Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000798

Physical Location & Seq

Genomic Coordinates Forward (+)

77999632 .. 78000721

Gene Structure 1090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG549600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAAGGTTGAGCGTGCTCTAACAGATCTCATACTGTCAGACTATGCGAAAAAGAATAATTCTGAAATTCGTGATATAATACTTGGAGCAGAGATTACTCCACCTTCTCAACAGAGGCAAGAGATAGCAGAGATTGAGAAACAGGCTAAAGGAGCTAGTCAGCTGACAGCAGTCACCACAAGGACCACAAACGTGCATGGAGATGAGCTTATTTCCACCACTACGAGTCAATATGAGCAAGCTGCATTCAGGTCCAAAACTGATTGGCGTGTGAGAGCAATATCAGCTACAAATCTACATCTTCGTGTCAACCATATTTATGTGAGTTCAGAAGATACAAAGGAAACATGCTGCACTTACATCATGCCAATGAACATTTTGAAAAAGTTTATCTGTGTTGCTGATCTGAGGACACAAGTTGCTGGTTACTTGTATGGTATAAGCCCACCTGACAACCCTCAGGTTAAGGAAATTCGCTGCATTGTGATGCCACCACAGCGGGGCACCCACCAGCAAGTTCATCTTCCATCAGCTCTTCCTGAGCATGATTTCCTCAATTATTTGGAACCTCTGGGATGGATGCACACCCAGCCAAATGAGCTACCTCAGCTTTCTCCTCAGGATCTCACCACTCATGCTAACATGTTGGAGAATGGCAAGCAATGGGATAGGGAGAAATGCATTATTATGACCTGCGCTTTTACTCCAGGTTCCTGCTCGTTAACTGCATATAAACTTACTCCATCTGGTTATGAGTGGGGATGTTGTTCTAATAAGAACACCGGAAGAAACAATAATCCACTAGATGGATACCTTCCAACTCATTATGAGAAGGTCCAGATGCTTCTCAGTGATCGCTTCCTTGGTTTCTACATGGTTCCTGATAATTGTCCATGGAACTTCAATTTCATGGGAGTGAGGCATGCATGTGACATGAAGTATGGGATCAAGCTTGGACCACCCAAGGAGTACTATCACGAGGAACACCGACCAACCCATTTCATGGAGTTCAGCGAACTAGATAAGGATGACCCGATGGAGTTAGATCGAGATTATGCCTACGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000375 GO:0000377 GO:0000380 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

355

Amino Acids

40.69

Weight (kDa)

