 759
SfcI CTRYAG 2 cut(s) 461, 544
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 7 cut(s) 120, 299, 375, 497, 509, 666, 718
StyD4I CCNGG 1 cut(s) 474
StyI CCWWGG 2 cut(s) 27, 230
TaaI ACNGT 1 cut(s) 765
TasI AATT 7 cut(s) 120, 299, 375, 497, 509, 666, 718
TatI WGTACW 2 cut(s) 548, 659
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 665
Tru9I TTAA 1 cut(s) 665
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 3 cut(s) 332, 460, 463
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 6 cut(s) 208, 407, 542, 575, 622, 749
TspGWI ACGGA 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 236
VspI ATTAAT 1 cut(s) 665
XapI RAATTY 2 cut(s) 497, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.