Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000798

Physical Location & Seq

Genomic Coordinates Reverse (-)

31873969 .. 31878719

Gene Structure 4751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCCCCTGATACTAATCATGACTGTTTGGTTGGTGGTGGTGGGGGAATTTCACCTGGGAAGTTGAGGACTATGCTACTTGGGGTGGAGAAGAAGAGGAAGGAGCTGGAAGATTTTGAATCTACTTTCAATTTGAGATCTCAAGCTTCTGAATTTGAACAGACTGACTGCTCCAAGGAGCATCTTACATCAGTTCTTAATCTTAAAGATGAGGTATCCATTGCTACTGCTGGAGCTGTGGACAGTCGTGCTATTTTCGCATTCAATCCATGCACCGAGCAGCTGCTCTTGAAGACCAATATCCATGCTGCTAACACAAGACAAGAGGTAGCTGCGCTTTTGCGTTCAGTTCCAGTTGGGGAACATCCAAAGAGAATCTTTGTGAACATGTGTAAGGGAATGCATGATCATCCACCGAAGGGTTTCCCTACCATAGTCATGAAAGGAAGTGAGCTCAAGCTTCCTTTGCAGGCTTGCCTTAAGATTGAGGAATTCATTAATTTGATCAAATTAAAGGCTAATAGTACTGGTCAGCCACAGGAGGTTAATCTCTTCAGTTTCAACATCTATGATGATTGGTTAAAGAGAATTAAAACCAGAATTGTATCCTACACTGCTTTCAACCGGATCGTTCTGATCCTTCGCGCATTTGATGTGAACATTAAGGAGGCAAAGATGTTATTAGAGTTGGATGGCATAAAAACTGAACCGGAACACTTCTGGCCTTCTTTTTCTGAGGTTCAATGGGTGAAGGTTGAGGTTGCTCTGAAGAATCTCATTCTCTTAGACTATGCAAAAAATAACGAAAATGTGGATACGGCGGCTCTCGAGAAAGACATATATCAGAAAGTAGAAAGATTCATATATAATATATTTACATACACGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000375 GO:0000377 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

296

Amino Acids

33.59

Weight (kDa)

7.05

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP8_domainIV	PF12134	100 - 261	8.9e-40	PRP8 domain IV core

