Rmu_sc0032732.1_g000001

pre-mRNA-processing-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032732.1
OG0000798
Physical Location & Seq
Reverse (-)
2 .. 428
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032732.1_g000001.1.cds

Sequence Viewer

Length: 311 bp
ctgacctctcatgctaagatcttggaaagcaccaagcaatgggatggggagaagtgcatcattttaacctgcagtttcactcctggttcctgctcgttaactgcatacaaactcactccatctggttatgagtggggacgggtcaacaaagacacaggaagcaatccacacggttacctcccaactcattacgagaaggtccaaatgcttctcagtgatcggttccttggtttctatatgattcctgataatggtccatggaactacaacttcatgggggtgaagcatacacaaggcatgaagtatggtat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000380 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

103

Amino Acids

11.69

Weight (kDa)

8.47

Isoelectric Point (pI)

20.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 39, 251
AjnI CCWGG 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 199, 254
AsuHPI GGTGA 1 cut(s) 292
AvaII GGWCC 2 cut(s) 199, 254
BccI CCATC 2 cut(s) 38, 127
BciT130I CCWGG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 77
BglII AGATCT 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 2 cut(s) 199, 254
BmgT120I GGNCC 2 cut(s) 199, 254
BmiI GGNNCC 2 cut(s) 88, 224
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 226, 257
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 251
Bse3DI GCAATG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 226, 257
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 2 cut(s) 39, 251
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 226
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 39, 251
BsmFI GGGAC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 18, 217
Bsp19I CCATGG 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 88, 224
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 226, 257
BssMI GATC 2 cut(s) 18, 217
BssT1I CCWWGG 2 cut(s) 226, 257
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 15, 212
BstDSI CCRYGG 1 cut(s) 257
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 2 cut(s) 21, 220
BstMBI GATC 2 cut(s) 18, 217
BstNI CCWGG 1 cut(s) 84
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 199, 254
CviAII CATG 4 cut(s) 11, 258, 274, 298
DdeI CTNAG 2 cut(s) 15, 212
DpnI GATC 2 cut(s) 20, 219
DpnII GATC 2 cut(s) 18, 217
Eco130I CCWWGG 2 cut(s) 226, 257
Eco47I GGWCC 2 cut(s) 199, 254
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 226, 257
ErhI CCWWGG 2 cut(s) 226, 257
FaeI CATG 4 cut(s) 14, 261, 277, 301
FaqI GGGAC 1 cut(s) 150
FatI CATG 4 cut(s) 10, 257, 273, 297
FokI GGATG 1 cut(s) 56
Hin1II CATG 4 cut(s) 14, 261, 277, 301
HincII GTYRAC 2 cut(s) 99, 145
HindII GTYRAC 2 cut(s) 99, 145
HinfI GANTC 1 cut(s) 241
HpaI GTTAAC 1 cut(s) 99
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 99, 145
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 2 cut(s) 99, 145
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 57, 72, 104
HpyF3I CTNAG 2 cut(s) 15, 212
Hsp92II CATG 4 cut(s) 14, 261, 277, 301
KspAI GTTAAC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 18, 217
LpnPI CCDG 7 cut(s) 69, 82, 96, 103, 108, 141, 258
LweI GCATC 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 173
MalI GATC 2 cut(s) 20, 219
MboI GATC 2 cut(s) 18, 217
MflI RGATCY 1 cut(s) 18
MnlI CCTC 2 cut(s) 16, 188
MseI TTAA 2 cut(s) 65, 98
MslI CAYNNNNRTG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
NcoI CCATGG 1 cut(s) 257
NdeII GATC 2 cut(s) 18, 217
NlaIII CATG 4 cut(s) 14, 261, 277, 301
NlaIV GGNNCC 2 cut(s) 88, 224
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 82
PspEI GGTNACC 1 cut(s) 173
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 88, 224
PspPI GGNCC 2 cut(s) 199, 254
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 2 cut(s) 65, 98
Sau3AI GATC 2 cut(s) 18, 217
Sau96I GGNCC 2 cut(s) 199, 254
ScrFI CCNGG 1 cut(s) 84
SetI ASST 4 cut(s) 8, 71, 180, 201
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 2 cut(s) 199, 254
SmiMI CAYNNNNRTG 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 2 cut(s) 226, 257
TaaI ACNGT 1 cut(s) 173
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 2 cut(s) 65, 98
Tru9I TTAA 2 cut(s) 65, 98
TscAI CASTG 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 262
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 39
VpaK11BI GGWCC 2 cut(s) 199, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.