Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040914.1

Orthogroup ID

OG0000798

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 692

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040914.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 692 bp

aactgattggcgtgtgagagcaatatcagctacaaatctacatcttcgtgtcaaccatatttatgtgagttcagaagatacaaaggaaacaggctacacttacatcatgccaatgaacattttgaaaaaatttatctgtgttgctgatctgaggacacaagttgctggttacttgtatggtataagcccacctgacaaccctcagattaaggaaatttgctgcattgtgatgccaccacagcggggcacccaccagcaagttcatcttccatcagctcttcctgagcatgatttcctcaattatttggaacctctgggatggatgcacacccagccaaatgagctacctcagctttctcctcaggatctcaccactcatgctaacatgttggagaatggcaagcaatgggatagggagaaatgcattattatgacctgcgcttttactccaggttcctgctcgttaactgcgtataaacttactccttctggttatgagtggggatgttgttctaacaagaacagcagaagaaacaataatccactagatggataccttccaactcattatgagaaggtccagatgcttctcagtgatcgcttccttggtgtctacatggttcctgataattgtccatggaacttcaatttcatgggagtgaggcatgcatgtgacatgaagtatggcatca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000375 GO:0000377 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

230

Amino Acids

26.39

Weight (kDa)

6.71

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80070 AT4G38780
fragaria_vesca	FvH4_6g29610 FvH4_6g43880
malus_domestica	MD00G1072300.v1.1 MD09G1102200.v1.1 MD09G1102300.v1.1 MD09G1102400.v1.1 MD09G1127100.v1.1 MD09G1127300.v1.1 MD17G1212800.v1.1
prunus_persica	Prupe.3G088200_v2.0.a1 Prupe.3G223400_v2.0.a1 Prupe.7G079800_v2.0.a1
pyrus_communis	pycom12419g00050 pycom12419g00060 pycom12419g00070 pycom12419g00080 pycom17g21760 pycom17g21770 pycom17g21780
rosa_chinensis	RchiOBHm_Chr2g0122691 RchiOBHm_Chr2g0135211 RchiOBHm_Chr2g0160631
rosa_laevigata	RLG00000019448 RLG00000021228 RLG00000021230 RLG00000021231 RLG00000028917 RLG00000028918
rosa_multiflora	Rmu_co8242217.1_g000001 Rmu_co8276149.1_g000001 Rmu_sc0000019.1_g000004 Rmu_sc0000674.1_g000029 Rmu_sc0006535.1_g000005 Rmu_sc0011943.1_g000004 Rmu_sc0018128.1_g000001 Rmu_sc0032732.1_g000001 Rmu_sc0040913.1_g000001 Rmu_sc0040914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037020 Rroxscaffold_2G00089540 Rroxscaffold_2G00109400 Rroxscaffold_2G00121310 Rroxscaffold_4G00310000
rosa_rugosa	Rorug01G0172000 Rorug02G0323800 Rorug02G0484400 Rorug02G0484500 Rorug02G0484600
rosa_samantha	Rh1AG188300 Rh1BG154600 Rh1CG174100 Rh1DG068500 Rh2AG309100 Rh2AG371100 Rh2AG549500 Rh2AG549600 Rh2BG307900 Rh2BG380400 Rh2BG563900 Rh2CG286100 Rh2CG359700 Rh2CG534200 Rh2DG397000 Rh2DG572900 Rh2DG573000
rosa_wichuraiana	Rw2G030580 Rw2G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	613
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	129, 214
AfiI	CCNNNNNNNGG	2 cut(s)	243, 549
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	125, 647
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	4 cut(s)	30, 276, 344, 353
AluI	AGCT	4 cut(s)	30, 276, 344, 353
AlwI	GGATC	1 cut(s)	373
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	129, 214
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	578
AxyI	CCTNAGG	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	3 cut(s)	278, 313, 543
BciT130I	CCWGG	1 cut(s)	451
BciVI	GTATCC	1 cut(s)	546
BfaI	CTAG	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	546
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	4 cut(s)	248, 310, 455, 622
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	3 cut(s)	220, 313, 574
BpmI	CTGGAG	1 cut(s)	433
Bpu10I	CCTNAGC	2 cut(s)	283, 349
BsaJI	CCNNGG	2 cut(s)	605, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 549
Bse21I	CCTNAGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	2 cut(s)	605, 636
BseGI	GGATG	3 cut(s)	324, 328, 510
BseLI	CCNNNNNNNGG	2 cut(s)	243, 549
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	6 cut(s)	141, 216, 274, 363, 375, 605
BseRI	GAGGAG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	243, 549
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	146, 365, 596
Bsp19I	CCATGG	1 cut(s)	636
BspACI	CCGC	1 cut(s)	242
BspCNI	CTCAG	6 cut(s)	142, 215, 275, 362, 374, 604
BspLI	GGNNCC	4 cut(s)	248, 310, 455, 622
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	373
BspQI	GCTCTTC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	411
BssECI	CCNNGG	2 cut(s)	605, 636
BssMI	GATC	3 cut(s)	146, 365, 596
BssT1I	CCWWGG	2 cut(s)	605, 636
