pycom12419g00060

pre-mRNA-processing-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012419
OG0000798
Physical Location & Seq
Forward (+)
98034 .. 99092
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12419g00060.1

Sequence Viewer

Length: 387 bp
ATGGCAACTCTTCATCGACTAGCAGGACAGCTGCTTTCCGATCTTATTGACCGCAATTATTTCTACCTGTTTGACATGGAGTCTTTTTTTACAGCCAAAGCACTCAACATGTGCATTCCAGGTGGACCTAAATTTGAACCATTGTATCGGGATATGGAGAAAGGGGATGAGGACTGGAATGAATTTAATGACATCAACAAACTCATTATTCGGTCACCTCTTAGAACAGAGTACAGAATTGCATTCCCTCATCTCTACAACAATAGACCAAGGAAGGTCAAGCTCTGTGTTTATCACACACCCATGGTGATGTACATAAAGACCGAGGATCCTGATCTACCTGCGTTTTATTATCGATCCATTGATACACCCAATACCCAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000380 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

129

Amino Acids

15.27

Weight (kDa)

6.41

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
AciI CCGC 1 cut(s) 52
AclWI GGATC 3 cut(s) 323, 336, 351
AcsI RAATTY 2 cut(s) 131, 182
AfaI GTAC 2 cut(s) 233, 314
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 137
AhdI GACNNNNNGTC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 2 cut(s) 31, 283
AluI AGCT 2 cut(s) 31, 283
AlwI GGATC 3 cut(s) 323, 336, 351
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 2 cut(s) 131, 182
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 207, 319
AvaII GGWCC 1 cut(s) 125
BaeI ACNNNNGTAYC 2 cut(s) 128, 161
BamHI GGATCC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 125
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 333
BsaJI CCNNGG 3 cut(s) 269, 303, 324
Bse1I ACTGG 1 cut(s) 179
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 355
BseDI CCNNGG 3 cut(s) 269, 303, 324
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 333
BseNI ACTGG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 18
BseYI CCCAGC 1 cut(s) 378
BshVI ATCGAT 1 cut(s) 355
BsmI GAATGC 2 cut(s) 114, 242
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 4 cut(s) 40, 328, 334, 356
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 1 cut(s) 52
BspDI ATCGAT 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 3 cut(s) 323, 336, 351
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 269, 303, 324
BssMI GATC 4 cut(s) 40, 328, 334, 356
BssT1I CCWWGG 2 cut(s) 269, 303
Bst2UI CCWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 303
BstEII GGTNACC 1 cut(s) 213
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 4 cut(s) 43, 331, 337, 359
BstMBI GATC 4 cut(s) 40, 328, 334, 356
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 112
BstPI GGTNACC 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
Bsu15I ATCGAT 1 cut(s) 355
BsuTUI ATCGAT 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 172
BveI ACCTGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 125
ClaI ATCGAT 1 cut(s) 355
Csp6I GTAC 2 cut(s) 232, 313
CviAII CATG 3 cut(s) 76, 109, 304
CviJI RGCY 3 cut(s) 31, 95, 283
CviKI_1 RGCY 3 cut(s) 31, 95, 283
CviQI GTAC 2 cut(s) 232, 313
DdeI CTNAG 1 cut(s) 221
DpnI GATC 4 cut(s) 42, 330, 336, 358
DpnII GATC 4 cut(s) 40, 328, 334, 356
DriI GACNNNNNGTC 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 269, 303
Eco47I GGWCC 1 cut(s) 125
Eco91I GGTNACC 1 cut(s) 213
EcoO65I GGTNACC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 269, 303
ErhI CCWWGG 2 cut(s) 269, 303
FaeI CATG 3 cut(s) 79, 112, 307
FaiI YATR 5 cut(s) 77, 110, 155, 305, 317
FatI CATG 3 cut(s) 75, 108, 303
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 382
Hin1II CATG 3 cut(s) 79, 112, 307
HinfI GANTC 1 cut(s) 80
HphI GGTGA 2 cut(s) 207, 319
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 2 cut(s) 149, 332
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 114, 242
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 3 cut(s) 79, 112, 307
Kzo9I GATC 4 cut(s) 40, 328, 334, 356
LpnPI CCDG 7 cut(s) 9, 80, 105, 132, 160, 345, 354
Lsp1109I GCAGC 1 cut(s) 18
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 213
MalI GATC 4 cut(s) 42, 330, 336, 358
MboI GATC 4 cut(s) 40, 328, 334, 356
MflI RGATCY 1 cut(s) 328
MluCI AATT 4 cut(s) 55, 131, 182, 237
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 4 cut(s) 163, 228, 258, 319
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 2 cut(s) 302, 308
MspA1I CMGCKG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 120
Mva1269I GAATGC 2 cut(s) 114, 242
MvaI CCWGG 1 cut(s) 120
NcoI CCATGG 1 cut(s) 303
NdeII GATC 4 cut(s) 40, 328, 334, 356
NlaIII CATG 3 cut(s) 79, 112, 307
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 213
NspI RCATGY 1 cut(s) 112
PciI ACATGT 1 cut(s) 108
PctI GAATGC 2 cut(s) 114, 242
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PscI ACATGT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 125
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 2 cut(s) 233, 314
RsaNI GTAC 2 cut(s) 232, 313
RseI CAYNNNNRTG 2 cut(s) 302, 308
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 4 cut(s) 40, 328, 334, 356
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 120
SetI ASST 8 cut(s) 33, 69, 124, 130, 220, 279, 285, 343
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 302, 308
Sse9I AATT 4 cut(s) 55, 131, 182, 237
SsiI CCGC 1 cut(s) 52
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 2 cut(s) 269, 303
TaqI TCGA 2 cut(s) 16, 355
TaqII GACCGA 2 cut(s) 201, 338
TasI AATT 4 cut(s) 55, 131, 182, 237
TatI WGTACW 2 cut(s) 231, 312
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 2 cut(s) 131, 182
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.