5.91

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	123 - 214	1.4e-11	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
PROCT	PF08084	228 - 350	2.9e-44	PROCT (NUC072) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80070 AT4G38780
fragaria_vesca	FvH4_6g29610 FvH4_6g43880
malus_domestica	MD00G1072300.v1.1 MD09G1102200.v1.1 MD09G1102300.v1.1 MD09G1102400.v1.1 MD09G1127100.v1.1 MD09G1127300.v1.1 MD17G1212800.v1.1
prunus_persica	Prupe.3G088200_v2.0.a1 Prupe.3G223400_v2.0.a1 Prupe.7G079800_v2.0.a1
pyrus_communis	pycom12419g00050 pycom12419g00060 pycom12419g00070 pycom12419g00080 pycom17g21760 pycom17g21770 pycom17g21780
rosa_chinensis	RchiOBHm_Chr2g0122691 RchiOBHm_Chr2g0135211 RchiOBHm_Chr2g0160631
rosa_laevigata	RLG00000019448 RLG00000021228 RLG00000021230 RLG00000021231 RLG00000028917 RLG00000028918
rosa_multiflora	Rmu_co8242217.1_g000001 Rmu_co8276149.1_g000001 Rmu_sc0000019.1_g000004 Rmu_sc0000674.1_g000029 Rmu_sc0006535.1_g000005 Rmu_sc0011943.1_g000004 Rmu_sc0018128.1_g000001 Rmu_sc0032732.1_g000001 Rmu_sc0040913.1_g000001 Rmu_sc0040914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037020 Rroxscaffold_2G00089540 Rroxscaffold_2G00109400 Rroxscaffold_2G00121310 Rroxscaffold_4G00310000
rosa_rugosa	Rorug01G0172000 Rorug02G0323800 Rorug02G0484400 Rorug02G0484500 Rorug02G0484600
rosa_samantha	Rh1AG188300 Rh1BG154600 Rh1CG174100 Rh1DG068500 Rh2AG309100 Rh2AG371100 Rh2AG549500 Rh2AG549600 Rh2BG307900 Rh2BG380400 Rh2BG563900 Rh2CG286100 Rh2CG359700 Rh2CG534200 Rh2DG397000 Rh2DG572900 Rh2DG573000
rosa_wichuraiana	Rw2G030580 Rw2G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	701
AccB1I	GGYRCC	1 cut(s)	503
AccB7I	CCANNNNNTGG	2 cut(s)	806, 1003
AciI	CCGC	1 cut(s)	499
AclWI	GGATC	2 cut(s)	630, 953
AcsI	RAATTY	2 cut(s)	66, 471
AfaI	GTAC	1 cut(s)	971
AfiI	CCNNNNNNNGG	3 cut(s)	500, 806, 1003
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	2 cut(s)	382, 904
AjnI	CCWGG	1 cut(s)	706
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	9 cut(s)	155, 163, 208, 242, 287, 533, 601, 610, 952
AluI	AGCT	9 cut(s)	155, 163, 208, 242, 287, 533, 601, 610, 952
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	2 cut(s)	630, 953
ApeKI	GCWGC	3 cut(s)	242, 351, 477
ApoI	RAATTY	2 cut(s)	66, 471
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	4 cut(s)	183, 252, 835, 956
AsuHPI	GGTGA	2 cut(s)	166, 619
AvaII	GGWCC	4 cut(s)	183, 252, 835, 956
AxyI	CCTNAGG	2 cut(s)	459, 618
BaeGI	GKGCMC	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	503
BauI	CACGAG	1 cut(s)	977
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	229, 338, 464
BccI	CCATC	5 cut(s)	535, 570, 751, 800, 1030
BciT130I	CCWGG	1 cut(s)	708
BciVI	GTATCC	1 cut(s)	803
BfaI	CTAG	3 cut(s)	156, 803, 1019
BfuAI	ACCTGC	1 cut(s)	701
BfuI	GTATCC	1 cut(s)	803
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	3 cut(s)	243, 352, 478
BlsI	GCNGC	3 cut(s)	244, 353, 479
BmcAI	AGTACT	1 cut(s)	971
Bme1390I	CCNGG	1 cut(s)	708
Bme18I	GGWCC	4 cut(s)	183, 252, 835, 956
BmgT120I	GGNCC	4 cut(s)	183, 252, 835, 956
BmiI	GGNNCC	4 cut(s)	505, 567, 712, 879
BmrFI	CCNGG	1 cut(s)	708
BmsI	GCATC	3 cut(s)	477, 570, 831
BoxI	GACNNNNGTC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	690
Bpu10I	CCTNAGC	2 cut(s)	540, 606
BsaJI	CCNNGG	3 cut(s)	862, 893, 963
BsaWI	WCCGGW	1 cut(s)	782
Bsc4I	CCNNNNNNNGG	3 cut(s)	500, 806, 1003
Bse21I	CCTNAGG	2 cut(s)	459, 618
Bse3DI	GCAATG	1 cut(s)	668
