Rmu_sc0040913.1_g000001

pre-mRNA-processing-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040913.1
OG0000798
Physical Location & Seq
Forward (+)
1 .. 692
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040913.1_g000001.1.cds

Sequence Viewer

Length: 692 bp
aactgattggcgtgtgagagcaatatcagctacaaatctacatcttcgtgtcaaccatatttatgtgagttcagaagataccaaggaaacaggctacacttacatcatgccaatgaacattttgaaaaagtttatctgtgttgctgatctgaggacacaagttgctggttacttgtatggtataagcccacctgacaaccctcagattaaggaaattcgctgcattgtgatgccaccacagcggggcacccaccagcaagttcatcttccatcagctcttcctgagcatgatttcctcaattatttggaacctctgggatggatgcacacccagccaaatgagctacctcagctttctcctcaggatctcaccactcatgctaacatgttggataatggcaagcaatgggatagggagaaatgcattattatgacctgcgcttttactccaggttcctgctcgttaactgcatataaacttactccttctggttatgagtggggatgttgttctaacaagaacagcggaagaaacaataatccactagatggataccttccaactcattatgagaaggtccagatgcttctcagtgatcgcttccttggtttctacatggttcctgataattgtccatggaacttcaatttcatgggagtgaggcatgcatgtgacatgaagtatggcatca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

230

Amino Acids

26.38

Weight (kDa)

