Rmu_sc0000019.1_g000004

pre-mRNA-processing-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000019.1
OG0000798
Physical Location & Seq
Forward (+)
23134 .. 23661
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000019.1_g000004.1.cds

Sequence Viewer

Length: 528 bp
atgttcaatccgaacacggggaagctgttcttgaagatcaacatctacactgcgaacataacactagtggtagcagcagctttgcgttcattaccagttggagaacatccaaagaaaatatttctggacgtgagtaggggaatgcttgatcaggattttcctcatatagtcatggaaggaagtgagctcaagcttcccttccaggcttgccttaagattgagaagtttattgatcagatgaaattgaaggctaataacactgatcagccacaggaggttaatcttttcagcttcaacatctatgataattggttgaagagaattgtatcctacactgcgttcaaccggattgttctgattcttcgtgcgcttgatgtgaacaatgagaaggcaaaggagttattaatgccagctgtcccaaaagctaagccagaccacatttggccctctctttctgaggcacagtggatagaggttgaggtttctctaaggaatctcattctcaacgactatgcaattaagaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

175

Amino Acids

20.09

Weight (kDa)

8.61

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 17
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 6 cut(s) 7, 34, 247, 295, 316, 343
AhlI ACTAGT 1 cut(s) 64
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 7 cut(s) 25, 80, 187, 193, 291, 413, 425
AluI AGCT 7 cut(s) 25, 80, 187, 193, 291, 413, 425
Alw21I GWGCWC 1 cut(s) 189
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 2 cut(s) 74, 77
AseI ATTAAT 1 cut(s) 404
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 444
BanII GRGCYC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 86, 89
BciT130I CCWGG 1 cut(s) 203
BciVI GTATCC 1 cut(s) 337
BclI TGATCA 3 cut(s) 148, 232, 262
BcuI ACTAGT 1 cut(s) 64
BfaI CTAG 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 212
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 2 cut(s) 75, 78
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 2 cut(s) 76, 79
Bme1390I CCNGG 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 203
Bpu1102I GCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 41
BseBI CCWGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 86, 89
BshFI GGCC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 346
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 4 cut(s) 36, 148, 232, 262
Bsp1720I GCTNAGC 1 cut(s) 426
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 1 cut(s) 448
BspTI CTTAAG 1 cut(s) 212
BsrI ACTGG 1 cut(s) 95
BssMI GATC 4 cut(s) 36, 148, 232, 262
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 465
Bst6I CTCTTC 1 cut(s) 311
BstAFI CTTAAG 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 208, 411
BstDEI CTNAG 3 cut(s) 426, 456, 488
BstF5I GGATG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 4 cut(s) 39, 151, 235, 265
BstMBI GATC 4 cut(s) 36, 148, 232, 262
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 86, 89
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 1 cut(s) 445
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 2 cut(s) 48, 333
BtsIMutI CAGTG 4 cut(s) 48, 258, 333, 470
Cac8I GCNNGC 2 cut(s) 208, 411
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 444
CviAII CATG 1 cut(s) 172
DdeI CTNAG 3 cut(s) 426, 456, 488
DpnI GATC 4 cut(s) 38, 150, 234, 264
DpnII GATC 4 cut(s) 36, 148, 232, 262
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Ecl136II GAGCTC 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 189
FaeI CATG 1 cut(s) 175
FaiI YATR 6 cut(s) 59, 165, 167, 173, 303, 513
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 182, 214
FaqI GGGAC 1 cut(s) 401
FatI CATG 1 cut(s) 171
FbaI TGATCA 3 cut(s) 148, 232, 262
Fnu4HI GCNGC 2 cut(s) 75, 78
FokI GGATG 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 75, 78
FspBI CTAG 1 cut(s) 65
GlaI GCGC 1 cut(s) 369
GluI GCNGC 2 cut(s) 75, 78
HaeIII GGCC 1 cut(s) 445
HapII CCGG 1 cut(s) 346
HhaI GCGC 1 cut(s) 370
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 2 cut(s) 358, 493
HpaII CCGG 1 cut(s) 346
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 4 cut(s) 12, 237, 357, 457
Hpy188III TCNNGA 3 cut(s) 31, 125, 152
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 4 cut(s) 170, 208, 241, 382
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 515
HpyF3I CTNAG 3 cut(s) 426, 456, 488
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 1 cut(s) 368
Ksp22I TGATCA 3 cut(s) 148, 232, 262
Kzo9I GATC 4 cut(s) 36, 148, 232, 262
LpnPI CCDG 9 cut(s) 108, 110, 137, 188, 215, 257, 359, 423, 444
Lsp1109I GCAGC 2 cut(s) 86, 89
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 129
MalI GATC 4 cut(s) 38, 150, 234, 264
MboI GATC 4 cut(s) 36, 148, 232, 262
MboII GAAGA 3 cut(s) 46, 328, 353
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 4 cut(s) 242, 307, 321, 516
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 6 cut(s) 171, 268, 451, 457, 466, 472
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 4 cut(s) 213, 279, 404, 519
MspA1I CMGCKG 1 cut(s) 413
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 147
MvaI CCWGG 1 cut(s) 203
NdeII GATC 4 cut(s) 36, 148, 232, 262
NlaIII CATG 1 cut(s) 175
PctI GAATGC 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 358, 493
PkrI GCNGC 2 cut(s) 76, 79
PshBI ATTAAT 1 cut(s) 404
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspPI GGNCC 1 cut(s) 444
PvuII CAGCTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 4 cut(s) 213, 279, 404, 519
SatI GCNGC 2 cut(s) 75, 78
Sau3AI GATC 4 cut(s) 36, 148, 232, 262
Sau96I GGNCC 1 cut(s) 444
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 188, 212
SmoI CTYRAG 2 cut(s) 188, 212
SpeI ACTAGT 1 cut(s) 64
Sse9I AATT 4 cut(s) 242, 307, 321, 516
SspI AATATT 1 cut(s) 120
SspMI CTAG 1 cut(s) 65
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 465
TaiI ACGT 1 cut(s) 132
TasI AATT 4 cut(s) 242, 307, 321, 516
TfiI GAWTC 2 cut(s) 358, 493
Tru1I TTAA 4 cut(s) 213, 279, 404, 519
Tru9I TTAA 4 cut(s) 213, 279, 404, 519
TscAI CASTG 4 cut(s) 55, 265, 340, 470
TseI GCWGC 2 cut(s) 74, 77
TspDTI ATGAA 2 cut(s) 78, 254
TspRI CASTG 4 cut(s) 55, 265, 340, 470
Vha464I CTTAAG 1 cut(s) 212
VspI ATTAAT 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.