FvH4_2g05780

caffeoyl-CoA O-methyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
4728149 .. 4730075
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05780.t2

Sequence Viewer

Length: 735 bp
ATGGCAGAAAATGGAGAAGAGCAGAAAAGCAGGCACCAGGAAGTTGGCCACAAAAGCCTTCTTCAAAGTGATGCTCTTTACCAGTATATATTGGAGACTAGTGTGTACCCAAGAGAGCCTGAATGCATGAAGGAGCTCAGAGAGTTGACTGCAAAGCACCCATGGAACATCATGACCACCTCAGCTGATGAAGGTCAATTCTTGAACATGCTTCTCAAGCTGATCAATGCCAAGAACACCATGGAGATCGGTGTCTACACTGGCTACTCCCTCTTGGCCACAGCCCTTGCTATCCCTGAAGATGGAAAGATCTTGGCCATGGACATCAACAAAGAGAACTACGAATTGGGTCTGCCAGTCATCGAGAAAGCTGGTGTTGCCCACAAGATTGACTTCAGGGAAGGCCCTGCCCTCCCCGTCCTTGACCAAATGATCGAAGACGAGAAGAACCATGGATCGTTCGACTTCATCTTCGTTGACGCAGACAAGGACAACTACATCAACTACCACAAGAGGCTGATCGACCTGGTCAAGGTCGGGGGCCTGATCGGCTACGACAACACCCTCTGGAACGGCTCTGTGGTGGCGCCACCGGATGCTCCTCTCCGCAAGTACGTCAGGTACTACAGGGACTTTGTGCTCGAGCTCAACAAGGCTCTTGCTGCAGACCCCAGAATTGAGATTTGCATGCTTCCAGTTGGTGATGGCATCACTCTCTGCCGTCGGATTAAATGA

Protein Analysis

245

Amino Acids

27.66

Weight (kDa)

