Rh3BG159900

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000432
Physical Location & Seq
Forward (+)
13787069 .. 13789852
2784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG159900.1

Sequence Viewer

Length: 717 bp
ATGGAGTACACTGGAAACAAAAAGATTCTGCCTAATCCAGTCTTGCTGCAAGATGAGGAATTATATAAGTATCTACTAGATACTAGTGTGTACCCGAGAGAACCAGAGCCACTCAAGGAGCTGAGGCAAGCTACTGCAAAACTCCCCAATGCTTGCTTTGGTACTTCACCTGATGCAGGTCAGTTAATGGCCATGCTCTTGAAACTTGGGAATGCAAAAAAGACAATTGAAGTTGGAGTTTTTACTGGCTACTCTCTTCTCCTTACCGCTCTCGCAATTCCTCATGATGGCAAGATCATGGCCATAGATAGAGATCGCACAACATACGAAATAGGCCTCCCAATCATACAAAAAGCTGGAGTGGAACACAAAATCGACTACATTGAATCACCAGCTCTGCCTGTTCTTGACAATCTCTTGGGGGAGCCAAAGAATGAGGCTGATTTTGACTTTGCGTTTGTTGACGCTGATAAAGGAAATTATTGGAATTATCATGAGAGGCTGATGAAGTTGGTGAAGATCGGAGGGATTGTTGTATATGATAACACGCTGTGGGGAGGGACAGTGGCTAAGCCTGAAGAGGTTGTTCCAGAAAACAAAAGGGAGTTGAGGCGTCATGCGGTTGAGTTTAACAAGTTAGTTTCAGCTGACCCTCGAGTTGAAATATCTCATGCTTCTATAGGTGATGGGATCATCATCTGCAGACGCATTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

238

Amino Acids

26.63

Weight (kDa)