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	3 cut(s)	862, 893, 963
BseGI	GGATG	4 cut(s)	581, 585, 767, 1033
BseLI	CCNNNNNNNGG	3 cut(s)	500, 806, 1003
BseMI	GCAATG	1 cut(s)	668
BseMII	CTCAG	6 cut(s)	398, 473, 531, 620, 632, 862
BseRI	GAGGAG	1 cut(s)	606
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	3 cut(s)	229, 338, 464
BseYI	CCCAGC	1 cut(s)	588
BsgI	GTGCAG	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	783
BslI	CCNNNNNNNGG	3 cut(s)	500, 806, 1003
BsmI	GAATGC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	19, 506
Bsp143I	GATC	6 cut(s)	25, 403, 622, 853, 945, 1045
Bsp19I	CCATGG	1 cut(s)	893
BspACI	CCGC	1 cut(s)	499
BspCNI	CTCAG	6 cut(s)	399, 472, 532, 619, 631, 861
BspLI	GGNNCC	4 cut(s)	505, 567, 712, 879
BspMI	ACCTGC	1 cut(s)	701
BspPI	GGATC	2 cut(s)	630, 953
BspQI	GCTCTTC	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	668
BssECI	CCNNGG	3 cut(s)	862, 893, 963
BssMI	GATC	6 cut(s)	25, 403, 622, 853, 945, 1045
BssSI	CACGAG	1 cut(s)	977
BssT1I	CCWWGG	3 cut(s)	862, 893, 963
Bst2BI	CACGAG	1 cut(s)	977
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	540
BstC8I	GCNNGC	4 cut(s)	15, 240, 659, 924
BstDEI	CTNAG	6 cut(s)	407, 459, 540, 606, 618, 848
BstDSI	CCRYGG	1 cut(s)	893
BstF5I	GGATG	4 cut(s)	581, 585, 767, 1033
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	6 cut(s)	28, 406, 625, 856, 948, 1048
BstMBI	GATC	6 cut(s)	25, 403, 622, 853, 945, 1045
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 284, 496, 589, 598, 607
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	4 cut(s)	351, 646, 926, 930
BstPAI	GACNNNNGTC	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	3 cut(s)	229, 338, 464
BstX2I	RGATCY	2 cut(s)	25, 622
BstYI	RGATCY	2 cut(s)	25, 622
Bsu36I	CCTNAGG	2 cut(s)	459, 618
BsuI	GTATCC	1 cut(s)	803
BtgI	CCRYGG	1 cut(s)	893
BtsCI	GGATG	4 cut(s)	581, 585, 767, 1033
BtsIMutI	CAGTG	1 cut(s)	856
BveI	ACCTGC	1 cut(s)	701
Cac8I	GCNNGC	4 cut(s)	15, 240, 659, 924
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	4 cut(s)	183, 252, 835, 956
Csp6I	GTAC	1 cut(s)	970
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	6 cut(s)	407, 459, 540, 606, 618, 848
DpnI	GATC	6 cut(s)	27, 405, 624, 855, 947, 1047
DpnII	GATC	6 cut(s)	25, 403, 622, 853, 945, 1045
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	3 cut(s)	862, 893, 963
Eco47I	GGWCC	4 cut(s)	183, 252, 835, 956
Eco81I	CCTNAGG	2 cut(s)	459, 618
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	3 cut(s)	862, 893, 963
EcoT22I	ATGCAT	2 cut(s)	683, 928
ErhI	CCWWGG	3 cut(s)	862, 893, 963
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FauI	CCCGC	1 cut(s)	492
Fnu4HI	GCNGC	3 cut(s)	243, 352, 478
FokI	GGATG	4 cut(s)	588, 592, 774, 1040
Fsp4HI	GCNGC	3 cut(s)	243, 352, 478
FspBI	CTAG	3 cut(s)	156, 803, 1019
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	3 cut(s)	243, 352, 478
GsaI	CCCAGC	1 cut(s)	592
GsuI	CTGGAG	1 cut(s)	690
HapII	CCGG	1 cut(s)	783
HhaI	GCGC	1 cut(s)	698
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HincII	GTYRAC	2 cut(s)	310, 723
HindII	GTYRAC	2 cut(s)	310, 723
HindIII	AAGCTT	1 cut(s)	950
HinfI	GANTC	1 cut(s)	226
HpaI	GTTAAC	1 cut(s)	723
HpaII	CCGG	1 cut(s)	783
HphI	GGTGA	2 cut(s)	166, 619
Hpy166II	GTNNAC	2 cut(s)	310, 723
Hpy188I	TCNGA	4 cut(s)	40, 64, 331, 408
Hpy188III	TCNNGA	7 cut(s)	71, 539, 620, 838, 881, 977, 1049
Hpy8I	GTNNAC	2 cut(s)	310, 723
HpyAV	CCTTC	3 cut(s)	114, 824, 826
