Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

2256064 .. 2256899

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0028400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTAGTTCTCAACTAGGGTTAATTGGGTGCTCGCTTCTTGTTGTAGCACTGGCCTTACTGAAGGGTGCCACCGCTGAGAGCTACACCGTCGGAGAAGATTTAGGCTGGAACATTCCTCCTGCTGGTTCAGTTGCCTACTCCACCTGGGCCGCCTCGAAGCGATTTCAGCTCGGTGACGTAGTCGTGTTTAAGTGGACTGGGCCGCACACGGTGGCTGAAGTGACACAGGCTGATTTTTCGAGCTGCACAAAGTCGAACCCCATTGCTCTCTATGATTCCAGCCCGGCAAGAATTACGTTGAGCTCGCTTAACGGTACTCGGTACTTCATCTGCACCGAGGACAATCACTGCAGCGTTTTAGGACAGAAGGTGGCCATTACAATCGGAGGAACAGGTCAATATACACCGGGAGATGATAACAGTGATGATGATGACGACTGGTGGAGATGGAACAGTGCTTCTTCTCTCACCATTGGTACTGCCTTGTCTGCAGTCATATCCACTGCAGTCATATTTTTCTTGAACTATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

178

Amino Acids

18.95

Weight (kDa)

4.51

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	42 - 119	4.7e-20	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AciI	CCGC	3 cut(s)	75, 153, 206
AcoI	YGGCCR	1 cut(s)	375
AcuI	CTGAAG	2 cut(s)	83, 240
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	3 cut(s)	319, 326, 481
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	526
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	4 cut(s)	84, 172, 246, 306
AluI	AGCT	4 cut(s)	84, 172, 246, 306
Alw21I	GWGCWC	2 cut(s)	35, 308
AoxI	GGCC	4 cut(s)	54, 150, 203, 375
ApeKI	GCWGC	2 cut(s)	246, 354
AspS9I	GGNCC	2 cut(s)	150, 203
AsuC2I	CCSGG	2 cut(s)	287, 411
AsuHPI	GGTGA	2 cut(s)	188, 463
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	35, 308
BbvI	GCAGC	2 cut(s)	233, 366
BccI	CCATC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	148
BcnI	CCSGG	2 cut(s)	287, 411
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	3 cut(s)	352, 492, 507
BisI	GCNGC	4 cut(s)	153, 206, 247, 355
BlsI	GCNGC	4 cut(s)	154, 207, 248, 356
Bme1390I	CCNGG	3 cut(s)	148, 287, 411
BmgT120I	GGNCC	2 cut(s)	150, 203
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	3 cut(s)	148, 287, 411
BmrI	ACTGGG	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	287, 411
BsaJI	CCNNGG	2 cut(s)	147, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	3 cut(s)	57, 205, 446
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	147, 339
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	57, 205, 446
BseXI	GCAGC	2 cut(s)	233, 366
BsgI	GTGCAG	2 cut(s)	232, 319
BshFI	GGCC	4 cut(s)	56, 152, 205, 377
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	35, 308
BsiSI	CCGG	2 cut(s)	287, 410
BslI	CCNNNNNNNGG	1 cut(s)	125
BsnI	GGCC	4 cut(s)	56, 152, 205, 377
Bsp1286I	GDGCHC	2 cut(s)	35, 308
BspACI	CCGC	3 cut(s)	75, 153, 206
BspANI	GGCC	4 cut(s)	56, 152, 205, 377
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	3 cut(s)	356, 496, 511
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	3 cut(s)	57, 205, 446
BssECI	CCNNGG	2 cut(s)	147, 339
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	5 cut(s)	91, 214, 317, 425, 458
BstC8I	GCNNGC	2 cut(s)	35, 308
BstDEI	CTNAG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 491
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	146, 285, 409
BstSFI	CTRYAG	3 cut(s)	352, 492, 507
BstV1I	GCAGC	2 cut(s)	233, 366
BsuRI	GGCC	4 cut(s)	56, 152, 205, 377
BtsI	GCAGTG	2 cut(s)	349, 504
