Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000798

Physical Location & Seq

Genomic Coordinates Reverse (-)

30196352 .. 30197280

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAGAAGTCGAATCCAGCTTTGCAATCAAGGAAGTCAGCTTTCCAAGTAATGAAGTCAAAGCCAGGTTTCACTCTCTTGGCTTTGCAGATGAGAGACTTCATGTTAAACCCAGCTATGAACGTCTTGAGTGAGTACATAAAGAAAGGACTGTTGGAGTCGTCGTCTTCGGAGCCTACGGAACTGTTCTTGTCATCCAAAAACGATGCCGAGATTTTCTTCTATCCAATAAGGACTTGGTTTATGCACGAGGCAGCTAATGTGTGTCCAGTTACAATCAATGGAAGTCCATTTAGTCGTGTTATTTTCGCATTCAATCCGGGCATCGGGCAGCTGCTCTTGAAGACCAACATCCATGCTGCTAACACAAGACAAGAGGTAGCTGCGCTTTTGCGTTCAGTTCCAGTTGGGGAACATCCAAAGAGAATCTTTGTGAACGTGTGTAAGGGAATGCATGATCATCCACCGAAGGGTTTCCCTACCATAGCCATGAAAGGAAGTGAGCTCAAGCTTCCTTTCCAGGCTTGCCTTAAGATTGAGGAATTCATTAATTTGATTAAATTAAAGGCTAATAGTACTGGTCAGCCACAGGAGGAGGCAAAGATGTTATTAGAGTTGGATGGCACAAAAACTGAACCGGAACACTTCTGGCCTTCTCTTTCTGAGGTTCAATGGGTGAAGGTTGAGGTTGCTCTGAAGAATCTCATTCTCTCAGACTATGCAAAAAATAACGAAATTGTGGATACAGCAGCTCTCACACAACCTGAGATTCGTAACATTATTTTTCTTGGATCTCATTCGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000375 GO:0000377 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

269

Amino Acids

30.06

Weight (kDa)

9.04

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP8_domainIV	PF12134	62 - 187	3e-13	PRP8 domain IV core
PRP8_domainIV	PF12134	197 - 238	3.3e-06	PRP8 domain IV core