6.71

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 549
AciI CCGC 2 cut(s) 242, 526
AclWI GGATC 1 cut(s) 373
AcsI RAATTY 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 243, 549
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 2 cut(s) 125, 647
AjnI CCWGG 1 cut(s) 449
AluBI AGCT 4 cut(s) 30, 276, 344, 353
AluI AGCT 4 cut(s) 30, 276, 344, 353
AlwI GGATC 1 cut(s) 373
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 214
AspLEI GCGC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 578
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 578
AxyI CCTNAGG 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 246
BbvCI CCTCAGC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 207
BccI CCATC 3 cut(s) 278, 313, 543
BciT130I CCWGG 1 cut(s) 451
BciVI GTATCC 1 cut(s) 546
BfaI CTAG 1 cut(s) 546
BfuAI ACCTGC 1 cut(s) 444
BfuI GTATCC 1 cut(s) 546
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 451
Bme18I GGWCC 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 4 cut(s) 248, 310, 455, 622
BmrFI CCNGG 1 cut(s) 451
BmsI GCATC 3 cut(s) 220, 313, 574
BpmI CTGGAG 1 cut(s) 433
Bpu10I CCTNAGC 2 cut(s) 283, 349
BsaJI CCNNGG 3 cut(s) 82, 605, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 549
Bse21I CCTNAGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 3 cut(s) 82, 605, 636
BseGI GGATG 3 cut(s) 324, 328, 510
BseLI CCNNNNNNNGG 2 cut(s) 243, 549
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 6 cut(s) 141, 216, 274, 363, 375, 605
BseRI GAGGAG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 1 cut(s) 207
BseYI CCCAGC 1 cut(s) 331
BshNI GGYRCC 1 cut(s) 246
BslI CCNNNNNNNGG 2 cut(s) 243, 549
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 146, 365, 596
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 2 cut(s) 242, 526
BspCNI CTCAG 6 cut(s) 142, 215, 275, 362, 374, 604
BspLI GGNNCC 4 cut(s) 248, 310, 455, 622
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 373
BspQI GCTCTTC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 411
BssECI CCNNGG 3 cut(s) 82, 605, 636
BssMI GATC 3 cut(s) 146, 365, 596
BssT1I CCWWGG 3 cut(s) 82, 605, 636
Bst2UI CCWGG 1 cut(s) 451
Bst6I CTCTTC 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 402, 667
BstDEI CTNAG 6 cut(s) 150, 202, 283, 349, 361, 591
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 3 cut(s) 324, 328, 510
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 3 cut(s) 149, 368, 599
BstMBI GATC 3 cut(s) 146, 365, 596
BstMWI GCNNNNNNNGC 5 cut(s) 27, 239, 332, 341, 350
BstNI CCWGG 1 cut(s) 451
BstNSI RCATGY 3 cut(s) 389, 669, 673
BstSCI CCNGG 1 cut(s) 449
BstSLI GKGCMC 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
Bsu36I CCTNAGG 1 cut(s) 361
BsuI GTATCC 1 cut(s) 546
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 3 cut(s) 324, 328, 510
BtsIMutI CAGTG 1 cut(s) 599
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 402, 667
CfoI GCGC 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 578
CviJI RGCY 7 cut(s) 30, 94, 187, 276, 335, 344, 353
CviKI_1 RGCY 7 cut(s) 30, 94, 187, 276, 335, 344, 353
DdeI CTNAG 6 cut(s) 150, 202, 283, 349, 361, 591
DpnI GATC 3 cut(s) 148, 367, 598
DpnII GATC 3 cut(s) 146, 365, 596
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco130I CCWWGG 3 cut(s) 82, 605, 636
Eco47I GGWCC 1 cut(s) 578
Eco81I CCTNAGG 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 449
EcoT14I CCWWGG 3 cut(s) 82, 605, 636
EcoT22I ATGCAT 2 cut(s) 426, 671
ErhI CCWWGG 3 cut(s) 82, 605, 636
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FauI CCCGC 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 3 cut(s) 331, 335, 517
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 546
GlaI GCGC 1 cut(s) 440
GluI GCNGC 1 cut(s) 221
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 433
HhaI GCGC 1 cut(s) 441
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HincII GTYRAC 2 cut(s) 53, 466
HindII GTYRAC 2 cut(s) 53, 466
HpaI GTTAAC 1 cut(s) 466
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 53, 466
Hpy188I TCNGA 3 cut(s) 74, 151, 205
Hpy188III TCNNGA 4 cut(s) 282, 363, 581, 624
Hpy8I GTNNAC 2 cut(s) 53, 466
HpyAV CCTTC 3 cut(s) 496, 567, 569
HpyCH4V TGCA 5 cut(s) 223, 326, 424, 471, 669
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 239, 332, 341, 350
HpyF3I CTNAG 6 cut(s) 150, 202, 283, 349, 361, 591
HspAI GCGC 1 cut(s) 439
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 3 cut(s) 146, 365, 596
LguI GCTCTTC 1 cut(s) 283
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 3 cut(s) 220, 313, 574
MaeI CTAG 1 cut(s) 546
MaeIII GTNAC 2 cut(s) 168, 672
MalI GATC 3 cut(s) 148, 367, 598
MboI GATC 3 cut(s) 146, 365, 596
MboII GAAGA 5 cut(s) 36, 87, 258, 270, 541
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 4 cut(s) 214, 299, 629, 647
MmeI TCCRAC 2 cut(s) 370, 585
MnlI CCTC 7 cut(s) 145, 211, 306, 322, 358, 370, 655
Mph1103I ATGCAT 2 cut(s) 426, 671
MseI TTAA 2 cut(s) 208, 465
MslI CAYNNNNRTG 7 cut(s) 46, 61, 111, 228, 429, 657, 670
MspA1I CMGCKG 2 cut(s) 242, 526
MspR9I CCNGG 1 cut(s) 451
MvaI CCWGG 1 cut(s) 451
MwoI GCNNNNNNNGC 5 cut(s) 27, 239, 332, 341, 350
NcoI CCATGG 1 cut(s) 636
NdeII GATC 3 cut(s) 146, 365, 596
NlaIV GGNNCC 4 cut(s) 248, 310, 455, 622
NmuCI GTSAC 1 cut(s) 672
NsiI ATGCAT 2 cut(s) 426, 671
NspI RCATGY 3 cut(s) 389, 669, 673
PaeI GCATGC 1 cut(s) 669
PciI ACATGT 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 549
PkrI GCNGC 1 cut(s) 222
PscI ACATGT 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 4 cut(s) 248, 310, 455, 622
PspPI GGNCC 1 cut(s) 578
PsuI RGATCY 1 cut(s) 365
RseI CAYNNNNRTG 7 cut(s) 46, 61, 111, 228, 429, 657, 670
SapI GCTCTTC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 208, 465
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 3 cut(s) 146, 365, 596
Sau96I GGNCC 1 cut(s) 578
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 3 cut(s) 220, 313, 574
SinI GGWCC 1 cut(s) 578
SmiMI CAYNNNNRTG 7 cut(s) 46, 61, 111, 228, 429, 657, 670
SphI GCATGC 1 cut(s) 669
Sse9I AATT 4 cut(s) 214, 299, 629, 647
SsiI CCGC 2 cut(s) 242, 526
SspMI CTAG 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 449
StyI CCWWGG 3 cut(s) 82, 605, 636
TasI AATT 4 cut(s) 214, 299, 629, 647
Tru1I TTAA 2 cut(s) 208, 465
Tru9I TTAA 2 cut(s) 208, 465
TscAI CASTG 1 cut(s) 599
TseFI GTSAC 1 cut(s) 672
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 672
TspDTI ATGAA 3 cut(s) 129, 252, 641
TspRI CASTG 1 cut(s) 599
Van91I CCANNNNNTGG 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 578
XapI RAATTY 1 cut(s) 214
XceI RCATGY 3 cut(s) 389, 669, 673
XspI CTAG 1 cut(s) 546
Zsp2I ATGCAT 2 cut(s) 426, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.