Rh2BG307900

pre-mRNA-processing-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000798
Physical Location & Seq
Forward (+)
35819664 .. 35823100
3437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG307900.1

Sequence Viewer

Length: 702 bp
ATGGAACAATACTTGTCATCCCAAAACTATGGAGAGATTTTCAGCCATCAGGTTATTTGGTTTGTCGACAGGACACTTGAAGAAAATCTTACAATGGAACCCATTGGTGCAGTTATCATATTAAATCCACGGACTGGGCAGCTGTGTCTGAAGGTCAACCCAAGTACAGAAACTGCAGAAGAGGTTGCTGCTCTGGTGCAGTCTTTACCAGCTGGAGAATGTCCGAAACAAATTATTGTGGAGGTGAGTAAGGGAATTCTTGATACACTACAGGTGCACTCGTTGGATTTCCCTAACATAAGCATAAAAGGAAGTGAGCTGCAGCTTCCTTTCCAGGCTCTGCTTAAGATAGAGAAATTTGGTGATCTGATGTTGAAGGCTGCTGAGCCACAGATGGTTCCATTTAACGTCTATGATGATTGGTTGAGTAGCATTTCACCATACGCTGCATTTTCCCGGCTCATTCTGATTCTACGTGCCCTTCATGTGAACGATGAGAAGGCAAAGATGTTATTAAATCCTGACACAACAGTAGTTACTGAACCCAATCACATCTGGCCTTCTCTTTCTGAATTTCAATGGAGGAAGGTTGAGGTTGCTCTGAGGGATCTCATTCTGTCAGATTATGCAGAAAAGAACAATGTGATCACATCCGCCCTGACCCAAGTGGAGATTCGTGATATTATTCTTGGAGCGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000380 GO:0000386 GO:0000387 GO:0000398 GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005737 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0030619 GO:0030620 GO:0030623 GO:0031593 GO:0032496 GO:0032991 GO:0033993 GO:0034097 GO:0034612 GO:0034622 GO:0034641 GO:0036002 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065003 GO:0070530 GO:0070887 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071216 GO:0071219 GO:0071222 GO:0071310 GO:0071345 GO:0071356 GO:0071396 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097157 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140030 GO:0140098 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902494 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
JAB PRO8NT PROCN PROCT PRP8_domainIV RRM_4 U5_2-snRNA_bdg U6-snRNA_bdg

Protein Analysis

233

Amino Acids

26.18

Weight (kDa)