5.23

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 32 - 157 6.3e-54 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 33, 586
AccI GTMKAC 1 cut(s) 255
AciI CCGC 1 cut(s) 607
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 3 cut(s) 46, 276, 315
AcuI CTGAAG 2 cut(s) 318, 379
AcyI GRCGYC 1 cut(s) 587
AfaI GTAC 3 cut(s) 107, 614, 623
AfiI CCNNNNNNNGG 2 cut(s) 302, 532
AgsI TTSAA 2 cut(s) 65, 205
AhlI ACTAGT 1 cut(s) 98
AjnI CCWGG 2 cut(s) 36, 525
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 5 cut(s) 136, 185, 220, 371, 646
AluI AGCT 5 cut(s) 136, 185, 220, 371, 646
Alw21I GWGCWC 3 cut(s) 138, 642, 648
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 463
Ama87I CYCGRG 1 cut(s) 641
AoxI GGCC 5 cut(s) 46, 276, 315, 403, 541
ApeKI GCWGC 1 cut(s) 662
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 2 cut(s) 404, 541
AsuHPI GGTGA 1 cut(s) 713
AvaI CYCGRG 1 cut(s) 641
BalI TGGCCA 3 cut(s) 48, 278, 317
BanI GGYRCC 2 cut(s) 33, 586
BanII GRGCYC 2 cut(s) 138, 648
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 3 cut(s) 138, 642, 648
BbvCI CCTCAGC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 649
BccI CCATC 2 cut(s) 296, 698
BceAI ACGGC 2 cut(s) 589, 705
BciT130I CCWGG 2 cut(s) 38, 527
BclI TGATCA 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 89
BcuI ACTAGT 1 cut(s) 98
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 2 cut(s) 625, 663
BfoI RGCGCY 1 cut(s) 590
BglI GCCNNNNNGGC 1 cut(s) 549
BglII AGATCT 1 cut(s) 309
BisI GCNGC 1 cut(s) 663
BlsI GCNGC 1 cut(s) 664
Bme1390I CCNGG 2 cut(s) 38, 527
BmeT110I CYCGRG 1 cut(s) 641
BmgT120I GGNCC 2 cut(s) 404, 541
BmiI GGNNCC 3 cut(s) 35, 542, 588
BmrFI CCNGG 2 cut(s) 38, 527
BmsI GCATC 3 cut(s) 61, 586, 717
BpiI GAAGAC 1 cut(s) 444
Bpu10I CCTNAGC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 587
BsaJI CCNNGG 4 cut(s) 161, 240, 318, 451
BsaWI WCCGGW 1 cut(s) 592
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 532
Bse1I ACTGG 4 cut(s) 82, 265, 356, 695
BseBI CCWGG 2 cut(s) 38, 527
BseDI CCNNGG 4 cut(s) 161, 240, 318, 451
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 302, 532
BseMII CTCAG 2 cut(s) 151, 195
BseNI ACTGG 4 cut(s) 82, 265, 356, 695
BseRI GAGGAG 1 cut(s) 591
BseXI GCAGC 1 cut(s) 649
BshFI GGCC 5 cut(s) 48, 278, 317, 405, 543
BshNI GGYRCC 2 cut(s) 33, 586
BsiHKAI GWGCWC 3 cut(s) 138, 642, 648
BsiHKCI CYCGRG 1 cut(s) 641
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 2 cut(s) 302, 532
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 644
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 5 cut(s) 48, 278, 317, 405, 543
BsoBI CYCGRG 1 cut(s) 641
Bsp1286I GDGCHC 3 cut(s) 138, 642, 648
Bsp143I GATC 7 cut(s) 222, 246, 309, 432, 455, 519, 546
Bsp19I CCATGG 4 cut(s) 161, 240, 318, 451
BspACI CCGC 1 cut(s) 607
BspANI GGCC 5 cut(s) 48, 278, 317, 405, 543
BspCNI CTCAG 2 cut(s) 150, 194
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 35, 542, 588
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 1 cut(s) 463
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 33, 586
BsrI ACTGG 4 cut(s) 82, 265, 356, 695
BssECI CCNNGG 4 cut(s) 161, 240, 318, 451
BssMI GATC 7 cut(s) 222, 246, 309, 432, 455, 519, 546
BssNI GRCGYC 1 cut(s) 587
BssT1I CCWWGG 4 cut(s) 161, 240, 318, 451