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80070 AT4G38780
fragaria_vesca	FvH4_6g29610 FvH4_6g43880
malus_domestica	MD00G1072300.v1.1 MD09G1102200.v1.1 MD09G1102300.v1.1 MD09G1102400.v1.1 MD09G1127100.v1.1 MD09G1127300.v1.1 MD17G1212800.v1.1
prunus_persica	Prupe.3G088200_v2.0.a1 Prupe.3G223400_v2.0.a1 Prupe.7G079800_v2.0.a1
pyrus_communis	pycom12419g00050 pycom12419g00060 pycom12419g00070 pycom12419g00080 pycom17g21760 pycom17g21770 pycom17g21780
rosa_chinensis	RchiOBHm_Chr2g0122691 RchiOBHm_Chr2g0135211 RchiOBHm_Chr2g0160631
rosa_laevigata	RLG00000019448 RLG00000021228 RLG00000021230 RLG00000021231 RLG00000028917 RLG00000028918
rosa_multiflora	Rmu_co8242217.1_g000001 Rmu_co8276149.1_g000001 Rmu_sc0000019.1_g000004 Rmu_sc0000674.1_g000029 Rmu_sc0006535.1_g000005 Rmu_sc0011943.1_g000004 Rmu_sc0018128.1_g000001 Rmu_sc0032732.1_g000001 Rmu_sc0040913.1_g000001 Rmu_sc0040914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037020 Rroxscaffold_2G00089540 Rroxscaffold_2G00109400 Rroxscaffold_2G00121310 Rroxscaffold_4G00310000
rosa_rugosa	Rorug01G0172000 Rorug02G0323800 Rorug02G0484400 Rorug02G0484500 Rorug02G0484600
rosa_samantha	Rh1AG188300 Rh1BG154600 Rh1CG174100 Rh1DG068500 Rh2AG309100 Rh2AG371100 Rh2AG549500 Rh2AG549600 Rh2BG307900 Rh2BG380400 Rh2BG563900 Rh2CG286100 Rh2CG359700 Rh2CG534200 Rh2DG397000 Rh2DG572900 Rh2DG573000
rosa_wichuraiana	Rw2G030580 Rw2G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	645
AciI	CCGC	1 cut(s)	821
AclWI	GGATC	2 cut(s)	631, 635
AcsI	RAATTY	3 cut(s)	48, 152, 491
AcuI	CTGAAG	2 cut(s)	538, 788
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflII	CTTAAG	1 cut(s)	479
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	8 cut(s)	119, 130, 158, 265, 292, 562, 622, 743
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	7 cut(s)	106, 146, 236, 283, 332, 454, 460
AluI	AGCT	7 cut(s)	106, 146, 236, 283, 332, 454, 460
Alw21I	GWGCWC	1 cut(s)	456
AlwI	GGATC	2 cut(s)	631, 635
Ama87I	CYCGRG	1 cut(s)	827
AoxI	GGCC	1 cut(s)	722
ApeKI	GCWGC	4 cut(s)	280, 283, 308, 332
ApoI	RAATTY	3 cut(s)	48, 152, 491
AseI	ATTAAT	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	2 cut(s)	337, 647
AsuHPI	GGTGA	2 cut(s)	45, 760
AvaI	CYCGRG	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	270, 292, 295, 319
BccI	CCATC	1 cut(s)	686
BceAI	ACGGC	1 cut(s)	834
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	3 cut(s)	226, 616, 808
BclI	TGATCA	2 cut(s)	406, 504
BfrI	CTTAAG	1 cut(s)	479
BfuI	GTATCC	3 cut(s)	226, 616, 808
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	5 cut(s)	281, 284, 309, 333, 822
BlsI	GCNGC	5 cut(s)	282, 285, 310, 334, 823
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	827
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	126, 440
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	56, 174
BsaWI	WCCGGW	2 cut(s)	624, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	353, 532
Bse3DI	GCAATG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	56, 174
BseGI	GGATG	3 cut(s)	364, 409, 697
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	2 cut(s)	353, 532
BseXI	GCAGC	4 cut(s)	270, 292, 295, 319
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	724
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	2 cut(s)	625, 710
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmI	GAATGC	2 cut(s)	260, 405
BsnI	GGCC	1 cut(s)	724
BsoBI	CYCGRG	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	5 cut(s)	137, 406, 504, 627, 636
BspACI	CCGC	1 cut(s)	821
BspANI	GGCC	1 cut(s)	724
BspCNI	CTCAG	1 cut(s)	727
BspFNI	CGCG	1 cut(s)	645
BspHI	TCATGA	2 cut(s)	19, 438
BspPI	GGATC	2 cut(s)	631, 635
BspTI	CTTAAG	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	353, 532
BssECI	CCNNGG	2 cut(s)	56, 174
BssMI	GATC	5 cut(s)	137, 406, 504, 627, 636
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	26, 245
Bst6I	CTCTTC	2 cut(s)	89, 557
BstAFI	CTTAAG	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	471, 475
BstDEI	CTNAG	2 cut(s)	735, 784
BstF5I	GGATG	3 cut(s)	364, 409, 697
BstFNI	CGCG	1 cut(s)	645
BstHHI	GCGC	2 cut(s)	337, 647
BstKTI	GATC	5 cut(s)	140, 409, 507, 630, 639
BstMBI	GATC	5 cut(s)	137, 406, 504, 627, 636
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 466
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	55
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	4 cut(s)	270, 292, 295, 319
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuI	GTATCC	3 cut(s)	226, 616, 808
BsuRI	GGCC	1 cut(s)	724
