Rmu_sc0001793.1_g000037

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001793.1
OG0000432
Physical Location & Seq
Forward (+)
163815 .. 166285
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001793.1_g000037.1.cds

Sequence Viewer

Length: 912 bp
atgttgtggtctgcagccagagaaggaagggagtttcgactttgcttatttgttgatgcagacaagaacaactactggaattaccgcaagaggctaatgaaactagttatggtgagtgggatgccagcagaggacttccaaagggggcggactagttcaaaactcacagctctccagattctaaaccccgagacaatggagtacactggaaacaaaaagattctgcctaatccagtcttgctgcaagatgaggaattatataagtatctactagatactagtgtgtacccgagagaaccagagccactcaaggagctgaggcaagctactgcaaaactccccaatgcttgctttggtacttcacctgatgcaggtcagttaatggccatgctcttgaaacttgggaatgcaaaaaagacaattgaagttggagtttttactggctactctcttctccttaccgctctcgcaattcctcatgatggcaagatcatggccatagatagagatcgcacaacatacgaaataggcctcccaatcatacaaaaagctggagtggaacacaaaatcgactacattgaatcaccagctctgcctgttcttgacaatctcttgggggagccaaagaatgaggctgattttgactttgcgtttgttgacgctgataaaggaaattattggaattatcatgagaggctgatgaagttggtgaagattggagggattgttgtatatgataacacgctgtggggagggacagtggctaagcctgaagaggttgttccagaaaacaaaagggagttgaggcgtcatgcggttgagtttaacaagttagtttcggctgaccctcgagttgaaatatctcatgcttctataggtgatgggatcatcatctgcagacgcatttgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

303

Amino Acids

34.27

Weight (kDa)

