Rroxscaffold_2G00140570

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000432
Physical Location & Seq
Forward (+)
78813586 .. 78815208
1623 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00140570.1

Sequence Viewer

Length: 720 bp
ATGGAGCACACTGCAGGAAGCAAAAAGTTTCTGCCTAATCCAGTCCTGCTGCAAGATGAGGAATTACACAAGTATATACTAGAAACTAGTGTGTACCCTCGAGAACCAGAGCCACTCAAGGAGCTGAGGGAAGCCACTGCAAAACTCCCCAATGCTTTCTTTGGGACTGCACCTGATGCAGGTCAGCTAATGGCCATGCTCTTGAAACTTGTGAATGCAAAGAAGACAATTGAAGTTGGAGTTTTTACTGGATACTCTCTTCTCCTTACGGCTCTCACAATCCCTGATGACGGCAAGATTATGGCCATAGATAGAAATCGTAAAACATATGAAATAGGCCTCCCAATCATACAAAAAGCCGGAGTTGAGTACAAAATCGACTACATCGAATCCCCGGCTCTGCCTGTGCTTGACAATCTCTTGGGAGAACCAAAGAATGAGGGTGATTTCGACTTTGCATTTGTCGATGCTGACAAAGATAACTATTGGAATTATCATAAGAGGCTGATGAAACTGGTGAAGATTGGTGGGATTGTTATGTATGATAACACACTGTGGGGAGGGGCAGTGGCTAAGCCTGAAGACGCTGTTCCGGAAGCCAAAAGGGAGCTGAGGCGGGCTACAATTGAGTTTAACAAGTCAGTTTCCGCTGACCCTCGAGTTGAAATCTCTCATGCTTCTGTAGGAGATGGAATCATCATCTGCAGACGCATTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

239

Amino Acids

26.7

Weight (kDa)