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80070 AT4G38780
fragaria_vesca	FvH4_6g29610 FvH4_6g43880
malus_domestica	MD00G1072300.v1.1 MD09G1102200.v1.1 MD09G1102300.v1.1 MD09G1102400.v1.1 MD09G1127100.v1.1 MD09G1127300.v1.1 MD17G1212800.v1.1
prunus_persica	Prupe.3G088200_v2.0.a1 Prupe.3G223400_v2.0.a1 Prupe.7G079800_v2.0.a1
pyrus_communis	pycom12419g00050 pycom12419g00060 pycom12419g00070 pycom12419g00080 pycom17g21760 pycom17g21770 pycom17g21780
rosa_chinensis	RchiOBHm_Chr2g0122691 RchiOBHm_Chr2g0135211 RchiOBHm_Chr2g0160631
rosa_laevigata	RLG00000019448 RLG00000021228 RLG00000021230 RLG00000021231 RLG00000028917 RLG00000028918
rosa_multiflora	Rmu_co8242217.1_g000001 Rmu_co8276149.1_g000001 Rmu_sc0000019.1_g000004 Rmu_sc0000674.1_g000029 Rmu_sc0006535.1_g000005 Rmu_sc0011943.1_g000004 Rmu_sc0018128.1_g000001 Rmu_sc0032732.1_g000001 Rmu_sc0040913.1_g000001 Rmu_sc0040914.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037020 Rroxscaffold_2G00089540 Rroxscaffold_2G00109400 Rroxscaffold_2G00121310 Rroxscaffold_4G00310000
rosa_rugosa	Rorug01G0172000 Rorug02G0323800 Rorug02G0484400 Rorug02G0484500 Rorug02G0484600
rosa_samantha	Rh1AG188300 Rh1BG154600 Rh1CG174100 Rh1DG068500 Rh2AG309100 Rh2AG371100 Rh2AG549500 Rh2AG549600 Rh2BG307900 Rh2BG380400 Rh2BG563900 Rh2CG286100 Rh2CG359700 Rh2CG534200 Rh2DG397000 Rh2DG572900 Rh2DG573000
rosa_wichuraiana	Rw2G030580 Rw2G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	802
AclWI	GGATC	1 cut(s)	799
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	1 cut(s)	716
AfaI	GTAC	2 cut(s)	137, 577
AfiI	CCNNNNNNNGG	2 cut(s)	326, 470
AflII	CTTAAG	1 cut(s)	530
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	3 cut(s)	316, 343, 671
AjnI	CCWGG	2 cut(s)	64, 519
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	9 cut(s)	20, 41, 116, 257, 334, 383, 505, 511, 752
AluI	AGCT	9 cut(s)	20, 41, 116, 257, 334, 383, 505, 511, 752
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	799
AoxI	GGCC	1 cut(s)	650
ApeKI	GCWGC	6 cut(s)	254, 331, 334, 359, 383, 749
ApoI	RAATTY	1 cut(s)	542
AseI	ATTAAT	1 cut(s)	549
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	507
BauI	CACGAG	1 cut(s)	248
BbsI	GAAGAC	2 cut(s)	159, 350
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	6 cut(s)	266, 321, 343, 346, 370, 761
BccI	CCATC	1 cut(s)	614
BciT130I	CCWGG	2 cut(s)	66, 521
BciVI	GTATCC	1 cut(s)	736
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	90
BfrI	CTTAAG	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	736
BisI	GCNGC	6 cut(s)	255, 332, 335, 360, 384, 750
BlsI	GCNGC	6 cut(s)	256, 333, 336, 361, 385, 751
BmcAI	AGTACT	1 cut(s)	577
Bme1390I	CCNGG	3 cut(s)	66, 321, 521
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	3 cut(s)	66, 321, 521
BmsI	GCATC	2 cut(s)	196, 333
BpiI	GAAGAC	2 cut(s)	159, 350
BpuEI	CTTGAG	2 cut(s)	148, 491
BpuMI	CCSGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	637
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 470
Bse1I	ACTGG	3 cut(s)	269, 404, 583
BseBI	CCWGG	2 cut(s)	66, 521
BseGI	GGATG	5 cut(s)	194, 351, 415, 460, 625
BseLI	CCNNNNNNNGG	2 cut(s)	326, 470
BseMII	CTCAG	3 cut(s)	654, 726, 756
BseNI	ACTGG	3 cut(s)	269, 404, 583
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	6 cut(s)	266, 321, 343, 346, 370, 761
BseYI	CCCAGC	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	802
BshFI	GGCC	1 cut(s)	652
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	320, 638
BslI	CCNNNNNNNGG	2 cut(s)	326, 470
BsmAI	GTCTC	1 cut(s)	90
BsmI	GAATGC	2 cut(s)	311, 456
BsnI	GGCC	1 cut(s)	652
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	457, 791
BspANI	GGCC	1 cut(s)	652
BspCNI	CTCAG	3 cut(s)	655, 725, 757
BspFNI	CGCG	1 cut(s)	802
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	799
BspTI	CTTAAG	1 cut(s)	530
BsrI	ACTGG	3 cut(s)	269, 404, 583
BssMI	GATC	2 cut(s)	457, 791
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	2 cut(s)	66, 521
Bst4CI	ACNGT	2 cut(s)	153, 186
BstAFI	CTTAAG	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	3 cut(s)	663, 712, 765
BstF5I	GGATG	5 cut(s)	194, 351, 415, 460, 625
BstFNI	CGCG	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	460, 794
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	2 cut(s)	457, 791
BstNI	CCWGG	2 cut(s)	66, 521
BstSCI	CCNGG	3 cut(s)	64, 319, 519
BstUI	CGCG	1 cut(s)	802
BstV1I	GCAGC	6 cut(s)	266, 321, 343, 346, 370, 761
BstV2I	GAAGAC	2 cut(s)	159, 350
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
BsuI	GTATCC	1 cut(s)	736