6.55

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 362
AccBSI CCGCTC 1 cut(s) 464
AciI CCGC 4 cut(s) 85, 148, 462, 815
AclWI GGATC 1 cut(s) 893
AcoI YGGCCR 2 cut(s) 384, 495
AcuI CTGAAG 1 cut(s) 792
AcyI GRCGYC 1 cut(s) 808
AdeI CACNNNGTG 1 cut(s) 747
AfaI GTAC 3 cut(s) 203, 287, 358
AfiI CCNNNNNNNGG 2 cut(s) 371, 482
AgsI TTSAA 5 cut(s) 159, 397, 425, 581, 857
AhlI ACTAGT 3 cut(s) 103, 152, 278
AluBI AGCT 5 cut(s) 170, 316, 326, 551, 590
AluI AGCT 5 cut(s) 170, 316, 326, 551, 590
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 893
Ama87I CYCGRG 3 cut(s) 188, 289, 849
AoxI GGCC 3 cut(s) 384, 495, 529
ApeKI GCWGC 2 cut(s) 14, 241
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
AsuHPI GGTGA 5 cut(s) 124, 354, 576, 721, 890
AvaI CYCGRG 3 cut(s) 188, 289, 849
BaeI ACNNNNGTAYC 2 cut(s) 267, 300
BalI TGGCCA 2 cut(s) 386, 497
BbvCI CCTCAGC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 26, 228
BccI CCATC 2 cut(s) 476, 875
BcoDI GTCTC 1 cut(s) 185
BcuI ACTAGT 3 cut(s) 103, 152, 278
BfaI CTAG 5 cut(s) 104, 153, 272, 279, 910
BfmI CTRYAG 3 cut(s) 12, 873, 895
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 2 cut(s) 15, 242
BlpI GCTNAGC 1 cut(s) 765
BlsI GCNGC 2 cut(s) 16, 243
BmeT110I CYCGRG 3 cut(s) 188, 289, 849
BmiI GGNNCC 1 cut(s) 621
BmsI GCATC 3 cut(s) 46, 111, 358
BpmI CTGGAG 2 cut(s) 158, 573
Bpu10I CCTNAGC 1 cut(s) 317
Bpu1102I GCTNAGC 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 293
BsaBI GATNNNNATC 2 cut(s) 507, 890
BsaHI GRCGYC 1 cut(s) 808
BsaXI ACNNNNNCTCC 4 cut(s) 711, 741, 744, 774
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 482
Bse1I ACTGG 4 cut(s) 80, 211, 233, 445
Bse8I GATNNNNATC 2 cut(s) 507, 890
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 2 cut(s) 507, 890
BseLI CCNNNNNNNGG 2 cut(s) 371, 482
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 4 cut(s) 80, 211, 233, 445
BseXI GCAGC 2 cut(s) 26, 228
BshFI GGCC 3 cut(s) 386, 497, 531
BsiHKCI CYCGRG 3 cut(s) 188, 289, 849
BslFI GGGAC 1 cut(s) 769
BslI CCNNNNNNNGG 2 cut(s) 371, 482
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 769
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 3 cut(s) 386, 497, 531
BsoBI CYCGRG 3 cut(s) 188, 289, 849
Bsp143I GATC 3 cut(s) 489, 508, 885
Bsp1720I GCTNAGC 1 cut(s) 765
BspACI CCGC 4 cut(s) 85, 148, 462, 815
BspANI GGCC 3 cut(s) 386, 497, 531
BspCNI CTCAG 1 cut(s) 309
BspHI TCATGA 2 cut(s) 478, 688
BspLI GGNNCC 1 cut(s) 621
BspMAI CTGCAG 2 cut(s) 16, 899
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 1 cut(s) 893
BsrBI CCGCTC 1 cut(s) 464
BsrI ACTGG 4 cut(s) 80, 211, 233, 445
BssMI GATC 3 cut(s) 489, 508, 885
BssNI GRCGYC 1 cut(s) 808
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 2 cut(s) 456, 768
BstACI GRCGYC 1 cut(s) 808
BstC8I GCNNGC 3 cut(s) 126, 324, 349
BstDEI CTNAG 2 cut(s) 317, 765
BstENI CCTNNNNNAGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 3 cut(s) 492, 511, 888
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 3 cut(s) 489, 508, 885
BstSFI CTRYAG 3 cut(s) 12, 873, 895
BstV1I GCAGC 2 cut(s) 26, 228
BsuRI GGCC 3 cut(s) 386, 497, 531
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 204, 765
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 126, 324, 349
CciI TCATGA 2 cut(s) 478, 688
CseI GACGC 2 cut(s) 668, 797
Csp6I GTAC 3 cut(s) 202, 286, 357
CviAII CATG 6 cut(s) 388, 479, 493, 689, 812, 866
CviQI GTAC 3 cut(s) 202, 286, 357
DdeI CTNAG 2 cut(s) 317, 765
