Rh2CG077500

O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000432
Physical Location & Seq
Reverse (-)
6265258 .. 6266592
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG077500.1

Sequence Viewer

Length: 600 bp
ATGGCCAGTTTGTGCCATGTAATCTCGGTTGGATGCACCGTCTACAGTTCTTCCCCTCCATTCCGGTTGTGCAAGAATCGTCTTGCTGGTTTGATATCTAAGCCTAGGAGTGTGTTACCATTATATATTCAGAATTCTCGTGCATTGCACCAGAAAGCAAGTGATTGCCAATATATACTGAAGACTGGTGTGTTCCCAAGAGAATCAAATGCCCTAAAGGAAATAAAAATTGCTACTGCAAGTCACCGAAGGGCTATCATCGGTTCTGCACCTGATGCAGGTCAGTTAATGGGCATGCTCTTGAAACTTGTGAATGCAAATTGGACGATTGAAATTGGAGTTTTTACTGGCTACTTGCTTCTCCTCACTGCCTTTAGGATTCCTGATGATGGCAAGTGCAGCCAGAGCAGGAAGGGAGTTTTGATTTTTGTTGATGCTGACAAGAACAACAATTGGAATTACCACAAAAGGCTAATGAAACTGATCCAGGTTGGTGGAATAGTTATCTATGATAACACACTTTGGGGAGGGACAGTTGCTTTACCTGAAGAAGATGTTACTGAGACCAAAAGGGAATGGAGGCTATATATGTGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

199

Amino Acids

22.24

Weight (kDa)

9.46

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 68 - 133 5.1e-15 O-methyltransferase
Methyltransf_3 PF01596 141 - 191 6.6e-15 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 42
AclWI GGATC 1 cut(s) 478
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 2 cut(s) 200, 567
AfiI CCNNNNNNNGG 2 cut(s) 278, 389
AgsI TTSAA 2 cut(s) 304, 332
AjnI CCWGG 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 1 cut(s) 478
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 399
ApoI RAATTY 1 cut(s) 133
AspA2I CCTAGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 236
AvrII CCTAGG 1 cut(s) 104
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 411
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 1 cut(s) 488
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 269
BisI GCNGC 1 cut(s) 400
BlnI CCTAGG 1 cut(s) 104
BlsI GCNGC 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 488
BmrFI CCNGG 1 cut(s) 488
BmsI GCATC 3 cut(s) 23, 265, 424
BpiI GAAGAC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 389
Bse1I ACTGG 3 cut(s) 6, 190, 352
Bse3DI GCAATG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 2 cut(s) 278, 389
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 3 cut(s) 6, 190, 352
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 411
BsgI GTGCAG 2 cut(s) 252, 418
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 544
BslI CCNNNNNNNGG 2 cut(s) 278, 389
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 1 cut(s) 544
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 557
Bsp143I GATC 1 cut(s) 483
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 553
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 1 cut(s) 478
BspTNI GGTCTC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 3 cut(s) 6, 190, 352
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 1 cut(s) 483
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 104
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 3 cut(s) 40, 47, 535
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 99, 561
BstENI CCTNNNNNAGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 1 cut(s) 486
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 1 cut(s) 483
BstMWI GCNNNNNNNGC 3 cut(s) 275, 399, 405
BstNI CCWGG 1 cut(s) 488
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 486
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 494
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 296
CviAII CATG 2 cut(s) 17, 295
CviJI RGCY 7 cut(s) 5, 103, 254, 351, 402, 472, 583
CviKI_1 RGCY 7 cut(s) 5, 103, 254, 351, 402, 472, 583
DdeI CTNAG 2 cut(s) 99, 561
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 557
Eco32I GATATC 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 200, 567
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 2 cut(s) 20, 298
FaqI GGGAC 1 cut(s) 544
FatI CATG 2 cut(s) 16, 294
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 400
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 400
FspBI CTAG 1 cut(s) 105
GluI GCNGC 1 cut(s) 400
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 64
Hin1II CATG 2 cut(s) 20, 298
HinfI GANTC 3 cut(s) 76, 203, 379
HpaII CCGG 1 cut(s) 64
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 301, 383
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 243, 406
HpyCH4III ACNGT 3 cut(s) 40, 47, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 399, 405
HpyF3I CTNAG 2 cut(s) 99, 561
Hsp92II CATG 2 cut(s) 20, 298
Kzo9I GATC 1 cut(s) 483
Lsp1109I GCAGC 1 cut(s) 411
LweI GCATC 3 cut(s) 23, 265, 424
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 3 cut(s) 114, 242, 556
MalI GATC 1 cut(s) 485
MboI GATC 1 cut(s) 483
MboII GAAGA 4 cut(s) 42, 193, 560, 563
MfeI CAATTG 2 cut(s) 451, 595
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 133, 228, 319, 333, 451, 457, 595
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 4 cut(s) 66, 374, 521, 573
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 287
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 488
MunI CAATTG 2 cut(s) 451, 595
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 3 cut(s) 275, 399, 405
NdeII GATC 1 cut(s) 483
NlaIII CATG 2 cut(s) 20, 298
NmuCI GTSAC 1 cut(s) 242
NspI RCATGY 1 cut(s) 298
PaeI GCATGC 1 cut(s) 298
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 3 cut(s) 76, 203, 379
PkrI GCNGC 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 1 cut(s) 400
Sau3AI GATC 1 cut(s) 483
ScrFI CCNGG 1 cut(s) 488
SetI ASST 4 cut(s) 274, 283, 492, 547
SfaNI GCATC 3 cut(s) 23, 265, 424
SfcI CTRYAG 1 cut(s) 43
SphI GCATGC 1 cut(s) 298
Sse9I AATT 7 cut(s) 133, 228, 319, 333, 451, 457, 595
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 3 cut(s) 40, 47, 535
TasI AATT 7 cut(s) 133, 228, 319, 333, 451, 457, 595
TfiI GAWTC 3 cut(s) 76, 203, 379
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 399
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 491
TspRI CASTG 1 cut(s) 373
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 1 cut(s) 133
XceI RCATGY 1 cut(s) 298
XmaJI CCTAGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.