Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Forward (+)

17486739 .. 17488329

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1083900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCAGGCAATGGAGAGGAGCAACAAACTCAGGCAGGGAGGCACCAAGAGGTTGGCCACAAGAGCCTTCTCCAAAGTGATGCTCTTTACCAGTATATATTGGAGACAAGTGTGTACCCAAGGGAGCCTGAATCCATGAAGGAGCTCAGAGAAGTGACTGCAAAGCATCCATGGAACATCATGACCACATCAGCTGATGAAGGGCAATTCTTGAACATGCTTCTCAAGTTGATCAATGCCAAAAACACCATGGAAATTGGAGTTTACACCGGCTACTCCCTCCTAGCCACCGCCCTTGCCATTCCTGATGATGGAAAGATCTTGGCCATGGACATAAACAAGGAAAACTATGAATTGGGTCTTCCGATCATCGAAAAGGCCGGTGTTGCCCACAAGATCGACTTCAGAGAAGGCCCGGCCCTCCCGGTGCTCGACCTATTGGTCGAAGATAAGAAGAATCATGGGTCATTCGATTTCATCTTCGTGGATGCTGACAAAGACAACTACATCAACTACCACAAGAGGCTGATTGATTTGGTGAAGGTTGGGGGTTTGATCGGCTACGACAACACCCTATGGAATGGCTCTGTGGTCGCACCCCCTGATGCCCCACTGCGCAAGTACGTCAGGTACTACAGGGACTTCGTCCTCGAGCTCAACAAGGCACTCGCTGCTGATCCTAGGATCGAGATCTGCATGCTTCCCGTCGGTGATGGCATCACTCTCTGCCGTCGAATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019748 GO:0032259 GO:0042221 GO:0042409 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

248

Amino Acids

27.78

Weight (kDa)

