Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276149.1

Orthogroup ID

OG0000798

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 822

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276149.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgcctccggagcatgtgaggaagatcgtgaaagagcacggcgacatgtcgtcgaagaagtaccggcacgacaagcgggtctacctgggagctctgaagttcgttcctcacgccgtgtacaagcttctcgagaatatgccgatgccgtgggagcaggtccgtaatgtgaaggtgctgtaccatattaccggcgcagttaccttcgtcaacgagactccctgggttgtggagccgatctacatggctcaatgggccacaatgtggatcatgatgaggagggagaagcgggatcgccggcatttcaagaggatgaggtttccgccgttcgatgatgaggagcctgtgttggattatgctgataacttgttggatgttgagcctcttgagccgattcagctcgagcttgatgccgaagaggattcggctgtgtatgactggttttatgaccataaacctcttgtgaagactaagctgatcaacggcccgacctaccggaagtggcagctctccctgccgattatggaagccctttaccggctttcaggacaggtaatttccgatttgactgatcggaactatttctatttgtttgataaggagtcgtttctgacagccaaggcattgaatatgtgtataccaggtgggccgaagttcgagccattgtttagggatatggagcaaggggaggaggattggaatgagtttaatgacataaacaagctcattattcggtctccgctgagatcagagtacaaaattgcattccctaatctttacaacaacaggccaaggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000375 GO:0000377 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

265

Amino Acids

31.78

Weight (kDa)