Bst2UI CCWGG 2 cut(s) 38, 527
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 32, 689
BstDEI CTNAG 2 cut(s) 137, 181
BstDSI CCRYGG 4 cut(s) 161, 240, 318, 451
BstENI CCTNNNNNAGG 1 cut(s) 530
BstF5I GGATG 1 cut(s) 601
BstH2I RGCGCY 1 cut(s) 590
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 7 cut(s) 225, 249, 312, 435, 458, 522, 549
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 7 cut(s) 222, 246, 309, 432, 455, 519, 546
BstMWI GCNNNNNNNGC 5 cut(s) 54, 217, 377, 549, 662
BstNI CCWGG 2 cut(s) 38, 527
BstNSI RCATGY 2 cut(s) 211, 691
BstSCI CCNGG 2 cut(s) 36, 525
BstSFI CTRYAG 2 cut(s) 625, 663
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 309
BstXI CCANNNNNNTGG 1 cut(s) 44
BstYI RGATCY 1 cut(s) 309
BsuRI GGCC 5 cut(s) 48, 278, 317, 405, 543
BtgI CCRYGG 4 cut(s) 161, 240, 318, 451
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 32, 689
CciI TCATGA 1 cut(s) 171
CfoI GCGC 1 cut(s) 589
Cfr13I GGNCC 2 cut(s) 404, 541
CseI GACGC 1 cut(s) 488
CsiI ACCWGGT 1 cut(s) 525
Csp6I GTAC 3 cut(s) 106, 613, 622
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 8 cut(s) 127, 162, 172, 208, 241, 319, 452, 688
CviQI GTAC 3 cut(s) 106, 613, 622
DdeI CTNAG 2 cut(s) 137, 181
DinI GGCGCC 1 cut(s) 588
DpnI GATC 7 cut(s) 224, 248, 311, 434, 457, 521, 548
DpnII GATC 7 cut(s) 222, 246, 309, 432, 455, 519, 546
EaeI YGGCCR 3 cut(s) 46, 276, 315
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Ecl136II GAGCTC 2 cut(s) 136, 646
Eco130I CCWWGG 4 cut(s) 161, 240, 318, 451
Eco24I GRGCYC 2 cut(s) 138, 648
Eco53kI GAGCTC 2 cut(s) 136, 646
Eco57I CTGAAG 2 cut(s) 318, 379
Eco88I CYCGRG 1 cut(s) 641
EcoICRI GAGCTC 2 cut(s) 136, 646
EcoNI CCTNNNNNAGG 1 cut(s) 530
EcoO109I RGGNCCY 2 cut(s) 404, 541
EcoRII CCWGG 2 cut(s) 36, 525
EcoT14I CCWWGG 4 cut(s) 161, 240, 318, 451
EcoT22I ATGCAT 1 cut(s) 128
EcoT38I GRGCYC 2 cut(s) 138, 648
EgeI GGCGCC 1 cut(s) 588
EheI GGCGCC 1 cut(s) 588
ErhI CCWWGG 4 cut(s) 161, 240, 318, 451
FaeI CATG 8 cut(s) 130, 165, 175, 211, 244, 322, 455, 691
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 644
FatI CATG 8 cut(s) 126, 161, 171, 207, 240, 318, 451, 687
FbaI TGATCA 1 cut(s) 222
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 663
FokI GGATG 1 cut(s) 608
FriOI GRGCYC 2 cut(s) 138, 648
Fsp4HI GCNGC 1 cut(s) 663
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 588
GluI GCNGC 1 cut(s) 663
HaeII RGCGCY 1 cut(s) 590
HaeIII GGCC 5 cut(s) 48, 278, 317, 405, 543
HapII CCGG 1 cut(s) 593
HgaI GACGC 1 cut(s) 488
HhaI GCGC 1 cut(s) 589
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 8 cut(s) 130, 165, 175, 211, 244, 322, 455, 691
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HincII GTYRAC 2 cut(s) 147, 478
HindII GTYRAC 2 cut(s) 147, 478
HpaII CCGG 1 cut(s) 593
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 4 cut(s) 106, 147, 256, 478
Hpy188I TCNGA 2 cut(s) 140, 726
Hpy188III TCNNGA 4 cut(s) 172, 202, 364, 568
Hpy8I GTNNAC 4 cut(s) 106, 147, 256, 478
Hpy99I CGWCG 1 cut(s) 726
HpyAV CCTTC 4 cut(s) 68, 124, 185, 395
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 4 cut(s) 126, 152, 665, 687
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 217, 377, 549, 662
HpyF3I CTNAG 2 cut(s) 137, 181
HpySE526I ACGT 1 cut(s) 615