Bst2UI	CCWGG	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	402, 667
BstDEI	CTNAG	6 cut(s)	150, 202, 283, 349, 361, 591
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	3 cut(s)	324, 328, 510
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	3 cut(s)	149, 368, 599
BstMBI	GATC	3 cut(s)	146, 365, 596
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 239, 332, 341, 350
BstNI	CCWGG	1 cut(s)	451
BstNSI	RCATGY	3 cut(s)	389, 669, 673
BstSCI	CCNGG	1 cut(s)	449
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
Bsu36I	CCTNAGG	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	3 cut(s)	324, 328, 510
BtsIMutI	CAGTG	1 cut(s)	599
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	402, 667
CfoI	GCGC	1 cut(s)	441
Cfr13I	GGNCC	1 cut(s)	578
CviJI	RGCY	7 cut(s)	30, 94, 187, 276, 335, 344, 353
CviKI_1	RGCY	7 cut(s)	30, 94, 187, 276, 335, 344, 353
DdeI	CTNAG	6 cut(s)	150, 202, 283, 349, 361, 591
DpnI	GATC	3 cut(s)	148, 367, 598
DpnII	GATC	3 cut(s)	146, 365, 596
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	605, 636
Eco47I	GGWCC	1 cut(s)	578
Eco81I	CCTNAGG	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	605, 636
EcoT22I	ATGCAT	2 cut(s)	426, 671
ErhI	CCWWGG	2 cut(s)	605, 636
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FauI	CCCGC	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	3 cut(s)	331, 335, 517
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	1 cut(s)	221
GsaI	CCCAGC	1 cut(s)	335
GsuI	CTGGAG	1 cut(s)	433
HhaI	GCGC	1 cut(s)	441
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HincII	GTYRAC	2 cut(s)	53, 466
HindII	GTYRAC	2 cut(s)	53, 466
HpaI	GTTAAC	1 cut(s)	466
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	3 cut(s)	53, 466, 614
Hpy188I	TCNGA	3 cut(s)	74, 151, 205
Hpy188III	TCNNGA	4 cut(s)	282, 363, 581, 624
Hpy8I	GTNNAC	3 cut(s)	53, 466, 614
HpyAV	CCTTC	3 cut(s)	496, 567, 569
HpyCH4V	TGCA	4 cut(s)	223, 326, 424, 669
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 239, 332, 341, 350
HpyF3I	CTNAG	6 cut(s)	150, 202, 283, 349, 361, 591
HspAI	GCGC	1 cut(s)	439
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	146, 365, 596
LguI	GCTCTTC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	3 cut(s)	220, 313, 574
MaeI	CTAG	1 cut(s)	546
MaeIII	GTNAC	2 cut(s)	168, 672
MalI	GATC	3 cut(s)	148, 367, 598
MboI	GATC	3 cut(s)	146, 365, 596
MboII	GAAGA	5 cut(s)	36, 87, 258, 270, 541
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	5 cut(s)	129, 214, 299, 629, 647
MmeI	TCCRAC	2 cut(s)	370, 585
MnlI	CCTC	7 cut(s)	145, 211, 306, 322, 358, 370, 655
Mph1103I	ATGCAT	2 cut(s)	426, 671
MseI	TTAA	2 cut(s)	208, 465
MslI	CAYNNNNRTG	7 cut(s)	46, 61, 111, 228, 429, 657, 670
MspA1I	CMGCKG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	451
MwoI	GCNNNNNNNGC	5 cut(s)	27, 239, 332, 341, 350
NcoI	CCATGG	1 cut(s)	636
NdeII	GATC	3 cut(s)	146, 365, 596
NlaIV	GGNNCC	4 cut(s)	248, 310, 455, 622
NmuCI	GTSAC	1 cut(s)	672
NsiI	ATGCAT	2 cut(s)	426, 671
NspI	RCATGY	3 cut(s)	389, 669, 673
PaeI	GCATGC	1 cut(s)	669
PciI	ACATGT	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PflMI	CCANNNNNTGG	1 cut(s)	549
PkrI	GCNGC	1 cut(s)	222
PscI	ACATGT	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	4 cut(s)	248, 310, 455, 622
PspPI	GGNCC	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	365
RseI	CAYNNNNRTG	7 cut(s)	46, 61, 111, 228, 429, 657, 670
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	208, 465
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	3 cut(s)	146, 365, 596
Sau96I	GGNCC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	3 cut(s)	220, 313, 574
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	7 cut(s)	46, 61, 111, 228, 429, 657, 670
SphI	GCATGC	1 cut(s)	669
Sse9I	AATT	5 cut(s)	129, 214, 299, 629, 647
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	449
StyI	CCWWGG	2 cut(s)	605, 636
TasI	AATT	5 cut(s)	129, 214, 299, 629, 647
Tru1I	TTAA	2 cut(s)	208, 465
Tru9I	TTAA	2 cut(s)	208, 465
TscAI	CASTG	1 cut(s)	599
TseFI	GTSAC	1 cut(s)	672
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	3 cut(s)	129, 252, 641
TspRI	CASTG	1 cut(s)	599
Van91I	CCANNNNNTGG	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	2 cut(s)	129, 214
XceI	RCATGY	3 cut(s)	389, 669, 673
XmiI	GTMKAC	1 cut(s)	613
XspI	CTAG	1 cut(s)	546
Zsp2I	ATGCAT	2 cut(s)	426, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.