6.68

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80070 AT4G38780
fragaria_vesca	FvH4_6g29610 FvH4_6g43880
malus_domestica	MD00G1072300.v1.1 MD09G1102200.v1.1 MD09G1102300.v1.1 MD09G1102400.v1.1 MD09G1127100.v1.1 MD09G1127300.v1.1 MD17G1212800.v1.1
prunus_persica	Prupe.3G088200_v2.0.a1 Prupe.3G223400_v2.0.a1 Prupe.7G079800_v2.0.a1
pyrus_communis	pycom12419g00050 pycom12419g00060 pycom12419g00070 pycom12419g00080 pycom17g21760 pycom17g21770 pycom17g21780
rosa_chinensis	RchiOBHm_Chr2g0122691 RchiOBHm_Chr2g0135211 RchiOBHm_Chr2g0160631
rosa_laevigata	RLG00000019448 RLG00000021228 RLG00000021230 RLG00000021231 RLG00000028917 RLG00000028918
rosa_multiflora	Rmu_co8242217.1_g000001 Rmu_co8276149.1_g000001 Rmu_sc0000019.1_g000004 Rmu_sc0000674.1_g000029 Rmu_sc0006535.1_g000005 Rmu_sc0011943.1_g000004 Rmu_sc0018128.1_g000001 Rmu_sc0032732.1_g000001 Rmu_sc0040913.1_g000001 Rmu_sc0040914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037020 Rroxscaffold_2G00089540 Rroxscaffold_2G00109400 Rroxscaffold_2G00121310 Rroxscaffold_4G00310000
rosa_rugosa	Rorug01G0172000 Rorug02G0323800 Rorug02G0484400 Rorug02G0484500 Rorug02G0484600
rosa_samantha	Rh1AG188300 Rh1BG154600 Rh1CG174100 Rh1DG068500 Rh2AG309100 Rh2AG371100 Rh2AG549500 Rh2AG549600 Rh2BG307900 Rh2BG380400 Rh2BG563900 Rh2CG286100 Rh2CG359700 Rh2CG534200 Rh2DG397000 Rh2DG572900 Rh2DG573000
rosa_wichuraiana	Rw2G030580 Rw2G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	261
AccI	GTMKAC	2 cut(s)	81, 634
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	4 cut(s)	76, 286, 320, 737
AclWI	GGATC	2 cut(s)	272, 297
AcuI	CTGAAG	1 cut(s)	116
AdeI	CACNNNGTG	2 cut(s)	115, 261
AfaI	GTAC	4 cut(s)	62, 119, 179, 752
AfiI	CCNNNNNNNGG	2 cut(s)	261, 534
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	304, 625
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	3 cut(s)	84, 218, 637
AluBI	AGCT	7 cut(s)	92, 124, 397, 403, 472, 505, 721
AluI	AGCT	7 cut(s)	92, 124, 397, 403, 472, 505, 721
Alw21I	GWGCWC	2 cut(s)	39, 94
Alw26I	GTCTC	2 cut(s)	206, 738
AlwI	GGATC	2 cut(s)	272, 297
Ama87I	CYCGRG	2 cut(s)	128, 398
Aor13HI	TCCGGA	1 cut(s)	7
AoxI	GGCC	4 cut(s)	252, 481, 644, 785
ApeKI	GCWGC	1 cut(s)	502
Asp700I	GAANNNNTTC	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	4 cut(s)	157, 252, 482, 644
AvaI	CYCGRG	2 cut(s)	128, 398
AvaII	GGWCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	94
BarI	GAAGNNNNNNTAC	2 cut(s)	161, 193
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	2 cut(s)	39, 94
BbvI	GCAGC	1 cut(s)	514
BceAI	ACGGC	5 cut(s)	55, 98, 130, 307, 496
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	3 cut(s)	86, 220, 639
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	206, 738
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
Bme1390I	CCNGG	3 cut(s)	86, 220, 639
Bme18I	GGWCC	1 cut(s)	157
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmeT110I	CYCGRG	2 cut(s)	128, 398
BmgT120I	GGNCC	4 cut(s)	157, 252, 482, 644
BmiI	GGNNCC	2 cut(s)	231, 339
BmrFI	CCNGG	3 cut(s)	86, 220, 639
BmsI	GCATC	2 cut(s)	132, 397
BpiI	GAAGAC	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	738
BsaJI	CCNNGG	6 cut(s)	85, 146, 218, 219, 615, 788
BsaWI	WCCGGW	2 cut(s)	7, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 534
Bse118I	RCCGGY	4 cut(s)	63, 188, 294, 534
Bse1I	ACTGG	1 cut(s)	440
BseAI	TCCGGA	1 cut(s)	7
BseBI	CCWGG	3 cut(s)	86, 220, 639
BseDI	CCNNGG	6 cut(s)	85, 146, 218, 219, 615, 788
BseGI	GGATG	2 cut(s)	315, 376
BseLI	CCNNNNNNNGG	2 cut(s)	261, 534
BseMII	CTCAG	1 cut(s)	731
