Rorug02G0106500

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000432
Physical Location & Seq
Reverse (-)
9105779 .. 9106600
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0106500.1

Sequence Viewer

Length: 321 bp
ATGGATAATGATGTCACGATGAAGATTATGACATTCTCTCAACAAGGATCTCATGCTATTTGCATACTTTCTGCAAATGGTACCATATCAAATGTCACACTTCGACAACCCAGTACTTCTAGAGGTACTTTTAACATACGAGGTACGACCTTCCGTCCTTTGCAAGGCCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCAACTGAGAATGAAGGAACAAAGAGCAGGTCAGGTGGCATGAGCGTCTCTTTGGCAGGTTCAGATGGTAGAGTTGTTGGACTGGCTGGTCTATTGATAGCTCCAGGACCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

106

Amino Acids

11.11

Weight (kDa)

9.77

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 3 - 95 6e-16 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
Acc36I ACCTGC 2 cut(s) 222, 251
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 80
AclWI GGATC 2 cut(s) 55, 202
AfaI GTAC 4 cut(s) 82, 115, 127, 145
AfiI CCNNNNNNNGG 1 cut(s) 164
AhdI GACNNNNNGTC 1 cut(s) 153
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 2 cut(s) 55, 202
AlwNI CAGNNNCTG 1 cut(s) 314
AoxI GGCC 1 cut(s) 166
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
Asp718I GGTACC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 311
AvaII GGWCC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 80
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 120
BfuAI ACCTGC 2 cut(s) 222, 251
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 311
BmeRI GACNNNNNGTC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 111, 291
BseBI CCWGG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 111, 291
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 47, 194
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 82
BspMI ACCTGC 2 cut(s) 222, 251
BspPI GGATC 2 cut(s) 55, 202
BspT107I GGYRCC 1 cut(s) 80
BsrI ACTGG 2 cut(s) 111, 291
BssMI GATC 2 cut(s) 47, 194
Bst2UI CCWGG 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 210
BstENI CCTNNNNNAGG 1 cut(s) 162
BstKTI GATC 2 cut(s) 50, 197
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 47, 194
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 1 cut(s) 168
BveI ACCTGC 2 cut(s) 222, 251
CaiI CAGNNNCTG 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 1 cut(s) 238
Csp6I GTAC 4 cut(s) 81, 114, 126, 144
CviAII CATG 2 cut(s) 53, 244
CviJI RGCY 3 cut(s) 168, 290, 305
CviKI_1 RGCY 3 cut(s) 168, 290, 305
CviQI GTAC 4 cut(s) 81, 114, 126, 144
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 49, 196
DpnII GATC 2 cut(s) 47, 194
DrdI GACNNNNNNGTC 1 cut(s) 291
DriI GACNNNNNGTC 1 cut(s) 153
DseDI GACNNNNNNGTC 1 cut(s) 291
Eam1105I GACNNNNNGTC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 311
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 307
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 2 cut(s) 56, 247
FaiI YATR 9 cut(s) 29, 54, 65, 86, 137, 199, 201, 203, 245
FatI CATG 2 cut(s) 52, 243
FspBI CTAG 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 168
HgaI GACGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 56, 247
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 16, 120, 192
HpyAV CCTTC 2 cut(s) 160, 212
HpyCH4V TGCA 3 cut(s) 63, 74, 163
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 2 cut(s) 56, 247
KpnI GGTACC 1 cut(s) 84
Kzo9I GATC 2 cut(s) 47, 194
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 8 cut(s) 124, 177, 217, 222, 246, 272, 276, 294
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 13, 94
MalI GATC 2 cut(s) 49, 196
MboI GATC 2 cut(s) 47, 194
MboII GAAGA 1 cut(s) 34
MflI RGATCY 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 2 cut(s) 116, 134
MseI TTAA 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
NdeII GATC 2 cut(s) 47, 194
NlaIII CATG 2 cut(s) 56, 247
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 13, 94
PfoI TCCNGGA 1 cut(s) 307
PpuMI RGGWCCY 1 cut(s) 311
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 311
PspPPI RGGWCCY 1 cut(s) 311
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 4 cut(s) 82, 115, 127, 145
RsaNI GTAC 4 cut(s) 81, 114, 126, 144
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 2 cut(s) 47, 194
Sau96I GGNCC 1 cut(s) 311
ScaI AGTACT 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 309
SetI ASST 8 cut(s) 127, 145, 152, 236, 241, 265, 307, 316
SinI GGWCC 1 cut(s) 311
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 307
TaqI TCGA 1 cut(s) 103
TatI WGTACW 1 cut(s) 113
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 2 cut(s) 13, 94
Tsp45I GTSAC 2 cut(s) 13, 94
TspDTI ATGAA 3 cut(s) 35, 174, 231
TspGWI ACGGA 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 311
XagI CCTNNNNNAGG 1 cut(s) 162
XbaI TCTAGA 1 cut(s) 119
XspI CTAG 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.