Rh2AG309100

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000798
Physical Location & Seq
Reverse (-)
39311880 .. 39319816
7937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG309100.1

Sequence Viewer

Length: 501 bp
ATGTCATCCTCAGTGGCAGCAGAATCAGCATACCCGGACAACAGAATGCGTTTCAGATTCAAATATGATATTGATTTTGAGAATGATAGTAACAATGTGATAATGAACCTGCTGGAAGATAATGAACCTGCTGGAAGTCAGCTGGACTATAGGAGAAGGGACCTTCTCCTTGCAAATCTTCGATCAGGTGGACCCCCCAGCTTGTCTTTCGTTGGTGGTGGTGGGGGAATTTCACCTGGGAAGTTGAGGACTATGCTACTTGGGGTGGAGAAGAAGAGGAAGGAGCTGGAAGATTTTGAATCTAATTTCAATTTGAGATCTCAAGCTTCTGAATTTGAACGGACTGACTGCTCCAAGGAGCATCTTACATCAGTTCTTAATCTTAAAGATGAGATATCCATTGCTACTGCTGGAGCTGTGGACAGGTATATACATAAACCAATACCAATTGATCCTCCTGACCGTGAAACATTATATGTATGGATGGATGGATGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

166

Amino Acids

18.7

Weight (kDa)

5.01

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 117, 136
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 2 cut(s) 228, 332
AgsI TTSAA 4 cut(s) 61, 299, 310, 338
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 5 cut(s) 142, 201, 286, 326, 416
AluI AGCT 5 cut(s) 142, 201, 286, 326, 416
AlwI GGATC 1 cut(s) 446
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 228, 332
AspS9I GGNCC 2 cut(s) 160, 191
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 225
AvaII GGWCC 2 cut(s) 160, 191
BbvI GCAGC 1 cut(s) 29
BccI CCATC 3 cut(s) 478, 482, 486
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 148
BfuAI ACCTGC 2 cut(s) 117, 136
BglII AGATCT 1 cut(s) 317
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 2 cut(s) 35, 237
Bme18I GGWCC 2 cut(s) 160, 191
BmgT120I GGNCC 2 cut(s) 160, 191
BmiI GGNNCC 2 cut(s) 161, 193
BmrFI CCNGG 2 cut(s) 35, 237
BmsI GCATC 1 cut(s) 370
BpmI CTGGAG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 236, 354
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 236, 354
BseGI GGATG 4 cut(s) 5, 489, 493, 497
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 51
Bsp143I GATC 3 cut(s) 182, 317, 451
BspCNI CTCAG 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 161, 193
BspMI ACCTGC 2 cut(s) 117, 136
BspPI GGATC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 399
BssECI CCNNGG 2 cut(s) 236, 354
BssMI GATC 3 cut(s) 182, 317, 451
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 4 cut(s) 5, 489, 493, 497
BstKTI GATC 3 cut(s) 185, 320, 454
BstMBI GATC 3 cut(s) 182, 317, 451
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 33, 235
BstSFI CTRYAG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BtsCI GGATG 4 cut(s) 5, 489, 493, 497
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 2 cut(s) 117, 136
Cfr13I GGNCC 2 cut(s) 160, 191
CviJI RGCY 6 cut(s) 142, 201, 286, 326, 416, 497
CviKI_1 RGCY 6 cut(s) 142, 201, 286, 326, 416, 497
DdeI CTNAG 1 cut(s) 10
DpnI GATC 3 cut(s) 184, 319, 453
DpnII GATC 3 cut(s) 182, 317, 451
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 354
Eco32I GATATC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 160, 191
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 235
EcoRV GATATC 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaqI GGGAC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 496
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 432
HapII CCGG 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 3 cut(s) 23, 57, 299
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 2 cut(s) 191, 421
Hpy188I TCNGA 2 cut(s) 56, 331
Hpy188III TCNNGA 1 cut(s) 458
Hpy8I GTNNAC 2 cut(s) 191, 421
HpyAV CCTTC 3 cut(s) 150, 173, 274
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 10
Kzo9I GATC 3 cut(s) 182, 317, 451
LmnI GCTCC 4 cut(s) 283, 356, 358, 413
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 89
MalI GATC 3 cut(s) 184, 319, 453
MboI GATC 3 cut(s) 182, 317, 451
MboII GAAGA 5 cut(s) 128, 170, 283, 286, 302
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 1 cut(s) 317
MluCI AATT 5 cut(s) 228, 304, 310, 332, 447
MnlI CCTC 4 cut(s) 19, 240, 270, 465
MseI TTAA 3 cut(s) 378, 384, 499
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 35, 237
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 51
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 1 cut(s) 35
NdeII GATC 3 cut(s) 182, 317, 451
NlaIV GGNNCC 2 cut(s) 161, 193
PctI GAATGC 1 cut(s) 51
PfeI GAWTC 3 cut(s) 23, 57, 299
PkrI GCNGC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 161, 193
PspPI GGNCC 2 cut(s) 160, 191
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 142
SaqAI TTAA 3 cut(s) 378, 384, 499
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 3 cut(s) 182, 317, 451
Sau96I GGNCC 2 cut(s) 160, 191
ScrFI CCNGG 2 cut(s) 35, 237
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 148
SinI GGWCC 2 cut(s) 160, 191
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
Sse9I AATT 5 cut(s) 228, 304, 310, 332, 447
StyD4I CCNGG 2 cut(s) 33, 235
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 464
TaqI TCGA 1 cut(s) 181
TasI AATT 5 cut(s) 228, 304, 310, 332, 447
TfiI GAWTC 3 cut(s) 23, 57, 299
Tru1I TTAA 3 cut(s) 378, 384, 499
Tru9I TTAA 3 cut(s) 378, 384, 499
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 119, 138
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 2 cut(s) 160, 191
XapI RAATTY 2 cut(s) 228, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.