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	3 cut(s)	289, 350, 701
BseXI	GCAGC	1 cut(s)	514
BshFI	GGCC	4 cut(s)	254, 483, 646, 787
BsiHKAI	GWGCWC	2 cut(s)	39, 94
BsiHKCI	CYCGRG	2 cut(s)	128, 398
BsiSI	CCGG	6 cut(s)	8, 64, 189, 295, 493, 535
BslI	CCNNNNNNNGG	2 cut(s)	261, 534
BsmAI	GTCTC	2 cut(s)	206, 738
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	4 cut(s)	254, 483, 646, 787
Bso31I	GGTCTC	1 cut(s)	738
BsoBI	CYCGRG	2 cut(s)	128, 398
Bsp1286I	GDGCHC	2 cut(s)	39, 94
Bsp13I	TCCGGA	1 cut(s)	7
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	7 cut(s)	24, 234, 264, 289, 474, 568, 743
BspACI	CCGC	4 cut(s)	76, 286, 320, 737
BspANI	GGCC	4 cut(s)	254, 483, 646, 787
BspCNI	CTCAG	1 cut(s)	732
BspEI	TCCGGA	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	231, 339
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	272, 297
BspTNI	GGTCTC	1 cut(s)	738
BsrFI	RCCGGY	4 cut(s)	63, 188, 294, 534
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	440
BssAI	RCCGGY	4 cut(s)	63, 188, 294, 534
BssECI	CCNNGG	6 cut(s)	85, 146, 218, 219, 615, 788
BssMI	GATC	7 cut(s)	24, 234, 264, 289, 474, 568, 743
BssNAI	GTATAC	1 cut(s)	635
BssT1I	CCWWGG	2 cut(s)	615, 788
Bst1107I	GTATAC	1 cut(s)	635
Bst2UI	CCWGG	3 cut(s)	86, 220, 639
Bst6I	CTCTTC	1 cut(s)	408
BstAUI	TGTACA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	468, 740
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	315, 376
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	7 cut(s)	27, 237, 267, 292, 477, 571, 746
BstMAI	GTCTC	2 cut(s)	206, 738
BstMBI	GATC	7 cut(s)	24, 234, 264, 289, 474, 568, 743
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 73, 151, 251, 385, 394, 511
BstNI	CCWGG	3 cut(s)	86, 220, 639
BstNSI	RCATGY	2 cut(s)	17, 49
BstSCI	CCNGG	3 cut(s)	84, 218, 637
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	470
BstZ17I	GTATAC	1 cut(s)	635
BsuRI	GGCC	4 cut(s)	254, 483, 646, 787
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	315, 376
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	296
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	4 cut(s)	63, 188, 294, 534
Cfr13I	GGNCC	4 cut(s)	157, 252, 482, 644
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	4 cut(s)	61, 118, 178, 751
CviAII	CATG	4 cut(s)	14, 46, 241, 268
CviQI	GTAC	4 cut(s)	61, 118, 178, 751
DdeI	CTNAG	2 cut(s)	468, 740
DpnI	GATC	7 cut(s)	26, 236, 266, 291, 476, 570, 745
DpnII	GATC	7 cut(s)	24, 234, 264, 289, 474, 568, 743
DraIII	CACNNNGTG	2 cut(s)	115, 261
DrdI	GACNNNNNNGTC	1 cut(s)	77
DriI	GACNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	408
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	408
EciI	GGCGGA	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	615, 788
Eco24I	GRGCYC	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	738
Eco47I	GGWCC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	116
Eco88I	CYCGRG	2 cut(s)	128, 398
EcoICRI	GAGCTC	1 cut(s)	92
EcoRII	CCWGG	3 cut(s)	84, 218, 637
EcoT14I	CCWWGG	2 cut(s)	615, 788
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	2 cut(s)	615, 788
FaeI	CATG	4 cut(s)	17, 49, 244, 271
FatI	CATG	4 cut(s)	13, 45, 240, 267
FauI	CCCGC	2 cut(s)	69, 279
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	2 cut(s)	81, 634
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	2 cut(s)	322, 383
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	503
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	503
HaeIII	GGCC	4 cut(s)	254, 483, 646, 787
HapII	CCGG	6 cut(s)	8, 64, 189, 295, 493, 535
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	17, 49, 244, 271