5.69

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 28 - 238 3e-77 O-methyltransferase
Methyltransf_24 PF13578 77 - 183 2.5e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 170
AccIII TCCGGA 1 cut(s) 592
AciI CCGC 2 cut(s) 616, 648
AcoI YGGCCR 2 cut(s) 192, 303
AcuI CTGAAG 1 cut(s) 600
AdeI CACNNNGTG 1 cut(s) 555
AfaI GTAC 2 cut(s) 95, 371
AfiI CCNNNNNNNGG 2 cut(s) 179, 290
AgsI TTSAA 3 cut(s) 205, 233, 665
AhlI ACTAGT 1 cut(s) 86
AluBI AGCT 3 cut(s) 124, 187, 610
AluI AGCT 3 cut(s) 124, 187, 610
Alw21I GWGCWC 1 cut(s) 9
Ama87I CYCGRG 2 cut(s) 99, 657
Aor13HI TCCGGA 1 cut(s) 592
AoxI GGCC 3 cut(s) 192, 303, 337
ApeKI GCWGC 1 cut(s) 49
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 455, 529
AvaI CYCGRG 2 cut(s) 99, 657
BalI TGGCCA 2 cut(s) 194, 305
BbsI GAAGAC 2 cut(s) 230, 588
Bbv12I GWGCWC 1 cut(s) 9
BbvCI CCTCAGC 2 cut(s) 125, 611
BbvI GCAGC 1 cut(s) 36
BccI CCATC 1 cut(s) 683
BceAI ACGGC 2 cut(s) 285, 307
BciVI GTATCC 1 cut(s) 245
BcnI CCSGG 1 cut(s) 395
BcuI ACTAGT 1 cut(s) 86
BfaI CTAG 2 cut(s) 80, 87
BfmI CTRYAG 3 cut(s) 12, 681, 703
BfuAI ACCTGC 1 cut(s) 170
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 395
BmeT110I CYCGRG 2 cut(s) 99, 657
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 2 cut(s) 166, 457
BpiI GAAGAC 2 cut(s) 230, 588
Bpu10I CCTNAGC 2 cut(s) 125, 611
Bpu1102I GCTNAGC 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 592
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 290
Bse1I ACTGG 3 cut(s) 41, 253, 519
Bse8I GATNNNNATC 1 cut(s) 315
BseAI TCCGGA 1 cut(s) 592
BseDI CCNNGG 1 cut(s) 393
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 179, 290
BseMII CTCAG 2 cut(s) 116, 602
BseNI ACTGG 3 cut(s) 41, 253, 519
BseXI GCAGC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 3 cut(s) 194, 305, 339
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 2 cut(s) 99, 657
BsiSI CCGG 3 cut(s) 360, 395, 593
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 179, 290
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 3 cut(s) 194, 305, 339
BsoBI CYCGRG 2 cut(s) 99, 657
Bsp1286I GDGCHC 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 592
Bsp1720I GCTNAGC 1 cut(s) 573
BspACI CCGC 2 cut(s) 616, 648
BspANI GGCC 3 cut(s) 194, 305, 339
BspCNI CTCAG 2 cut(s) 117, 603
BspEI TCCGGA 1 cut(s) 592
BspMAI CTGCAG 2 cut(s) 16, 707
BspMI ACCTGC 1 cut(s) 170
BsrI ACTGG 3 cut(s) 41, 253, 519
BssECI CCNNGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 555
Bst6I CTCTTC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 3 cut(s) 125, 573, 611
BstENI CCTNNNNNAGG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 3 cut(s) 12, 681, 703
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 2 cut(s) 230, 588
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 3 cut(s) 194, 305, 339
BtsI GCAGTG 3 cut(s) 9, 135, 573
BtsIMutI CAGTG 4 cut(s) 9, 135, 551, 573
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 618
CseI GACGC 1 cut(s) 593
Csp6I GTAC 2 cut(s) 94, 370
CviAII CATG 2 cut(s) 196, 674
CviQI GTAC 2 cut(s) 94, 370
DdeI CTNAG 3 cut(s) 125, 573, 611
DraIII CACNNNGTG 1 cut(s) 555
EaeI YGGCCR 2 cut(s) 192, 303
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco147I AGGCCT 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 600
Eco88I CYCGRG 2 cut(s) 99, 657
EcoNI CCTNNNNNAGG 1 cut(s) 177
FaeI CATG 2 cut(s) 199, 677
FaqI GGGAC 1 cut(s) 178
FatI CATG 2 cut(s) 195, 673
FauI CCCGC 1 cut(s) 609
FauNDI CATATG 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 80, 87
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 3 cut(s) 194, 305, 339
HapII CCGG 3 cut(s) 360, 395, 593
HgaI GACGC 1 cut(s) 593
Hin1II CATG 2 cut(s) 199, 677
HinfI GANTC 2 cut(s) 389, 693
HpaII CCGG 3 cut(s) 360, 395, 593
HphI GGTGA 2 cut(s) 455, 529
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 101, 202, 593
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 555
HpyCH4V TGCA 8 cut(s) 14, 52, 140, 170, 179, 218, 458, 705
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 3 cut(s) 125, 573, 611
Hsp92II CATG 2 cut(s) 199, 677
Kpn2I TCCGGA 1 cut(s) 592
LmnI GCTCC 3 cut(s) 4, 121, 607
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 2 cut(s) 166, 457
MaeI CTAG 2 cut(s) 80, 87
MboII GAAGA 4 cut(s) 235, 251, 532, 593
MfeI CAATTG 2 cut(s) 228, 624
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 2 cut(s) 194, 305
MluCI AATT 4 cut(s) 62, 228, 490, 624
MluNI TGGCCA 2 cut(s) 194, 305
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 9 cut(s) 52, 108, 120, 350, 433, 495, 554, 606, 666
Mox20I TGGCCA 2 cut(s) 194, 305
MroI TCCGGA 1 cut(s) 592
MscI TGGCCA 2 cut(s) 194, 305
MseI TTAA 1 cut(s) 633
Msp20I TGGCCA 2 cut(s) 194, 305
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 3 cut(s) 360, 395, 593
MspR9I CCNGG 1 cut(s) 395
MunI CAATTG 2 cut(s) 228, 624
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 1 cut(s) 395
NdeI CATATG 1 cut(s) 328
NlaIII CATG 2 cut(s) 199, 677
PaeR7I CTCGAG 2 cut(s) 99, 657
PceI AGGCCT 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 389, 693
PkrI GCNGC 1 cut(s) 51
PspXI VCTCGAGB 1 cut(s) 657
PstI CTGCAG 2 cut(s) 16, 707
RsaI GTAC 2 cut(s) 95, 371
RsaNI GTAC 2 cut(s) 94, 370
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 126, 175, 184, 189, 612
SfaNI GCATC 2 cut(s) 166, 457
SfcI CTRYAG 3 cut(s) 12, 681, 703
Sfr274I CTCGAG 2 cut(s) 99, 657
SlaI CTCGAG 2 cut(s) 99, 657
SmlI CTYRAG 3 cut(s) 99, 116, 657
SmoI CTYRAG 3 cut(s) 99, 116, 657
SpeI ACTAGT 1 cut(s) 86
Sse9I AATT 4 cut(s) 62, 228, 490, 624
SseBI AGGCCT 1 cut(s) 339
SsiI CCGC 2 cut(s) 616, 648
SspMI CTAG 2 cut(s) 80, 87
StuI AGGCCT 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 555
TaqI TCGA 6 cut(s) 100, 378, 387, 450, 465, 658
TasI AATT 4 cut(s) 62, 228, 490, 624
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 2 cut(s) 389, 693
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 4 cut(s) 16, 142, 558, 573
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 345, 524
TspRI CASTG 4 cut(s) 16, 142, 558, 573
XagI CCTNNNNNAGG 1 cut(s) 177
XhoI CTCGAG 2 cut(s) 99, 657
XspI CTAG 2 cut(s) 80, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.