FvH4_1g06851

caffeoyl-CoA O-methyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
3625924 .. 3627135
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06851.t1

Sequence Viewer

Length: 597 bp
ATGATGAGCTTGTTAGTATTCAGGGCTGTGTTTGCTACTGCACCAGATGCGGCTCAGTTACTAGGCATGTTGTTGAAGCTAGTAGATGCAAAGAAGACAATTGAAATTGGAGTTTTCACAGGATACTCTCTTCTCCTCACCGCGCTTACAATTCCTGAGGACGGCAAGATTGTAGCCATATATATAGATCGTGACACATATGATCAAATAGGGTTGCCAATCATAAAAAAAGCTGGTGTTGAGCACAAAATAGACTTCATTGAATCCGAGGCTGTACCAGTTCTTGATAAGCTATTAGAACATCATGGAAATGAAGGCAGTTTCGACTTCGCCTACGTGGATGCTGACAAGGTTAACAACTGGAATTACCATGAGAGACTACTGAAGCTGTTGAAGGTGGGTGGCTTAGTTGTCTACGACAACACGCTCTGCAGAGGAACAGTCGTATTTCCTGAAGAGTTAACTCATCCAGAGTGGAGGAAACAACGCAGACAGCTAGCCATTGAGCATAACAAGTCACTTGCAGCCGATCCTCGTATCGAAATTTCTCATGCTTCTGCGGGTGATGGGATGATGATTTGCCGCCGAATCATATAA

Protein Analysis

199

Amino Acids

22.21

Weight (kDa)