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	4 cut(s)	214, 391, 419, 599
HpaII	CCGG	6 cut(s)	8, 64, 189, 295, 493, 535
Hpy166II	GTNNAC	4 cut(s)	82, 118, 208, 635
Hpy188I	TCNGA	5 cut(s)	96, 559, 573, 609, 748
Hpy188III	TCNNGA	8 cut(s)	8, 28, 128, 130, 268, 304, 383, 543
Hpy8I	GTNNAC	4 cut(s)	82, 118, 208, 635
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	163, 211
HpyCH4V	TGCA	1 cut(s)	761
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 73, 151, 251, 385, 394, 511
HpyF3I	CTNAG	2 cut(s)	468, 740
Hsp92II	CATG	4 cut(s)	17, 49, 244, 271
HspAI	GCGC	1 cut(s)	192
Kpn2I	TCCGGA	1 cut(s)	7
KroI	GCCGGC	1 cut(s)	294
KroNI	GCCGGC	1 cut(s)	296
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	7 cut(s)	24, 234, 264, 289, 474, 568, 743
LmnI	GCTCC	6 cut(s)	10, 89, 151, 229, 337, 676
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	132, 397
MabI	ACCWGGT	1 cut(s)	637
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	7 cut(s)	26, 236, 266, 291, 476, 570, 745
MboI	GATC	7 cut(s)	24, 234, 264, 289, 474, 568, 743
MboII	GAAGA	4 cut(s)	34, 67, 425, 475
MhlI	GDGCHC	2 cut(s)	39, 94
MluCI	AATT	2 cut(s)	552, 756
MlyI	GAGTC	2 cut(s)	208, 608
MmeI	TCCRAC	2 cut(s)	327, 348
MroI	TCCGGA	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	294
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	739
MspI	CCGG	6 cut(s)	8, 64, 189, 295, 493, 535
MspR9I	CCNGG	3 cut(s)	86, 220, 639
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	3 cut(s)	86, 220, 639
MwoI	GCNNNNNNNGC	7 cut(s)	10, 73, 151, 251, 385, 394, 511
NaeI	GCCGGC	1 cut(s)	296
NdeII	GATC	7 cut(s)	24, 234, 264, 289, 474, 568, 743
NgoMIV	GCCGGC	1 cut(s)	294
NlaIII	CATG	4 cut(s)	17, 49, 244, 271
NlaIV	GGNNCC	2 cut(s)	231, 339
NspI	RCATGY	2 cut(s)	17, 49
PaeR7I	CTCGAG	2 cut(s)	128, 398
PagI	TCATGA	1 cut(s)	267
PasI	CCCWGGG	1 cut(s)	219
PciI	ACATGT	1 cut(s)	45
PctI	GAATGC	1 cut(s)	761
PdiI	GCCGGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	2 cut(s)	391, 419
PflMI	CCANNNNNTGG	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	504
PleI	GAGTC	2 cut(s)	208, 607
PpsI	GAGTC	2 cut(s)	208, 607
PscI	ACATGT	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	3 cut(s)	84, 218, 637
PspGI	CCWGG	3 cut(s)	84, 218, 637
PspN4I	GGNNCC	2 cut(s)	231, 339
PspPI	GGNCC	4 cut(s)	157, 252, 482, 644
PspXI	VCTCGAGB	1 cut(s)	398
RsaI	GTAC	4 cut(s)	62, 119, 179, 752
RsaNI	GTAC	4 cut(s)	61, 118, 178, 751
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	7 cut(s)	24, 234, 264, 289, 474, 568, 743
Sau96I	GGNCC	4 cut(s)	157, 252, 482, 644
SchI	GAGTC	2 cut(s)	208, 608
ScrFI	CCNGG	3 cut(s)	86, 220, 639
SduI	GDGCHC	2 cut(s)	39, 94
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	2 cut(s)	132, 397
Sfr274I	CTCGAG	2 cut(s)	128, 398
SinI	GGWCC	1 cut(s)	157
SlaI	CTCGAG	2 cut(s)	128, 398
SmlI	CTYRAG	3 cut(s)	128, 383, 398
SmoI	CTYRAG	3 cut(s)	128, 383, 398
Sse9I	AATT	2 cut(s)	552, 756
SsiI	CCGC	4 cut(s)	76, 286, 320, 737
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	3 cut(s)	84, 218, 637
StyI	CCWWGG	2 cut(s)	615, 788
TaqI	TCGA	5 cut(s)	53, 129, 327, 399, 654
TaqII	GACCGA	1 cut(s)	720
TasI	AATT	2 cut(s)	552, 756
TatI	WGTACW	2 cut(s)	117, 750
TfiI	GAWTC	2 cut(s)	391, 419
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TseI	GCWGC	1 cut(s)	502
TspGWI	ACGGA	1 cut(s)	149
Van91I	CCANNNNNTGG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	2 cut(s)	17, 49
XhoI	CTCGAG	2 cut(s)	128, 398
XmiI	GTMKAC	2 cut(s)	81, 634
XmnI	GAANNNNTTC	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.