5.43

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	35 - 246	4.1e-98	O-methyltransferase
Methyltransf_24	PF13578	84 - 190	2.8e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	440
Acc16I	TGCGCA	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	671, 692
AcoI	YGGCCR	2 cut(s)	55, 324
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	3 cut(s)	116, 623, 632
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	3 cut(s)	145, 194, 655
AluI	AGCT	3 cut(s)	145, 194, 655
Alw21I	GWGCWC	3 cut(s)	147, 432, 657
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	671, 692
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	5 cut(s)	55, 324, 378, 412, 417
ApeKI	GCWGC	1 cut(s)	671
AspA2I	CCTAGG	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	2 cut(s)	413, 418
AsuC2I	CCSGG	2 cut(s)	416, 425
AsuHPI	GGTGA	2 cut(s)	550, 722
AvaI	CYCGRG	1 cut(s)	650
AvrII	CCTAGG	1 cut(s)	680
BalI	TGGCCA	2 cut(s)	57, 326
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	2 cut(s)	147, 657
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	3 cut(s)	147, 432, 657
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	2 cut(s)	305, 707
BceAI	ACGGC	1 cut(s)	714
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	2 cut(s)	416, 425
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	284, 681
BfmI	CTRYAG	1 cut(s)	634
BglII	AGATCT	2 cut(s)	318, 690
BisI	GCNGC	1 cut(s)	672
BlnI	CCTAGG	1 cut(s)	680
BlsI	GCNGC	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	416, 425
BmeT110I	CYCGRG	1 cut(s)	650
BmgT120I	GGNCC	2 cut(s)	413, 418
BmiI	GGNNCC	2 cut(s)	44, 126
BmrFI	CCNGG	2 cut(s)	416, 425
BmsI	GCATC	5 cut(s)	70, 175, 478, 595, 726
BpiI	GAAGAC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	2 cut(s)	416, 425
BsaBI	GATNNNNATC	1 cut(s)	689
BsaJI	CCNNGG	5 cut(s)	119, 170, 249, 327, 680
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse118I	RCCGGY	2 cut(s)	269, 380
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	16
Bse8I	GATNNNNATC	1 cut(s)	689
BseDI	CCNNGG	5 cut(s)	119, 170, 249, 327, 680
BseGI	GGATG	2 cut(s)	166, 493
BseJI	GATNNNNATC	1 cut(s)	689
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	44, 160
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	658
BshFI	GGCC	5 cut(s)	57, 326, 380, 414, 419
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	3 cut(s)	147, 432, 657
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	4 cut(s)	270, 381, 416, 425
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	5 cut(s)	57, 326, 380, 414, 419
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	3 cut(s)	147, 432, 657
Bsp143I	GATC	8 cut(s)	231, 318, 366, 396, 555, 676, 684, 690
Bsp19I	CCATGG	3 cut(s)	170, 249, 327
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	5 cut(s)	57, 326, 380, 414, 419
BspCNI	CTCAG	2 cut(s)	43, 159
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	44, 126
BspPI	GGATC	2 cut(s)	671, 692
BspT107I	GGYRCC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	16
BsrFI	RCCGGY	2 cut(s)	269, 380
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	2 cut(s)	269, 380
BssECI	CCNNGG	5 cut(s)	119, 170, 249, 327, 680
BssMI	GATC	8 cut(s)	231, 318, 366, 396, 555, 676, 684, 690
BssT1I	CCWWGG	5 cut(s)	119, 170, 249, 327, 680
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	7, 698
BstDEI	CTNAG	2 cut(s)	30, 146
BstDSI	CCRYGG	3 cut(s)	170, 249, 327
BstF5I	GGATG	2 cut(s)	166, 493
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	8 cut(s)	234, 321, 369, 399, 558, 679, 687, 693
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	8 cut(s)	231, 318, 366, 396, 555, 676, 684, 690
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 386, 671
BstNSI	RCATGY	2 cut(s)	220, 700
BstSCI	CCNGG	2 cut(s)	414, 423
BstSFI	CTRYAG	1 cut(s)	634
BstV1I	GCAGC	1 cut(s)	658
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	2 cut(s)	318, 690
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	2 cut(s)	318, 690
BsuRI	GGCC	5 cut(s)	57, 326, 380, 414, 419
BtgI	CCRYGG	3 cut(s)	170, 249, 327
BtsCI	GGATG	2 cut(s)	166, 493
BtsI	GCAGTG	1 cut(s)	611
BtsIMutI	CAGTG	1 cut(s)	611
Cac8I	GCNNGC	2 cut(s)	7, 698
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	618
Cfr10I	RCCGGY	2 cut(s)	269, 380
Cfr13I	GGNCC	2 cut(s)	413, 418
Csp6I	GTAC	3 cut(s)	115, 622, 631
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	8 cut(s)	136, 171, 181, 217, 250, 328, 461, 697
CviQI	GTAC	3 cut(s)	115, 622, 631
DdeI	CTNAG	2 cut(s)	30, 146
DpnI	GATC	8 cut(s)	233, 320, 368, 398, 557, 678, 686, 692
DpnII	GATC	8 cut(s)	231, 318, 366, 396, 555, 676, 684, 690
DrdI	GACNNNNNNGTC	1 cut(s)	440
DseDI	GACNNNNNNGTC	1 cut(s)	440
EaeI	YGGCCR	2 cut(s)	55, 324