DpnI GATC 3 cut(s) 491, 510, 887
DpnII GATC 3 cut(s) 489, 508, 885
DraIII CACNNNGTG 1 cut(s) 747
EaeI YGGCCR 2 cut(s) 384, 495
Eam1104I CTCTTC 2 cut(s) 456, 768
EarI CTCTTC 2 cut(s) 456, 768
EciI GGCGGA 1 cut(s) 163
Eco147I AGGCCT 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 792
Eco88I CYCGRG 3 cut(s) 188, 289, 849
EcoNI CCTNNNNNAGG 1 cut(s) 369
FaeI CATG 6 cut(s) 391, 482, 496, 692, 815, 869
FaqI GGGAC 1 cut(s) 769
FatI CATG 6 cut(s) 387, 478, 492, 688, 811, 865
Fnu4HI GCNGC 2 cut(s) 15, 242
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 15, 242
FspBI CTAG 5 cut(s) 104, 153, 272, 279, 910
GluI GCNGC 2 cut(s) 15, 242
GsuI CTGGAG 2 cut(s) 158, 573
HaeIII GGCC 3 cut(s) 386, 497, 531
HgaI GACGC 2 cut(s) 668, 797
Hin1I GRCGYC 1 cut(s) 808
Hin1II CATG 6 cut(s) 391, 482, 496, 692, 815, 869
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 3 cut(s) 178, 220, 581
HphI GGTGA 5 cut(s) 124, 354, 576, 721, 890
Hpy166II GTNNAC 3 cut(s) 204, 286, 658
Hpy188III TCNNGA 6 cut(s) 175, 394, 479, 602, 689, 785
Hpy8I GTNNAC 3 cut(s) 204, 286, 658
HpyAV CCTTC 2 cut(s) 17, 21
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4V TGCA 7 cut(s) 14, 59, 244, 332, 371, 410, 897
HpyF3I CTNAG 2 cut(s) 317, 765
Hsp92I GRCGYC 1 cut(s) 808
Hsp92II CATG 6 cut(s) 391, 482, 496, 692, 815, 869
Kzo9I GATC 3 cut(s) 489, 508, 885
LmnI GCTCC 2 cut(s) 313, 619
Lsp1109I GCAGC 2 cut(s) 26, 228
LweI GCATC 3 cut(s) 46, 111, 358
MaeI CTAG 5 cut(s) 104, 153, 272, 279, 910
MalI GATC 3 cut(s) 491, 510, 887
MbiI CCGCTC 1 cut(s) 464
MboI GATC 3 cut(s) 489, 508, 885
MboII GAAGA 3 cut(s) 443, 724, 785
MfeI CAATTG 1 cut(s) 420
MlsI TGGCCA 2 cut(s) 386, 497
MluCI AATT 6 cut(s) 79, 254, 420, 471, 673, 682
MluNI TGGCCA 2 cut(s) 386, 497
MmeI TCCRAC 1 cut(s) 409
Mox20I TGGCCA 2 cut(s) 386, 497
MscI TGGCCA 2 cut(s) 386, 497
MseI TTAA 2 cut(s) 380, 825
Msp20I TGGCCA 2 cut(s) 386, 497
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 412
NdeII GATC 3 cut(s) 489, 508, 885
NlaIII CATG 6 cut(s) 391, 482, 496, 692, 815, 869
NlaIV GGNNCC 1 cut(s) 621
PaeR7I CTCGAG 1 cut(s) 849
PagI TCATGA 2 cut(s) 478, 688
PceI AGGCCT 1 cut(s) 531
PctI GAATGC 1 cut(s) 412
PfeI GAWTC 3 cut(s) 178, 220, 581
PkrI GCNGC 2 cut(s) 16, 243
PspN4I GGNNCC 1 cut(s) 621
PspXI VCTCGAGB 1 cut(s) 849
PstI CTGCAG 2 cut(s) 16, 899
RsaI GTAC 3 cut(s) 203, 287, 358
RsaNI GTAC 3 cut(s) 202, 286, 357
SaqAI TTAA 2 cut(s) 380, 825
SatI GCNGC 2 cut(s) 15, 242
Sau3AI GATC 3 cut(s) 489, 508, 885
SetI ASST 9 cut(s) 172, 318, 328, 367, 376, 553, 592, 780, 880
SfaNI GCATC 3 cut(s) 46, 111, 358
SfcI CTRYAG 3 cut(s) 12, 873, 895
Sfr274I CTCGAG 1 cut(s) 849
SlaI CTCGAG 1 cut(s) 849
SmlI CTYRAG 2 cut(s) 308, 849
SmoI CTYRAG 2 cut(s) 308, 849
SpeI ACTAGT 3 cut(s) 103, 152, 278
Sse9I AATT 6 cut(s) 79, 254, 420, 471, 673, 682
SseBI AGGCCT 1 cut(s) 531
SsiI CCGC 4 cut(s) 85, 148, 462, 815
SspMI CTAG 5 cut(s) 104, 153, 272, 279, 910
StuI AGGCCT 1 cut(s) 531
TaaI ACNGT 1 cut(s) 760
TaqI TCGA 3 cut(s) 37, 570, 850
TasI AATT 6 cut(s) 79, 254, 420, 471, 673, 682
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 3 cut(s) 178, 220, 581
Tru1I TTAA 2 cut(s) 380, 825
Tru9I TTAA 2 cut(s) 380, 825
TscAI CASTG 2 cut(s) 211, 765
TseI GCWGC 2 cut(s) 14, 241
TspDTI ATGAA 2 cut(s) 113, 716
TspRI CASTG 2 cut(s) 211, 765
XagI CCTNNNNNAGG 1 cut(s) 369
XhoI CTCGAG 1 cut(s) 849
XspI CTAG 5 cut(s) 104, 153, 272, 279, 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.