Rh2AG154600

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000432
Physical Location & Seq
Reverse (-)
14299471 .. 14299890
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG154600.1

Sequence Viewer

Length: 420 bp
ATGGCCATAGATAGAAATCGTAAGACATACGAAATAGGCCTCCCAATCATACAAAAAGCCGGAGTTGAGTACAAAATCGACTACATCGAATCCCCGGCTCTGCCTGTCCTTGACAATCTTTTGGGAGAACCAAAGAATGAGAGTGATTTCGACTTTGCATTTGTCGATGCTGACAAAGATAACTATTGGAATTATCATGAGAGGCTGATGAAACTGGTGAAGATTGGTGGGATTGTTATGTATGATAATACACTGTGGGGAGGGGCAGTGGCTAAACCTGAAGACGCTGTTCCGGAGACCAAAAGGGAGCTGAGGCGGGCTACAATTGAGTTTAACAAGTCAGTTTCGGCTGACCCACGAGTTGAAATCTCTCATGCTTCTGTAGGAGACGGAATCATCATTTGCAGACGCATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

139

Amino Acids

15.74

Weight (kDa)

5.23

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 1 - 138 5.3e-48 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 1 cut(s) 365
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 290, 381
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 2 cut(s) 3, 37
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 229
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 311
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 290, 381
BfmI CTRYAG 1 cut(s) 381
Bme1390I CCNGG 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bse1I ACTGG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 15
BseAI TCCGGA 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 93
BseJI GATNNNNATC 1 cut(s) 15
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 219
BshFI GGCC 2 cut(s) 5, 39
BsiSI CCGG 3 cut(s) 60, 95, 293
BsmAI GTCTC 2 cut(s) 290, 381
BsmBI CGTCTC 1 cut(s) 381
BsnI GGCC 2 cut(s) 5, 39
Bso31I GGTCTC 1 cut(s) 290
Bsp13I TCCGGA 1 cut(s) 292
BspACI CCGC 1 cut(s) 316
BspANI GGCC 2 cut(s) 5, 39
BspCNI CTCAG 1 cut(s) 303
BspEI TCCGGA 1 cut(s) 292
BspHI TCATGA 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 93
BssSI CACGAG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 311
BstMAI GTCTC 2 cut(s) 290, 381
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 381
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 5, 39
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 2 cut(s) 251, 273
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 196
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 197, 374
CviJI RGCY 9 cut(s) 5, 39, 59, 98, 205, 272, 310, 320, 350
CviKI_1 RGCY 9 cut(s) 5, 39, 59, 98, 205, 272, 310, 320, 350
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 2 cut(s) 200, 377
FaiI YATR 7 cut(s) 8, 28, 50, 198, 239, 243, 375
FatI CATG 2 cut(s) 196, 373
FauI CCCGC 1 cut(s) 309
HaeIII GGCC 2 cut(s) 5, 39
HapII CCGG 3 cut(s) 60, 95, 293
HgaI GACGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 200, 377
HinfI GANTC 2 cut(s) 89, 393
HpaII CCGG 3 cut(s) 60, 95, 293
HphI GGTGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 197, 293
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 158, 405
HpyF3I CTNAG 1 cut(s) 311
Hsp92II CATG 2 cut(s) 200, 377
Kpn2I TCCGGA 1 cut(s) 292
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 6 cut(s) 73, 108, 117, 200, 291, 306
LweI GCATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 232, 293
MfeI CAATTG 1 cut(s) 324
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 190, 324
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 50, 195, 254, 306
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 292
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 60, 95, 293
MspR9I CCNGG 1 cut(s) 95
MunI CAATTG 1 cut(s) 324
NciI CCSGG 1 cut(s) 95
NlaIII CATG 2 cut(s) 200, 377
PagI TCATGA 1 cut(s) 196
PceI AGGCCT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 2 cut(s) 89, 393
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 95
SetI ASST 2 cut(s) 280, 312
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 381
Sse9I AATT 2 cut(s) 190, 324
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 1 cut(s) 316
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 4 cut(s) 78, 87, 150, 165
TasI AATT 2 cut(s) 190, 324
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 2 cut(s) 89, 393
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 258, 273
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 2 cut(s) 258, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.