BtsCI	GGATG	3 cut(s)	364, 409, 697
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	2 cut(s)	471, 475
CciI	TCATGA	2 cut(s)	19, 438
CfoI	GCGC	2 cut(s)	337, 647
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	6 cut(s)	20, 270, 305, 388, 404, 439
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	2 cut(s)	735, 784
DpnI	GATC	5 cut(s)	139, 408, 506, 629, 638
DpnII	GATC	5 cut(s)	137, 406, 504, 627, 636
Eam1104I	CTCTTC	2 cut(s)	89, 557
EarI	CTCTTC	2 cut(s)	89, 557
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	538, 788
Eco88I	CYCGRG	1 cut(s)	827
EcoICRI	GAGCTC	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	6 cut(s)	23, 273, 308, 391, 407, 442
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	6 cut(s)	19, 269, 304, 387, 403, 438
FbaI	TGATCA	2 cut(s)	406, 504
Fnu4HI	GCNGC	5 cut(s)	281, 284, 309, 333, 822
FokI	GGATG	3 cut(s)	351, 396, 704
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	5 cut(s)	281, 284, 309, 333, 822
GlaI	GCGC	2 cut(s)	336, 646
GluI	GCNGC	5 cut(s)	281, 284, 309, 333, 822
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	724
HapII	CCGG	2 cut(s)	625, 710
HhaI	GCGC	2 cut(s)	337, 647
Hin1II	CATG	6 cut(s)	23, 273, 308, 391, 407, 442
Hin6I	GCGC	2 cut(s)	335, 645
HinP1I	GCGC	2 cut(s)	335, 645
HindIII	AAGCTT	2 cut(s)	144, 458
HinfI	GANTC	4 cut(s)	119, 375, 772, 858
HpaII	CCGG	2 cut(s)	625, 710
HphI	GGTGA	2 cut(s)	45, 760
Hpy166II	GTNNAC	3 cut(s)	241, 385, 658
Hpy188I	TCNGA	5 cut(s)	151, 636, 736, 768, 846
Hpy188III	TCNNGA	5 cut(s)	20, 289, 439, 827, 829
Hpy8I	GTNNAC	3 cut(s)	241, 385, 658
HpyAV	CCTTC	5 cut(s)	94, 412, 650, 735, 745
HpyCH4III	ACNGT	2 cut(s)	26, 245
HpyCH4V	TGCA	4 cut(s)	273, 403, 469, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 466
HpyF3I	CTNAG	2 cut(s)	735, 784
Hsp92II	CATG	6 cut(s)	23, 273, 308, 391, 407, 442
HspAI	GCGC	2 cut(s)	335, 645
Ksp22I	TGATCA	2 cut(s)	406, 504
Kzo9I	GATC	5 cut(s)	137, 406, 504, 627, 636
LmnI	GCTCC	4 cut(s)	103, 176, 178, 233
Lsp1109I	GCAGC	4 cut(s)	270, 292, 295, 319
LweI	GCATC	1 cut(s)	190
MalI	GATC	5 cut(s)	139, 408, 506, 629, 638
MboI	GATC	5 cut(s)	137, 406, 504, 627, 636
MboII	GAAGA	6 cut(s)	103, 106, 122, 304, 544, 781
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	8 cut(s)	48, 130, 152, 491, 499, 509, 588, 600
MmeI	TCCRAC	1 cut(s)	669
MnlI	CCTC	9 cut(s)	60, 90, 205, 319, 481, 535, 661, 730, 751
Mph1103I	ATGCAT	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	9 cut(s)	198, 204, 480, 498, 512, 546, 581, 591, 663
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	283
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	2 cut(s)	625, 710
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	2 cut(s)	260, 405
MvaI	CCWGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	2 cut(s)	257, 466
NdeII	GATC	5 cut(s)	137, 406, 504, 627, 636
NlaIII	CATG	6 cut(s)	23, 273, 308, 391, 407, 442
NsiI	ATGCAT	1 cut(s)	405
NspI	RCATGY	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	827
PagI	TCATGA	2 cut(s)	19, 438
PciI	ACATGT	1 cut(s)	387
PctI	GAATGC	2 cut(s)	260, 405
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	4 cut(s)	119, 375, 772, 858
PkrI	GCNGC	5 cut(s)	282, 285, 310, 334, 823
PscI	ACATGT	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	498
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	9 cut(s)	198, 204, 480, 498, 512, 546, 581, 591, 663
SatI	GCNGC	5 cut(s)	281, 284, 309, 333, 822
Sau3AI	GATC	5 cut(s)	137, 406, 504, 627, 636
ScaI	AGTACT	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	190
Sfr274I	CTCGAG	1 cut(s)	827
SlaI	CTCGAG	1 cut(s)	827
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	4 cut(s)	141, 455, 479, 827
SmoI	CTYRAG	4 cut(s)	141, 455, 479, 827
Sse9I	AATT	8 cut(s)	48, 130, 152, 491, 499, 509, 588, 600
SsiI	CCGC	1 cut(s)	821
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	26, 245
TaqI	TCGA	1 cut(s)	828
TasI	AATT	8 cut(s)	48, 130, 152, 491, 499, 509, 588, 600
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	824
TfiI	GAWTC	4 cut(s)	119, 375, 772, 858
Tru1I	TTAA	9 cut(s)	198, 204, 480, 498, 512, 546, 581, 591, 663
Tru9I	TTAA	9 cut(s)	198, 204, 480, 498, 512, 546, 581, 591, 663
TscAI	CASTG	1 cut(s)	619
TseI	GCWGC	4 cut(s)	280, 283, 308, 332
TspDTI	ATGAA	3 cut(s)	455, 484, 850
TspRI	CASTG	1 cut(s)	619
Vha464I	CTTAAG	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	3 cut(s)	48, 152, 491
XceI	RCATGY	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	827
XmnI	GAANNNNTTC	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.