RLG00000016335

O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000432
Physical Location & Seq
Reverse (-)
5738986 .. 5740242
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016335

Sequence Viewer

Length: 501 bp
ATGGCCGGTTTGTGCCATGTAATCTCGGTTGGATGCACCGTCTACAGTTCTTCCCCTCCATCCCGGTTGGGCAAGAATCGTCTTGCTGGTTTGATATCTAAGCCTAGGAGGGCTATCACCGGTTCTGCACCTGATGCAGGTCAGTTAATGGGCATGCTCTTGAAACTCGTGAATGCAAATTGGACAATTGAAATTGGAGTTTTTACTGGCTACTTGCTTCTCCTCACTGCCTTTAGGATTCCTGATGATGGCAAGTACTCTTTGACTTTGGTTCTTGTGGTTCATGTTTTAGTGCAGCCAGAGCAGGAAGGGAGTTTTGATTTTGCTTTTGTTGATGCTGACAAGAACAACAATTGGAATTACCACAAAAGGCTAATGAAACTGATCAAGGTTGGTGGAATAGTTATCTATGATAACACACTTTGGGGAGGGACAGTTGCTTTACCTGAAGAAGATGTTCCTGAGACCAAAAGGGAATGGAGGCTATATATGTGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

167

Amino Acids

18.41

Weight (kDa)

8.44

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 43 - 85 3.5e-12 O-methyltransferase
Methyltransf_3 PF01596 95 - 158 1.6e-19 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 137, 248
AgeI ACCGGT 1 cut(s) 119
AgsI TTSAA 2 cut(s) 163, 191
Alw26I GTCTC 1 cut(s) 458
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 295
AsiGI ACCGGT 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 456
AspA2I CCTAGG 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 109
AvrII CCTAGG 1 cut(s) 104
BauI CACGAG 1 cut(s) 167
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 67, 242
BclI TGATCA 1 cut(s) 384
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 296
BlnI CCTAGG 1 cut(s) 104
BlsI GCNGC 1 cut(s) 297
BmcAI AGTACT 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 3 cut(s) 23, 124, 325
BpuMI CCSGG 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 248
Bse118I RCCGGY 2 cut(s) 5, 119
Bse1I ACTGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 38, 59
BseLI CCNNNNNNNGG 2 cut(s) 137, 248
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 307
BsgI GTGCAG 2 cut(s) 111, 314
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 119
BsiSI CCGG 3 cut(s) 6, 64, 120
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 2 cut(s) 137, 248
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 458
Bsp143I GATC 1 cut(s) 384
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 458
BsrFI RCCGGY 2 cut(s) 5, 119
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 2 cut(s) 5, 119
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 1 cut(s) 384
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 104
Bst2BI CACGAG 1 cut(s) 167
Bst4CI ACNGT 3 cut(s) 40, 47, 436
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 99, 462
BstENI CCTNNNNNAGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 38, 59
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 2 cut(s) 134, 301
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 307
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 38, 59
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 155
Cfr10I RCCGGY 2 cut(s) 5, 119
Csp6I GTAC 1 cut(s) 256
CspAI ACCGGT 1 cut(s) 119
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 3 cut(s) 17, 154, 284
CviJI RGCY 7 cut(s) 5, 103, 113, 210, 298, 373, 484
CviKI_1 RGCY 7 cut(s) 5, 103, 113, 210, 298, 373, 484
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 99, 462
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 458
Eco32I GATATC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoRV GATATC 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 3 cut(s) 20, 157, 287
FaiI YATR 7 cut(s) 18, 155, 285, 411, 487, 489, 491
FaqI GGGAC 1 cut(s) 445
FatI CATG 3 cut(s) 16, 153, 283
FbaI TGATCA 1 cut(s) 384
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 45, 46
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 105
GluI GCNGC 1 cut(s) 296
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 6, 64, 120
Hin1II CATG 3 cut(s) 20, 157, 287
HinfI GANTC 2 cut(s) 76, 238
HpaII CCGG 3 cut(s) 6, 64, 120
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 43
Hpy188III TCNNGA 4 cut(s) 160, 169, 242, 461
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 3 cut(s) 40, 47, 436
HpyCH4V TGCA 6 cut(s) 36, 128, 137, 176, 295, 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 301
HpyF3I CTNAG 2 cut(s) 99, 462
Hsp92II CATG 3 cut(s) 20, 157, 287
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 1 cut(s) 384
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 3 cut(s) 23, 124, 325
MaeI CTAG 1 cut(s) 105
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 3 cut(s) 42, 461, 464
MfeI CAATTG 3 cut(s) 186, 352, 496
MluCI AATT 6 cut(s) 178, 186, 192, 352, 358, 496
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 5 cut(s) 66, 102, 233, 422, 474
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 1 cut(s) 146
MspI CCGG 3 cut(s) 6, 64, 120
MspR9I CCNGG 1 cut(s) 64
MunI CAATTG 3 cut(s) 186, 352, 496
Mva1269I GAATGC 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 134, 301
NciI CCSGG 1 cut(s) 64
NdeII GATC 1 cut(s) 384
NlaIII CATG 3 cut(s) 20, 157, 287
NspI RCATGY 1 cut(s) 157
PaeI GCATGC 1 cut(s) 157
PctI GAATGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 76, 238
PinAI ACCGGT 1 cut(s) 119
PkrI GCNGC 1 cut(s) 297
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 1 cut(s) 384
ScaI AGTACT 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 64
SetI ASST 4 cut(s) 133, 142, 393, 448
SfaNI GCATC 3 cut(s) 23, 124, 325
SfcI CTRYAG 1 cut(s) 43
SphI GCATGC 1 cut(s) 157
Sse9I AATT 6 cut(s) 178, 186, 192, 352, 358, 496
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 3 cut(s) 40, 47, 436
TasI AATT 6 cut(s) 178, 186, 192, 352, 358, 496
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 2 cut(s) 76, 238
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 272, 392
TspRI CASTG 1 cut(s) 232
XagI CCTNNNNNAGG 1 cut(s) 135
XceI RCATGY 1 cut(s) 157
XmaJI CCTAGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 1 cut(s) 105
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.