BsuRI	GGCC	1 cut(s)	652
BtsCI	GGATG	5 cut(s)	194, 351, 415, 460, 625
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	136, 576
CviAII	CATG	4 cut(s)	103, 356, 455, 490
CviQI	GTAC	2 cut(s)	136, 576
DdeI	CTNAG	3 cut(s)	663, 712, 765
DpnI	GATC	2 cut(s)	459, 793
DpnII	GATC	2 cut(s)	457, 791
Ecl136II	GAGCTC	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	507
Eco53kI	GAGCTC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	716
EcoICRI	GAGCTC	1 cut(s)	505
EcoRI	GAATTC	1 cut(s)	542
EcoRII	CCWGG	2 cut(s)	64, 519
EcoT22I	ATGCAT	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	4 cut(s)	106, 359, 458, 493
FaiI	YATR	9 cut(s)	104, 119, 140, 245, 357, 456, 485, 491, 720
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	4 cut(s)	102, 355, 454, 489
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	6 cut(s)	255, 332, 335, 360, 384, 750
FokI	GGATG	5 cut(s)	181, 338, 402, 447, 632
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	6 cut(s)	255, 332, 335, 360, 384, 750
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	6 cut(s)	255, 332, 335, 360, 384, 750
GsaI	CCCAGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	652
HapII	CCGG	2 cut(s)	320, 638
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	4 cut(s)	106, 359, 458, 493
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	5 cut(s)	13, 158, 426, 700, 769
HpaII	CCGG	2 cut(s)	320, 638
HphI	GGTGA	1 cut(s)	688
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	4 cut(s)	172, 664, 696, 715
Hpy188III	TCNNGA	2 cut(s)	127, 340
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	463, 663, 673
HpyCH4III	ACNGT	2 cut(s)	153, 186
HpyCH4IV	ACGT	2 cut(s)	123, 438
HpyCH4V	TGCA	5 cut(s)	25, 88, 247, 454, 722
HpyF3I	CTNAG	3 cut(s)	663, 712, 765
HpySE526I	ACGT	2 cut(s)	123, 438
Hsp92II	CATG	4 cut(s)	106, 359, 458, 493
HspAI	GCGC	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	457, 791
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	6 cut(s)	266, 321, 343, 346, 370, 761
LweI	GCATC	2 cut(s)	196, 333
MaeII	ACGT	2 cut(s)	123, 438
MaeIII	GTNAC	2 cut(s)	271, 773
MalI	GATC	2 cut(s)	459, 793
MboI	GATC	2 cut(s)	457, 791
MboII	GAAGA	5 cut(s)	16, 159, 211, 355, 709
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	4 cut(s)	542, 550, 560, 735
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	135, 597
MnlI	CCTC	7 cut(s)	244, 370, 532, 586, 589, 658, 679
Mph1103I	ATGCAT	1 cut(s)	456
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	5 cut(s)	107, 531, 549, 558, 563
MslI	CAYNNNNRTG	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	334
MspCI	CTTAAG	1 cut(s)	530
MspI	CCGG	2 cut(s)	320, 638
MspR9I	CCNGG	3 cut(s)	66, 321, 521
Mva1269I	GAATGC	2 cut(s)	311, 456
MvaI	CCWGG	2 cut(s)	66, 521
MvnI	CGCG	1 cut(s)	802
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	457, 791
NlaIII	CATG	4 cut(s)	106, 359, 458, 493
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	456
PctI	GAATGC	2 cut(s)	311, 456
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	4 cut(s)	13, 426, 700, 769
PkrI	GCNGC	6 cut(s)	256, 333, 336, 361, 385, 751
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	64, 519
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	2 cut(s)	64, 519
PspN4I	GGNNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	791
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	137, 577
RsaNI	GTAC	2 cut(s)	136, 576
RseI	CAYNNNNRTG	1 cut(s)	488
SacI	GAGCTC	1 cut(s)	507
SaqAI	TTAA	5 cut(s)	107, 531, 549, 558, 563
SatI	GCNGC	6 cut(s)	255, 332, 335, 360, 384, 750
Sau3AI	GATC	2 cut(s)	457, 791
ScaI	AGTACT	1 cut(s)	577
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	66, 321, 521
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	2 cut(s)	196, 333
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	3 cut(s)	127, 506, 530
SmoI	CTYRAG	3 cut(s)	127, 506, 530
Sse9I	AATT	4 cut(s)	542, 550, 560, 735
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	3 cut(s)	64, 319, 519
TaaI	ACNGT	2 cut(s)	153, 186
TaiI	ACGT	2 cut(s)	126, 441
TaqI	TCGA	1 cut(s)	11
TasI	AATT	4 cut(s)	542, 550, 560, 735
TatI	WGTACW	2 cut(s)	135, 575
TfiI	GAWTC	4 cut(s)	13, 426, 700, 769
Tru1I	TTAA	5 cut(s)	107, 531, 549, 558, 563
Tru9I	TTAA	5 cut(s)	107, 531, 549, 558, 563
TseI	GCWGC	6 cut(s)	254, 331, 334, 359, 383, 749
TspDTI	ATGAA	6 cut(s)	17, 68, 91, 134, 506, 535
TspGWI	ACGGA	1 cut(s)	194
Vha464I	CTTAAG	1 cut(s)	530
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	473
ZrmI	AGTACT	1 cut(s)	577
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.