Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

12043090 .. 12043692

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG078200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAGAGGAGCAGAAAAGCAGGCACCAGGAAGTTGGCCACAAAAGCCTTCTTCAAAGTGATGCTCTTTACCAGGAATATCATGACCACTTCAGCTGATGAAGGTCAATTCTTGAACATGCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATTGGTGTCTACACTGGCTACTCCCTCTTGGCCACAGCCCTTGCTCTCCCTGAAGATGGAAAGGTCAATGATTCATCCCTCAAAATCGATCAAATATACATACAATTTATTTCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019748 GO:0032259 GO:0042221 GO:0042409 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

91

Amino Acids

10.21

Weight (kDa)

9.57

Isoelectric Point (pI)

18.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	25 - 76	1.4e-23	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	165
AcoI	YGGCCR	2 cut(s)	36, 186
AcuI	CTGAAG	2 cut(s)	75, 228
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	55, 115
AjnI	CCWGG	2 cut(s)	26, 71
AluBI	AGCT	2 cut(s)	95, 130
AluI	AGCT	2 cut(s)	95, 130
AoxI	GGCC	2 cut(s)	36, 186
BalI	TGGCCA	2 cut(s)	38, 188
BanI	GGYRCC	1 cut(s)	23
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	2 cut(s)	28, 73
Bme1390I	CCNGG	2 cut(s)	28, 73
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	2 cut(s)	28, 73
BmsI	GCATC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	110
Bsa29I	ATCGAT	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	28, 73
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	38, 188
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	212
BsnI	GGCC	2 cut(s)	38, 188
Bsp143I	GATC	1 cut(s)	244
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	2 cut(s)	38, 188
BspDI	ATCGAT	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	28, 73
BstC8I	GCNNGC	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 127
BstNI	CCWGG	2 cut(s)	28, 73
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	26, 71
BstXI	CCANNNNNNTGG	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	38, 188
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	22
CciI	TCATGA	1 cut(s)	81
ClaI	ATCGAT	1 cut(s)	243
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	3 cut(s)	82, 118, 151
CviJI	RGCY	7 cut(s)	38, 47, 95, 130, 174, 188, 194
CviKI_1	RGCY	7 cut(s)	38, 47, 95, 130, 174, 188, 194
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EaeI	YGGCCR	2 cut(s)	36, 186
Eco130I	CCWWGG	1 cut(s)	150
Eco57I	CTGAAG	2 cut(s)	75, 228
EcoRII	CCWGG	2 cut(s)	26, 71
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	85, 121, 154
FaiI	YATR	5 cut(s)	83, 119, 152, 253, 257
FatI	CATG	3 cut(s)	81, 117, 150
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	38, 188
Hin1II	CATG	3 cut(s)	85, 121, 154
HinfI	GANTC	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	82, 112
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	58, 95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 127
Hsp92II	CATG	3 cut(s)	85, 121, 154
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	6, 13, 40, 58, 85, 156, 219
LweI	GCATC	1 cut(s)	51
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	43, 221
MlsI	TGGCCA	2 cut(s)	38, 188
MluCI	AATT	2 cut(s)	107, 260
MluNI	TGGCCA	2 cut(s)	38, 188
MnlI	CCTC	2 cut(s)	191, 245
Mox20I	TGGCCA	2 cut(s)	38, 188
MscI	TGGCCA	2 cut(s)	38, 188
Msp20I	TGGCCA	2 cut(s)	38, 188
MspA1I	CMGCKG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	28, 73
MvaI	CCWGG	2 cut(s)	28, 73
MwoI	GCNNNNNNNGC	2 cut(s)	44, 127
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	85, 121, 154
NlaIV	GGNNCC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	121
PagI	TCATGA	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	26, 71
PspGI	CCWGG	2 cut(s)	26, 71
PspN4I	GGNNCC	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	28, 73
SetI	ASST	4 cut(s)	97, 106, 132, 222
SfaNI	GCATC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	107, 260
StyD4I	CCNGG	2 cut(s)	26, 71
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	107, 260
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	114, 219
TspRI	CASTG	1 cut(s)	175
XceI	RCATGY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.