5.63

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 28 - 237 4.5e-76 O-methyltransferase
Methyltransf_24 PF13578 76 - 182 2.2e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 2 cut(s) 267, 620
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 2 cut(s) 189, 300
AcuI CTGAAG 1 cut(s) 597
AcyI GRCGYC 1 cut(s) 613
AdeI CACNNNGTG 1 cut(s) 552
AfaI GTAC 3 cut(s) 8, 92, 163
AfiI CCNNNNNNNGG 2 cut(s) 176, 287
AgsI TTSAA 4 cut(s) 202, 230, 386, 662
AhlI ACTAGT 1 cut(s) 83
AluBI AGCT 5 cut(s) 121, 131, 356, 395, 647
AluI AGCT 5 cut(s) 121, 131, 356, 395, 647
AlwI GGATC 1 cut(s) 698
Ama87I CYCGRG 2 cut(s) 94, 654
AoxI GGCC 3 cut(s) 189, 300, 334
ApeKI GCWGC 1 cut(s) 46
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AsuHPI GGTGA 4 cut(s) 159, 381, 526, 695
AvaI CYCGRG 2 cut(s) 94, 654
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BalI TGGCCA 2 cut(s) 191, 302
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 33
BccI CCATC 2 cut(s) 281, 680
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 3 cut(s) 77, 84, 715
BfmI CTRYAG 2 cut(s) 678, 700
BfuAI ACCTGC 1 cut(s) 167
BisI GCNGC 1 cut(s) 47
BlpI GCTNAGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 48
BmeT110I CYCGRG 2 cut(s) 94, 654
BmiI GGNNCC 1 cut(s) 426
BmsI GCATC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 378
Bpu10I CCTNAGC 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 98
BsaBI GATNNNNATC 2 cut(s) 312, 695
BsaHI GRCGYC 1 cut(s) 613
BsaXI ACNNNNNCTCC 4 cut(s) 516, 546, 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 287
Bse1I ACTGG 3 cut(s) 16, 38, 250
Bse8I GATNNNNATC 2 cut(s) 312, 695
BseJI GATNNNNATC 2 cut(s) 312, 695
BseLI CCNNNNNNNGG 2 cut(s) 176, 287
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 3 cut(s) 16, 38, 250
BseXI GCAGC 1 cut(s) 33
BshFI GGCC 3 cut(s) 191, 302, 336
BsiHKCI CYCGRG 2 cut(s) 94, 654
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 2 cut(s) 176, 287
BsmFI GGGAC 1 cut(s) 574
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 3 cut(s) 191, 302, 336
BsoBI CYCGRG 2 cut(s) 94, 654
Bsp143I GATC 4 cut(s) 294, 313, 519, 690
Bsp1720I GCTNAGC 1 cut(s) 570
BspACI CCGC 2 cut(s) 267, 620
BspANI GGCC 3 cut(s) 191, 302, 336
BspCNI CTCAG 1 cut(s) 114
BspHI TCATGA 2 cut(s) 283, 493
BspLI GGNNCC 1 cut(s) 426
BspMAI CTGCAG 1 cut(s) 704
BspMI ACCTGC 1 cut(s) 167
BspPI GGATC 1 cut(s) 698
BsrBI CCGCTC 1 cut(s) 269
BsrI ACTGG 3 cut(s) 16, 38, 250
BssMI GATC 4 cut(s) 294, 313, 519, 690
BssNI GRCGYC 1 cut(s) 613
Bst4CI ACNGT 1 cut(s) 565
Bst6I CTCTTC 2 cut(s) 261, 573
BstACI GRCGYC 1 cut(s) 613
BstC8I GCNNGC 2 cut(s) 129, 154
BstDEI CTNAG 2 cut(s) 122, 570
BstENI CCTNNNNNAGG 1 cut(s) 174
BstKTI GATC 4 cut(s) 297, 316, 522, 693
BstMBI GATC 4 cut(s) 294, 313, 519, 690
BstSFI CTRYAG 2 cut(s) 678, 700
BstV1I GCAGC 1 cut(s) 33
BsuRI GGCC 3 cut(s) 191, 302, 336
BtsIMutI CAGTG 2 cut(s) 9, 570
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 129, 154
CciI TCATGA 2 cut(s) 283, 493
CseI GACGC 2 cut(s) 473, 602
Csp6I GTAC 3 cut(s) 7, 91, 162
CviAII CATG 6 cut(s) 193, 284, 298, 494, 617, 671
CviQI GTAC 3 cut(s) 7, 91, 162
DdeI CTNAG 2 cut(s) 122, 570
DpnI GATC 4 cut(s) 296, 315, 521, 692
DpnII GATC 4 cut(s) 294, 313, 519, 690
DraIII CACNNNGTG 1 cut(s) 552
EaeI YGGCCR 2 cut(s) 189, 300
Eam1104I CTCTTC 2 cut(s) 261, 573
EarI CTCTTC 2 cut(s) 261, 573
Eco147I AGGCCT 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 597
Eco88I CYCGRG 2 cut(s) 94, 654
EcoNI CCTNNNNNAGG 1 cut(s) 174
FaeI CATG 6 cut(s) 196, 287, 301, 497, 620, 674
FaqI GGGAC 1 cut(s) 574
FatI CATG 6 cut(s) 192, 283, 297, 493, 616, 670
Fnu4HI GCNGC 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 3 cut(s) 77, 84, 715
GluI GCNGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 378
HaeIII GGCC 3 cut(s) 191, 302, 336
HgaI GACGC 2 cut(s) 473, 602
Hin1I GRCGYC 1 cut(s) 613
Hin1II CATG 6 cut(s) 196, 287, 301, 497, 620, 674
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 2 cut(s) 25, 386
HphI GGTGA 4 cut(s) 159, 381, 526, 695
Hpy166II GTNNAC 3 cut(s) 9, 91, 463
Hpy188I TCNGA 1 cut(s) 524
Hpy188III TCNNGA 5 cut(s) 199, 284, 407, 494, 590
Hpy8I GTNNAC 3 cut(s) 9, 91, 463
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4V TGCA 5 cut(s) 49, 137, 176, 215, 702
HpyF3I CTNAG 2 cut(s) 122, 570
Hsp92I GRCGYC 1 cut(s) 613
Hsp92II CATG 6 cut(s) 196, 287, 301, 497, 620, 674
Kzo9I GATC 4 cut(s) 294, 313, 519, 690
LmnI GCTCC 2 cut(s) 118, 424
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 163
MaeI CTAG 3 cut(s) 77, 84, 715
MalI GATC 4 cut(s) 296, 315, 521, 692
MbiI CCGCTC 1 cut(s) 269
MboI GATC 4 cut(s) 294, 313, 519, 690
MboII GAAGA 3 cut(s) 248, 529, 590
MfeI CAATTG 1 cut(s) 225
MlsI TGGCCA 2 cut(s) 191, 302
MluCI AATT 5 cut(s) 59, 225, 276, 478, 487
MluNI TGGCCA 2 cut(s) 191, 302
MmeI TCCRAC 1 cut(s) 214
Mox20I TGGCCA 2 cut(s) 191, 302
MscI TGGCCA 2 cut(s) 191, 302
MseI TTAA 2 cut(s) 185, 630
Msp20I TGGCCA 2 cut(s) 191, 302
MspA1I CMGCKG 1 cut(s) 647
MunI CAATTG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 217
NdeII GATC 4 cut(s) 294, 313, 519, 690
NlaIII CATG 6 cut(s) 196, 287, 301, 497, 620, 674
NlaIV GGNNCC 1 cut(s) 426
PaeR7I CTCGAG 1 cut(s) 654
PagI TCATGA 2 cut(s) 283, 493
PceI AGGCCT 1 cut(s) 336
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 25, 386
PkrI GCNGC 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 426
PspXI VCTCGAGB 1 cut(s) 654
PstI CTGCAG 1 cut(s) 704
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 3 cut(s) 8, 92, 163
RsaNI GTAC 3 cut(s) 7, 91, 162
SaqAI TTAA 2 cut(s) 185, 630
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 4 cut(s) 294, 313, 519, 690
SetI ASST 9 cut(s) 123, 133, 172, 181, 358, 397, 585, 649, 685
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 2 cut(s) 678, 700
Sfr274I CTCGAG 1 cut(s) 654
SlaI CTCGAG 1 cut(s) 654
SmlI CTYRAG 2 cut(s) 113, 654
SmoI CTYRAG 2 cut(s) 113, 654
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 5 cut(s) 59, 225, 276, 478, 487
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 2 cut(s) 267, 620
SspMI CTAG 3 cut(s) 77, 84, 715
StuI AGGCCT 1 cut(s) 336
TaaI ACNGT 1 cut(s) 565
TaqI TCGA 2 cut(s) 375, 655
TasI AATT 5 cut(s) 59, 225, 276, 478, 487
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 2 cut(s) 25, 386
Tru1I TTAA 2 cut(s) 185, 630
Tru9I TTAA 2 cut(s) 185, 630
TscAI CASTG 2 cut(s) 16, 570
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 521
TspRI CASTG 2 cut(s) 16, 570
XagI CCTNNNNNAGG 1 cut(s) 174
XhoI CTCGAG 1 cut(s) 654
XspI CTAG 3 cut(s) 77, 84, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.