Ecl136II	GAGCTC	2 cut(s)	145, 655
Eco130I	CCWWGG	5 cut(s)	119, 170, 249, 327, 680
Eco24I	GRGCYC	2 cut(s)	147, 657
Eco53kI	GAGCTC	2 cut(s)	145, 655
Eco57I	CTGAAG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	650
EcoICRI	GAGCTC	2 cut(s)	145, 655
EcoT14I	CCWWGG	5 cut(s)	119, 170, 249, 327, 680
EcoT38I	GRGCYC	2 cut(s)	147, 657
ErhI	CCWWGG	5 cut(s)	119, 170, 249, 327, 680
FaeI	CATG	8 cut(s)	139, 174, 184, 220, 253, 331, 464, 700
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	8 cut(s)	135, 170, 180, 216, 249, 327, 460, 696
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	672
FokI	GGATG	2 cut(s)	153, 500
FriOI	GRGCYC	2 cut(s)	147, 657
Fsp4HI	GCNGC	1 cut(s)	672
FspBI	CTAG	2 cut(s)	284, 681
FspI	TGCGCA	1 cut(s)	617
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	1 cut(s)	672
HaeIII	GGCC	5 cut(s)	57, 326, 380, 414, 419
HapII	CCGG	4 cut(s)	270, 381, 416, 425
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	8 cut(s)	139, 174, 184, 220, 253, 331, 464, 700
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HinfI	GANTC	3 cut(s)	131, 457, 735
HpaII	CCGG	4 cut(s)	270, 381, 416, 425
HphI	GGTGA	2 cut(s)	550, 722
Hpy166II	GTNNAC	2 cut(s)	115, 265
Hpy188I	TCNGA	3 cut(s)	149, 366, 407
Hpy188III	TCNNGA	4 cut(s)	181, 211, 305, 688
Hpy8I	GTNNAC	2 cut(s)	115, 265
Hpy99I	CGWCG	2 cut(s)	710, 735
HpyAV	CCTTC	5 cut(s)	77, 133, 194, 404, 535
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	2 cut(s)	161, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 386, 671
HpyF3I	CTNAG	2 cut(s)	30, 146
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	8 cut(s)	139, 174, 184, 220, 253, 331, 464, 700
HspAI	GCGC	1 cut(s)	616
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	8 cut(s)	231, 318, 366, 396, 555, 676, 684, 690
LmnI	GCTCC	3 cut(s)	19, 124, 142
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	5 cut(s)	70, 175, 478, 595, 726
MaeI	CTAG	2 cut(s)	284, 681
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	8 cut(s)	233, 320, 368, 398, 557, 678, 686, 692
MboI	GATC	8 cut(s)	231, 318, 366, 396, 555, 676, 684, 690
MboII	GAAGA	4 cut(s)	353, 458, 466, 472
MflI	RGATCY	2 cut(s)	318, 690
MhlI	GDGCHC	3 cut(s)	147, 432, 657
MlsI	TGGCCA	2 cut(s)	57, 326
MluCI	AATT	3 cut(s)	206, 255, 353
MluNI	TGGCCA	2 cut(s)	57, 326
MnlI	CCTC	7 cut(s)	10, 33, 43, 290, 431, 516, 659
Mox20I	TGGCCA	2 cut(s)	57, 326
MscI	TGGCCA	2 cut(s)	57, 326
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	2 cut(s)	57, 326
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	4 cut(s)	270, 381, 416, 425
MspR9I	CCNGG	2 cut(s)	416, 425
MwoI	GCNNNNNNNGC	3 cut(s)	63, 386, 671
NciI	CCSGG	2 cut(s)	416, 425
NcoI	CCATGG	3 cut(s)	170, 249, 327
NdeII	GATC	8 cut(s)	231, 318, 366, 396, 555, 676, 684, 690
NlaIII	CATG	8 cut(s)	139, 174, 184, 220, 253, 331, 464, 700
NlaIV	GGNNCC	2 cut(s)	44, 126
NmuCI	GTSAC	1 cut(s)	154
NsbI	TGCGCA	1 cut(s)	617
NspI	RCATGY	2 cut(s)	220, 700
PaeI	GCATGC	1 cut(s)	700
PaeR7I	CTCGAG	1 cut(s)	650
PagI	TCATGA	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	131, 457, 735
PflFI	GACNNNGTC	1 cut(s)	644
PkrI	GCNGC	1 cut(s)	673
Psp124BI	GAGCTC	2 cut(s)	147, 657
PspN4I	GGNNCC	2 cut(s)	44, 126
PspPI	GGNCC	2 cut(s)	413, 418
PspXI	VCTCGAGB	1 cut(s)	650
PsuI	RGATCY	2 cut(s)	318, 690
PsyI	GACNNNGTC	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	3 cut(s)	116, 623, 632
RsaNI	GTAC	3 cut(s)	115, 622, 631
RseI	CAYNNNNRTG	1 cut(s)	482
SacI	GAGCTC	2 cut(s)	147, 657
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	8 cut(s)	231, 318, 366, 396, 555, 676, 684, 690
Sau96I	GGNCC	2 cut(s)	413, 418
ScrFI	CCNGG	2 cut(s)	416, 425
SduI	GDGCHC	3 cut(s)	147, 432, 657
SetI	ASST	8 cut(s)	54, 147, 196, 438, 546, 627, 632, 657
SfaNI	GCATC	5 cut(s)	70, 175, 478, 595, 726
SfcI	CTRYAG	1 cut(s)	634
Sfr274I	CTCGAG	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	2 cut(s)	224, 650
SmoI	CTYRAG	2 cut(s)	224, 650
SphI	GCATGC	1 cut(s)	700
Sse9I	AATT	3 cut(s)	206, 255, 353
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	2 cut(s)	284, 681
SstI	GAGCTC	2 cut(s)	147, 657
StyD4I	CCNGG	2 cut(s)	414, 423
StyI	CCWWGG	5 cut(s)	119, 170, 249, 327, 680
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	8 cut(s)	372, 399, 432, 444, 471, 651, 687, 733
TasI	AATT	3 cut(s)	206, 255, 353
TfiI	GAWTC	3 cut(s)	131, 457, 735
TscAI	CASTG	1 cut(s)	618
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	152, 213, 366, 466
TspRI	CASTG	1 cut(s)	618
Tth111I	GACNNNGTC	1 cut(s)	644
XceI	RCATGY	2 cut(s)	220, 700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	650
XmaJI	CCTAGG	1 cut(s)	680
XspI	CTAG	2 cut(s)	284, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.