4.75

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP8_domainIV PF12134 2 - 207 8.1e-76 PRP8 domain IV core
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AccI GTMKAC 1 cut(s) 66
AciI CCGC 1 cut(s) 654
AclWI GGATC 1 cut(s) 615
AcsI RAATTY 3 cut(s) 255, 356, 572
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 134
AflII CTTAAG 1 cut(s) 344
AgsI TTSAA 3 cut(s) 80, 376, 578
AjnI CCWGG 1 cut(s) 333
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 4 cut(s) 142, 212, 319, 325
AluI AGCT 4 cut(s) 142, 212, 319, 325
Alw21I GWGCWC 1 cut(s) 279
Alw44I GTGCAC 1 cut(s) 275
AlwI GGATC 1 cut(s) 615
AlwNI CAGNNNCTG 2 cut(s) 173, 340
AoxI GGCC 1 cut(s) 557
ApaLI GTGCAC 1 cut(s) 275
ApeKI GCWGC 6 cut(s) 139, 188, 319, 322, 380, 446
ApoI RAATTY 3 cut(s) 255, 356, 572
AsuC2I CCSGG 1 cut(s) 457
AsuHPI GGTGA 3 cut(s) 256, 374, 429
BaeGI GKGCMC 2 cut(s) 279, 481
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 6 cut(s) 151, 175, 306, 334, 367, 433
BccI CCATC 2 cut(s) 54, 388
BciT130I CCWGG 1 cut(s) 335
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 1 cut(s) 457
BfmI CTRYAG 3 cut(s) 174, 269, 320
BfrI CTTAAG 1 cut(s) 344
BisI GCNGC 6 cut(s) 140, 189, 320, 323, 381, 447
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 6 cut(s) 141, 190, 321, 324, 382, 448
Bme1390I CCNGG 2 cut(s) 335, 457
BmiI GGNNCC 2 cut(s) 99, 399
BmrFI CCNGG 2 cut(s) 335, 457
BmrI ACTGGG 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 457
BsaAI YACGTR 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 17, 650
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 375, 593
BseNI ACTGG 1 cut(s) 139
BseSI GKGCMC 2 cut(s) 279, 481
BseXI GCAGC 6 cut(s) 151, 175, 306, 334, 367, 433
BsgI GTGCAG 2 cut(s) 129, 218
BshFI GGCC 1 cut(s) 559
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 134
BsnI GGCC 1 cut(s) 559
Bsp1286I GDGCHC 2 cut(s) 279, 481
Bsp143I GATC 3 cut(s) 364, 607, 645
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 1 cut(s) 654
BspANI GGCC 1 cut(s) 559
BspCNI CTCAG 2 cut(s) 376, 594
BspLI GGNNCC 2 cut(s) 99, 399
BspMAI CTGCAG 2 cut(s) 178, 324
BspPI GGATC 1 cut(s) 615
BspTI CTTAAG 1 cut(s) 344
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 3 cut(s) 364, 607, 645
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 384, 602
BstDSI CCRYGG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 17, 650
BstKTI GATC 3 cut(s) 367, 610, 648
BstMBI GATC 3 cut(s) 364, 607, 645
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 333, 455
BstSFI CTRYAG 3 cut(s) 174, 269, 320
BstSLI GKGCMC 2 cut(s) 279, 481
BstV1I GCAGC 6 cut(s) 151, 175, 306, 334, 367, 433
BstX2I RGATCY 1 cut(s) 607
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 1 cut(s) 559
BtgI CCRYGG 1 cut(s) 128
BtsCI GGATG 2 cut(s) 17, 650
CaiI CAGNNNCTG 2 cut(s) 173, 340
Csp6I GTAC 1 cut(s) 165
CviAII CATG 1 cut(s) 485
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 2 cut(s) 384, 602
DpnI GATC 3 cut(s) 366, 609, 647
DpnII GATC 3 cut(s) 364, 607, 645
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EciI GGCGGA 1 cut(s) 643
Eco57I CTGAAG 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 488
FaiI YATR 8 cut(s) 30, 119, 299, 305, 414, 442, 486, 627
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FatI CATG 1 cut(s) 484
FbaI TGATCA 1 cut(s) 645
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 6 cut(s) 140, 189, 320, 323, 381, 447
FokI GGATG 2 cut(s) 4, 637
Fsp4HI GCNGC 6 cut(s) 140, 189, 320, 323, 381, 447
GluI GCNGC 6 cut(s) 140, 189, 320, 323, 381, 447
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 559
HapII CCGG 1 cut(s) 457
Hin1II CATG 1 cut(s) 488
HincII GTYRAC 2 cut(s) 67, 157
HindII GTYRAC 2 cut(s) 67, 157
HinfI GANTC 2 cut(s) 469, 673
HpaII CCGG 1 cut(s) 457
HphI GGTGA 3 cut(s) 256, 374, 429
Hpy166II GTNNAC 4 cut(s) 67, 157, 277, 490
Hpy188I TCNGA 7 cut(s) 150, 225, 369, 468, 571, 603, 622
Hpy188III TCNNGA 3 cut(s) 260, 521, 677
Hpy8I GTNNAC 4 cut(s) 67, 157, 277, 490
HpyAV CCTTC 6 cut(s) 145, 370, 491, 493, 570, 580
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4IV ACGT 2 cut(s) 408, 475
HpyCH4V TGCA 7 cut(s) 110, 176, 199, 277, 322, 449, 629
HpyF3I CTNAG 2 cut(s) 384, 602
HpySE526I ACGT 2 cut(s) 408, 475
Hsp92II CATG 1 cut(s) 488
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 3 cut(s) 364, 607, 645
LmnI GCTCC 1 cut(s) 692
Lsp1109I GCAGC 6 cut(s) 151, 175, 306, 334, 367, 433
MaeII ACGT 2 cut(s) 408, 475
MaeIII GTNAC 1 cut(s) 535
MalI GATC 3 cut(s) 366, 609, 647
MboI GATC 3 cut(s) 364, 607, 645
MboII GAAGA 2 cut(s) 92, 191
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 2 cut(s) 279, 481
MluCI AATT 4 cut(s) 231, 255, 356, 572
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 5 cut(s) 175, 235, 576, 586, 597
MseI TTAA 4 cut(s) 122, 345, 405, 515
MspA1I CMGCKG 2 cut(s) 142, 212
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 1 cut(s) 457
MspR9I CCNGG 2 cut(s) 335, 457
MvaI CCWGG 1 cut(s) 335
NciI CCSGG 1 cut(s) 457
NdeII GATC 3 cut(s) 364, 607, 645
NlaIII CATG 1 cut(s) 488
NlaIV GGNNCC 2 cut(s) 99, 399
PfeI GAWTC 2 cut(s) 469, 673
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 6 cut(s) 141, 190, 321, 324, 382, 448
Ppu21I YACGTR 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 99, 399
PstI CTGCAG 2 cut(s) 178, 324
PstNI CAGNNNCTG 2 cut(s) 173, 340
PsuI RGATCY 1 cut(s) 607
PvuII CAGCTG 2 cut(s) 142, 212
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 4 cut(s) 122, 345, 405, 515
SatI GCNGC 6 cut(s) 140, 189, 320, 323, 381, 447
Sau3AI GATC 3 cut(s) 364, 607, 645
ScrFI CCNGG 2 cut(s) 335, 457
SduI GDGCHC 2 cut(s) 279, 481
SfcI CTRYAG 3 cut(s) 174, 269, 320
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 4 cut(s) 231, 255, 356, 572
SsiI CCGC 1 cut(s) 654
StyD4I CCNGG 2 cut(s) 333, 455
TaaI ACNGT 1 cut(s) 532
TaiI ACGT 2 cut(s) 411, 478
TaqI TCGA 1 cut(s) 66
TasI AATT 4 cut(s) 231, 255, 356, 572
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 2 cut(s) 469, 673
Tru1I TTAA 4 cut(s) 122, 345, 405, 515
Tru9I TTAA 4 cut(s) 122, 345, 405, 515
TseI GCWGC 6 cut(s) 139, 188, 319, 322, 380, 446
TspDTI ATGAA 1 cut(s) 473
TspGWI ACGGA 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 134
Vha464I CTTAAG 1 cut(s) 344
VneI GTGCAC 1 cut(s) 275
XapI RAATTY 3 cut(s) 255, 356, 572
XmiI GTMKAC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.