5.97

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 12 - 197 4.5e-65 O-methyltransferase
Methyltransf_24 PF13578 34 - 141 3.7e-08 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 414
AccII CGCG 1 cut(s) 143
AciI CCGC 4 cut(s) 50, 141, 560, 583
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 2 cut(s) 404, 474
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 4 cut(s) 76, 104, 263, 394
AluBI AGCT 6 cut(s) 9, 79, 233, 292, 388, 496
AluI AGCT 6 cut(s) 9, 79, 233, 292, 388, 496
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 1 cut(s) 524
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 543
AspLEI GCGC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 130, 575
AsuNHI GCTAGC 1 cut(s) 496
AxyI CCTNAGG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 536
BccI CCATC 1 cut(s) 560
BceAI ACGGC 1 cut(s) 178
BciVI GTATCC 1 cut(s) 116
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 3 cut(s) 62, 80, 497
BfmI CTRYAG 1 cut(s) 430
BfuI GTATCC 1 cut(s) 116
BisI GCNGC 3 cut(s) 51, 525, 583
BlsI GCNGC 3 cut(s) 52, 526, 584
BmsI GCATC 3 cut(s) 37, 76, 331
BmtI GCTAGC 1 cut(s) 500
BpiI GAAGAC 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 278, 365
Bse21I CCTNAGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 3 cut(s) 346, 466, 576
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 2 cut(s) 68, 147
BseNI ACTGG 2 cut(s) 278, 365
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 536
BsgI GTGCAG 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 3 cut(s) 187, 202, 529
BspACI CCGC 4 cut(s) 50, 141, 560, 583
BspCNI CTCAG 2 cut(s) 67, 148
BspFNI CGCG 1 cut(s) 143
BspMAI CTGCAG 1 cut(s) 434
BspOI GCTAGC 1 cut(s) 500
BspPI GGATC 1 cut(s) 524
BsrI ACTGG 2 cut(s) 278, 365
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 3 cut(s) 187, 202, 529
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 2 cut(s) 135, 450
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 3 cut(s) 54, 156, 406
BstF5I GGATG 3 cut(s) 346, 466, 576
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 3 cut(s) 190, 205, 532
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 3 cut(s) 187, 202, 529
BstMWI GCNNNNNNNGC 2 cut(s) 32, 47
BstNSI RCATGY 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 430
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 536
BstV2I GAAGAC 1 cut(s) 101
Bsu36I CCTNAGG 1 cut(s) 156
BsuI GTATCC 1 cut(s) 116
BtsCI GGATG 3 cut(s) 346, 466, 576
Cac8I GCNNGC 1 cut(s) 498
CfoI GCGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 275
CviAII CATG 4 cut(s) 67, 305, 371, 551
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 3 cut(s) 54, 156, 406
DpnI GATC 3 cut(s) 189, 204, 531
DpnII GATC 3 cut(s) 187, 202, 529
Eam1104I CTCTTC 2 cut(s) 135, 450
EarI CTCTTC 2 cut(s) 135, 450
Eco57I CTGAAG 2 cut(s) 404, 474
Eco81I CCTNAGG 1 cut(s) 156
FaeI CATG 4 cut(s) 70, 308, 374, 554
FatI CATG 4 cut(s) 66, 304, 370, 550
FauI CCCGC 1 cut(s) 553
FauNDI CATATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 202
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 3 cut(s) 51, 525, 583
FokI GGATG 3 cut(s) 353, 453, 583
Fsp4HI GCNGC 3 cut(s) 51, 525, 583
FspBI CTAG 3 cut(s) 62, 80, 497
GlaI GCGC 1 cut(s) 144
GluI GCNGC 3 cut(s) 51, 525, 583
HhaI GCGC 1 cut(s) 145
Hin1II CATG 4 cut(s) 70, 308, 374, 554
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HincII GTYRAC 2 cut(s) 355, 462
HindII GTYRAC 2 cut(s) 355, 462
HinfI GANTC 2 cut(s) 263, 588
HpaI GTTAAC 2 cut(s) 355, 462
HphI GGTGA 2 cut(s) 130, 575
Hpy166II GTNNAC 3 cut(s) 355, 415, 462
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 5 cut(s) 155, 191, 284, 452, 470
Hpy8I GTNNAC 3 cut(s) 355, 415, 462
HpyAV CCTTC 2 cut(s) 308, 388
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 41, 89, 432, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 47
HpyF3I CTNAG 3 cut(s) 54, 156, 406
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 4 cut(s) 70, 308, 374, 554
HspAI GCGC 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 202
KspAI GTTAAC 2 cut(s) 355, 462
Kzo9I GATC 3 cut(s) 187, 202, 529
LpnPI CCDG 9 cut(s) 7, 57, 105, 168, 219, 291, 346, 465, 483
Lsp1109I GCAGC 1 cut(s) 536
LweI GCATC 3 cut(s) 37, 76, 331
MaeI CTAG 3 cut(s) 62, 80, 497
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 3 cut(s) 57, 191, 516
MalI GATC 3 cut(s) 189, 204, 531
MboI GATC 3 cut(s) 187, 202, 529
MboII GAAGA 3 cut(s) 106, 122, 467
MfeI CAATTG 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 5 cut(s) 99, 105, 150, 364, 543
MnlI CCTC 6 cut(s) 146, 151, 262, 428, 471, 543
MseI TTAA 2 cut(s) 354, 461
MslI CAYNNNNRTG 1 cut(s) 309
MunI CAATTG 1 cut(s) 99
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 32, 47
NdeI CATATG 1 cut(s) 199
NdeII GATC 3 cut(s) 187, 202, 529
NheI GCTAGC 1 cut(s) 496
NlaIII CATG 4 cut(s) 70, 308, 374, 554
NmuCI GTSAC 2 cut(s) 191, 516
NspI RCATGY 1 cut(s) 70
PfeI GAWTC 2 cut(s) 263, 588
PkrI GCNGC 3 cut(s) 52, 526, 584
Ppu21I YACGTR 1 cut(s) 337
PstI CTGCAG 1 cut(s) 434
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 2 cut(s) 354, 461
SatI GCNGC 3 cut(s) 51, 525, 583
Sau3AI GATC 3 cut(s) 187, 202, 529
SduI GDGCHC 1 cut(s) 246
SetI ASST 9 cut(s) 11, 81, 235, 294, 339, 354, 390, 399, 498
SfaNI GCATC 3 cut(s) 37, 76, 331
SfcI CTRYAG 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 5 cut(s) 99, 105, 150, 364, 543
SsiI CCGC 4 cut(s) 50, 141, 560, 583
SspMI CTAG 3 cut(s) 62, 80, 497
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 1 cut(s) 339
TaqI TCGA 2 cut(s) 324, 540
TasI AATT 5 cut(s) 99, 105, 150, 364, 543
TauI GCSGC 2 cut(s) 53, 585
TfiI GAWTC 2 cut(s) 263, 588
Tru1I TTAA 2 cut(s) 354, 461
Tru9I TTAA 2 cut(s) 354, 461
TseFI GTSAC 2 cut(s) 191, 516
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 2 cut(s) 191, 516
TspDTI ATGAA 2 cut(s) 247, 327
XapI RAATTY 1 cut(s) 543
XceI RCATGY 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 3 cut(s) 62, 80, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.