BtsIMutI	CAGTG	5 cut(s)	50, 349, 430, 463, 504
Cac8I	GCNNGC	2 cut(s)	35, 308
Cfr13I	GGNCC	2 cut(s)	150, 203
Csp6I	GTAC	3 cut(s)	318, 325, 480
CviQI	GTAC	3 cut(s)	318, 325, 480
DdeI	CTNAG	1 cut(s)	78
DraIII	CACNNNGTG	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	2 cut(s)	83, 240
EcoICRI	GAGCTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	308
FaiI	YATR	5 cut(s)	276, 405, 500, 515, 531
Fnu4HI	GCNGC	4 cut(s)	153, 206, 247, 355
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	4 cut(s)	153, 206, 247, 355
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	4 cut(s)	153, 206, 247, 355
HaeIII	GGCC	4 cut(s)	56, 152, 205, 377
HapII	CCGG	2 cut(s)	287, 410
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	2 cut(s)	287, 410
HphI	GGTGA	2 cut(s)	188, 463
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	2 cut(s)	95, 389
Hpy188III	TCNNGA	1 cut(s)	523
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	58, 364
HpyCH4III	ACNGT	5 cut(s)	91, 214, 317, 425, 458
HpyCH4IV	ACGT	2 cut(s)	180, 299
HpyCH4V	TGCA	5 cut(s)	249, 336, 354, 494, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 491
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	2 cut(s)	180, 299
Lsp1109I	GCAGC	2 cut(s)	233, 366
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	2 cut(s)	180, 299
MaeIII	GTNAC	2 cut(s)	176, 223
MboII	GAAGA	2 cut(s)	110, 456
MhlI	GDGCHC	2 cut(s)	35, 308
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	2 cut(s)	24, 294
MluNI	TGGCCA	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	4 cut(s)	129, 166, 334, 383
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	4 cut(s)	23, 192, 312, 535
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	2 cut(s)	287, 410
MspR9I	CCNGG	3 cut(s)	148, 287, 411
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	169, 491
NciI	CCSGG	2 cut(s)	287, 411
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	2 cut(s)	176, 223
PfeI	GAWTC	1 cut(s)	278
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	154, 207, 248, 356
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	150, 203
PstI	CTGCAG	3 cut(s)	356, 496, 511
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	3 cut(s)	319, 326, 481
RsaNI	GTAC	3 cut(s)	318, 325, 480
SacI	GAGCTC	1 cut(s)	308
SaqAI	TTAA	4 cut(s)	23, 192, 312, 535
SatI	GCNGC	4 cut(s)	153, 206, 247, 355
Sau96I	GGNCC	2 cut(s)	150, 203
ScrFI	CCNGG	3 cut(s)	148, 287, 411
SduI	GDGCHC	2 cut(s)	35, 308
SetI	ASST	9 cut(s)	86, 149, 174, 183, 248, 302, 308, 375, 400
SfcI	CTRYAG	3 cut(s)	352, 492, 507
Sse9I	AATT	2 cut(s)	24, 294
SsiI	CCGC	3 cut(s)	75, 153, 206
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	3 cut(s)	146, 285, 409
TaaI	ACNGT	5 cut(s)	91, 214, 317, 425, 458
TaiI	ACGT	2 cut(s)	183, 302
TaqI	TCGA	3 cut(s)	158, 242, 257
TasI	AATT	2 cut(s)	24, 294
TauI	GCSGC	2 cut(s)	155, 208
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	4 cut(s)	23, 192, 312, 535
Tru9I	TTAA	4 cut(s)	23, 192, 312, 535
TscAI	CASTG	5 cut(s)	57, 356, 430, 463, 511
TseFI	GTSAC	2 cut(s)	176, 223
TseI	GCWGC	2 cut(s)	246, 354
Tsp45I	GTSAC	2 cut(s)	176, 223
TspDTI	ATGAA	1 cut(s)	319
TspRI	CASTG	5 cut(s)	57, 356, 430, 463, 511
Tth111I	GACNNNGTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.