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 8 cut(s) 130, 165, 175, 211, 244, 322, 455, 691
HspAI GCGC 1 cut(s) 587
KasI GGCGCC 1 cut(s) 586
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 7 cut(s) 222, 246, 309, 432, 455, 519, 546
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 133, 604
Lsp1109I GCAGC 1 cut(s) 649
LweI GCATC 3 cut(s) 61, 586, 717
MabI ACCWGGT 1 cut(s) 525
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 615
MalI GATC 7 cut(s) 224, 248, 311, 434, 457, 521, 548
MboI GATC 7 cut(s) 222, 246, 309, 432, 455, 519, 546
MboII GAAGA 6 cut(s) 29, 53, 311, 449, 457, 463
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 3 cut(s) 138, 642, 648
MlsI TGGCCA 3 cut(s) 48, 278, 317
MluCI AATT 3 cut(s) 197, 344, 675
MluNI TGGCCA 3 cut(s) 48, 278, 317
Mly113I GGCGCC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 704
MnlI CCTC 6 cut(s) 190, 281, 422, 507, 575, 612
Mox20I TGGCCA 3 cut(s) 48, 278, 317
Mph1103I ATGCAT 1 cut(s) 128
MscI TGGCCA 3 cut(s) 48, 278, 317
MseI TTAA 1 cut(s) 729
Msp20I TGGCCA 3 cut(s) 48, 278, 317
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 2 cut(s) 38, 527
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 2 cut(s) 38, 527
MwoI GCNNNNNNNGC 5 cut(s) 54, 217, 377, 549, 662
NarI GGCGCC 1 cut(s) 587
NcoI CCATGG 4 cut(s) 161, 240, 318, 451
NdeII GATC 7 cut(s) 222, 246, 309, 432, 455, 519, 546
NlaIII CATG 8 cut(s) 130, 165, 175, 211, 244, 322, 455, 691
NlaIV GGNNCC 3 cut(s) 35, 542, 588
NsiI ATGCAT 1 cut(s) 128
NspI RCATGY 2 cut(s) 211, 691
PaeI GCATGC 1 cut(s) 691
PaeR7I CTCGAG 1 cut(s) 641
PagI TCATGA 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 12
PctI GAATGC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 527
PkrI GCNGC 1 cut(s) 664
PluTI GGCGCC 1 cut(s) 590
Psp124BI GAGCTC 2 cut(s) 138, 648
Psp6I CCWGG 2 cut(s) 36, 525
PspGI CCWGG 2 cut(s) 36, 525
PspN4I GGNNCC 3 cut(s) 35, 542, 588
PspPI GGNCC 2 cut(s) 404, 541
PspXI VCTCGAGB 1 cut(s) 641
PstI CTGCAG 1 cut(s) 667
PsuI RGATCY 1 cut(s) 309
PsyI GACNNNGTC 1 cut(s) 527
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 3 cut(s) 107, 614, 623
RsaNI GTAC 3 cut(s) 106, 613, 622
SacI GAGCTC 2 cut(s) 138, 648
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 1 cut(s) 663
Sau3AI GATC 7 cut(s) 222, 246, 309, 432, 455, 519, 546
Sau96I GGNCC 2 cut(s) 404, 541
ScrFI CCNGG 2 cut(s) 38, 527
SduI GDGCHC 3 cut(s) 138, 642, 648
SexAI ACCWGGT 1 cut(s) 525
SfaNI GCATC 3 cut(s) 61, 586, 717
SfcI CTRYAG 2 cut(s) 625, 663
SfoI GGCGCC 1 cut(s) 588
Sfr274I CTCGAG 1 cut(s) 641
SlaI CTCGAG 1 cut(s) 641
SmlI CTYRAG 2 cut(s) 215, 641
SmoI CTYRAG 2 cut(s) 215, 641
SpeI ACTAGT 1 cut(s) 98
SphI GCATGC 1 cut(s) 691
Sse9I AATT 3 cut(s) 197, 344, 675
SsiI CCGC 1 cut(s) 607
SspDI GGCGCC 1 cut(s) 586
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 2 cut(s) 138, 648
StyD4I CCNGG 2 cut(s) 36, 525
StyI CCWWGG 4 cut(s) 161, 240, 318, 451
TaiI ACGT 1 cut(s) 618
TaqI TCGA 5 cut(s) 363, 435, 462, 522, 642
TasI AATT 3 cut(s) 197, 344, 675
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 662
TspDTI ATGAA 3 cut(s) 143, 204, 457
TspRI CASTG 1 cut(s) 265
Tth111I GACNNNGTC 1 cut(s) 527
XagI CCTNNNNNAGG 1 cut(s) 530
XceI RCATGY 2 cut(s) 211, 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 99
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.