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	8 cut(s)	196, 245, 354, 480, 583, 681, 728, 926
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 284, 496, 589, 598, 607
HpyF3I	CTNAG	6 cut(s)	407, 459, 540, 606, 618, 848
HpySE526I	ACGT	1 cut(s)	192
HspAI	GCGC	1 cut(s)	696
KspAI	GTTAAC	1 cut(s)	723
Kzo9I	GATC	6 cut(s)	25, 403, 622, 853, 945, 1045
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	2 cut(s)	86, 152
Lsp1109I	GCAGC	3 cut(s)	229, 338, 464
LweI	GCATC	3 cut(s)	477, 570, 831
MaeI	CTAG	3 cut(s)	156, 803, 1019
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	172, 425, 929
MalI	GATC	6 cut(s)	27, 405, 624, 855, 947, 1047
MboI	GATC	6 cut(s)	25, 403, 622, 853, 945, 1045
MboII	GAAGA	5 cut(s)	293, 344, 515, 527, 798
MflI	RGATCY	2 cut(s)	25, 622
MhlI	GDGCHC	2 cut(s)	19, 506
MluCI	AATT	6 cut(s)	58, 66, 471, 556, 886, 904
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	2 cut(s)	627, 842
MnlI	CCTC	9 cut(s)	108, 402, 468, 563, 579, 615, 627, 912, 973
Mph1103I	ATGCAT	2 cut(s)	683, 928
MseI	TTAA	2 cut(s)	465, 722
MslI	CAYNNNNRTG	9 cut(s)	191, 201, 303, 318, 368, 485, 686, 914, 927
MspA1I	CMGCKG	2 cut(s)	163, 499
MspI	CCGG	1 cut(s)	783
MspR9I	CCNGG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	6 cut(s)	152, 284, 496, 589, 598, 607
NcoI	CCATGG	1 cut(s)	893
NdeII	GATC	6 cut(s)	25, 403, 622, 853, 945, 1045
NlaIV	GGNNCC	4 cut(s)	505, 567, 712, 879
NmuCI	GTSAC	2 cut(s)	172, 929
NsiI	ATGCAT	2 cut(s)	683, 928
NspI	RCATGY	4 cut(s)	351, 646, 926, 930
OliI	CACNNNNGTG	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	926
PciI	ACATGT	1 cut(s)	642
PciSI	GCTCTTC	1 cut(s)	540
PctI	GAATGC	1 cut(s)	245
PflMI	CCANNNNNTGG	2 cut(s)	806, 1003
PkrI	GCNGC	3 cut(s)	244, 353, 479
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PscI	ACATGT	1 cut(s)	642
PshAI	GACNNNNGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	4 cut(s)	505, 567, 712, 879
PspPI	GGNCC	4 cut(s)	183, 252, 835, 956
PsuI	RGATCY	2 cut(s)	25, 622
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
RseI	CAYNNNNRTG	9 cut(s)	191, 201, 303, 318, 368, 485, 686, 914, 927
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	2 cut(s)	465, 722
SatI	GCNGC	3 cut(s)	243, 352, 478
Sau3AI	GATC	6 cut(s)	25, 403, 622, 853, 945, 1045
Sau96I	GGNCC	4 cut(s)	183, 252, 835, 956
ScaI	AGTACT	1 cut(s)	971
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	708
SduI	GDGCHC	2 cut(s)	19, 506
SfaNI	GCATC	3 cut(s)	477, 570, 831
SinI	GGWCC	4 cut(s)	183, 252, 835, 956
SmiMI	CAYNNNNRTG	9 cut(s)	191, 201, 303, 318, 368, 485, 686, 914, 927
SphI	GCATGC	1 cut(s)	926
Sse9I	AATT	6 cut(s)	58, 66, 471, 556, 886, 904
SsiI	CCGC	1 cut(s)	499
SspMI	CTAG	3 cut(s)	156, 803, 1019
StyD4I	CCNGG	1 cut(s)	706
StyI	CCWWGG	3 cut(s)	862, 893, 963
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	1048
TasI	AATT	6 cut(s)	58, 66, 471, 556, 886, 904
TatI	WGTACW	1 cut(s)	969
Tru1I	TTAA	2 cut(s)	465, 722
Tru9I	TTAA	2 cut(s)	465, 722
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	2 cut(s)	172, 929
TseI	GCWGC	3 cut(s)	242, 351, 477
Tsp45I	GTSAC	2 cut(s)	172, 929
TspDTI	ATGAA	6 cut(s)	17, 386, 509, 898, 950, 991
TspRI	CASTG	1 cut(s)	856
Van91I	CCANNNNNTGG	2 cut(s)	806, 1003
VpaK11BI	GGWCC	4 cut(s)	183, 252, 835, 956
XapI	RAATTY	2 cut(s)	66, 471
XceI	RCATGY	4 cut(s)	351, 646, 926, 930
XspI	CTAG	3 cut(s)	156, 803, 1019
ZrmI	AGTACT	1 cut(s)	971
Zsp2I	ATGCAT	2 cut(s)	683, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.