Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000798

Physical Location & Seq

Genomic Coordinates Forward (+)

9808509 .. 9808709

Gene Structure 201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1127100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAATCGAGAAGCATTTAGCAGCACAAAAGAATTGCAGAATAAGAAGACAAAGAAGAGGCCTGCCGTTGCTTTCTTACGAGTTGATGATGGACACATGAAGGTGTTTGAGAATCGTGTGAGGCAGATCCTTATGTCCCCAGGGTCCACAATATTCACAAAAATTGTCAACAAATGGAAAAGGCCCTTATCGGTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000375 GO:0000377 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

67

Amino Acids

7.7

Weight (kDa)

11.1

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U5_2-snRNA_bdg	PF10597	33 - 62	3.1e-07	U5-snRNA binding site 2 of PrP8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80070 AT4G38780
fragaria_vesca	FvH4_6g29610 FvH4_6g43880
malus_domestica	MD00G1072300.v1.1 MD09G1102200.v1.1 MD09G1102300.v1.1 MD09G1102400.v1.1 MD09G1127100.v1.1 MD09G1127300.v1.1 MD17G1212800.v1.1
prunus_persica	Prupe.3G088200_v2.0.a1 Prupe.3G223400_v2.0.a1 Prupe.7G079800_v2.0.a1
pyrus_communis	pycom12419g00050 pycom12419g00060 pycom12419g00070 pycom12419g00080 pycom17g21760 pycom17g21770 pycom17g21780
rosa_chinensis	RchiOBHm_Chr2g0122691 RchiOBHm_Chr2g0135211 RchiOBHm_Chr2g0160631
rosa_laevigata	RLG00000019448 RLG00000021228 RLG00000021230 RLG00000021231 RLG00000028917 RLG00000028918
rosa_multiflora	Rmu_co8242217.1_g000001 Rmu_co8276149.1_g000001 Rmu_sc0000019.1_g000004 Rmu_sc0000674.1_g000029 Rmu_sc0006535.1_g000005 Rmu_sc0011943.1_g000004 Rmu_sc0018128.1_g000001 Rmu_sc0032732.1_g000001 Rmu_sc0040913.1_g000001 Rmu_sc0040914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037020 Rroxscaffold_2G00089540 Rroxscaffold_2G00109400 Rroxscaffold_2G00121310 Rroxscaffold_4G00310000
rosa_rugosa	Rorug01G0172000 Rorug02G0323800 Rorug02G0484400 Rorug02G0484500 Rorug02G0484600
rosa_samantha	Rh1AG188300 Rh1BG154600 Rh1CG174100 Rh1DG068500 Rh2AG309100 Rh2AG371100 Rh2AG549500 Rh2AG549600 Rh2BG307900 Rh2BG380400 Rh2BG563900 Rh2CG286100 Rh2CG359700 Rh2CG534200 Rh2DG397000 Rh2DG572900 Rh2DG573000
rosa_wichuraiana	Rw2G030580 Rw2G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	139
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	2 cut(s)	59, 182
ApeKI	GCWGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	144, 183
AvaII	GGWCC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	141
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	2 cut(s)	144, 183
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	139, 140
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	139, 140
BseXI	GCAGC	1 cut(s)	33
BshFI	GGCC	2 cut(s)	61, 184
BslFI	GGGAC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	61, 184
Bsp143I	GATC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	61, 184
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	139, 140
BssMI	GATC	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	61, 184
Cac8I	GCNNGC	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	144, 183
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	2 cut(s)	61, 184
CviKI_1	RGCY	2 cut(s)	61, 184
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco147I	AGGCCT	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	139
FaeI	CATG	1 cut(s)	100
FaiI	YATR	3 cut(s)	98, 134, 199
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	61, 184
Hin1II	CATG	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	4, 112
Hpy166II	GTNNAC	2 cut(s)	147, 169
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	2 cut(s)	147, 169
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	3 cut(s)	75, 126, 153
Lsp1109I	GCAGC	1 cut(s)	33
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	58, 67
MflI	RGATCY	1 cut(s)	126
MluCI	AATT	2 cut(s)	32, 162
MnlI	CCTC	2 cut(s)	51, 114
MslI	CAYNNNNRTG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	145
PasI	CCCWGGG	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	4, 112
PkrI	GCNGC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	144, 183
PsuI	RGATCY	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	101
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	2 cut(s)	144, 183
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	1 cut(s)	105
SgeI	CNNG	7 cut(s)	20, 74, 92, 109, 128, 152, 153
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	32, 162
SseBI	AGGCCT	1 cut(s)	61
SspI	AATATT	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	139
TaqI	TCGA	1 cut(s)	7
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	2 cut(s)	32, 162
TfiI	GAWTC	2 cut(s)	4, 112
TseI	GCWGC	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	17, 113
VpaK11BI	GGWCC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.