Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

10273941 .. 10275304

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCCGCCAATGGAGAGGAGCAGCAAACTCAGGCAGGAAGGCACCAAGAGGTTGGCCACAAGAGCCTTCTCCAAAGTGATGCTCTTTATCAGTATATACTGGAGACAAGTGTGTACCCAAGGGAGCCTGAATCCATGAAGGAGCTCAGAGAAGTGACTGCAAAGCATCCATGGAATATCATGACCACATCAGCTGACGAAGGCCAATTCTTGAACATGCTTCTCAAGTTGATCAATGCCAAAAACACCATGGAGATTGGAGTCTACACTGGCTACTCCCTCCTTGCCACTGCCCTTGCCATTCCTGATGATGGAAAGATCTTGGCCATGGACATCAACAAAGAAAATTATGAATTGGGTCTTCCGATAATCGAAAAGGCTGGTGTTGCCCACAAGATCGACTTCAGAGAAGGCCCCGCCCTCCCAATGCTCGACTTATTGATCGAAGATAAGAAGAATCATGGGTCGTACGATTTCATATTCGTGGACGCAGACAAAGACAACTACATCAACTACCACAAGAGGCTGATTGATTTGGTCAAGGTTGGGGGTCTCATTGGCTACGACAACACCCTATGGAATGGGTCTGTGGTCGCGCCCCCTGATGCTCCACTCCGCAAGTACGTCAGGTACTACCGGGACTTCGTGCTCGAGCTCAACAAGGCACTCGCTGCTGACCCTAGGATCGAGATTTGCATGCTTCCTGTTGGTGATGGCATCACTCTCTGCCGTCGGATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019748 GO:0032259 GO:0042221 GO:0042409 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

248

Amino Acids

27.85

Weight (kDa)

5.43

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	1 cut(s)	596
AciI	CCGC	3 cut(s)	6, 417, 616
AclWI	GGATC	2 cut(s)	692, 743
AcoI	YGGCCR	3 cut(s)	3, 55, 324
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	4 cut(s)	116, 470, 623, 632
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	3 cut(s)	145, 194, 655
AluI	AGCT	3 cut(s)	145, 194, 655
Alw21I	GWGCWC	3 cut(s)	147, 651, 657
Alw26I	GTCTC	2 cut(s)	98, 557
AlwI	GGATC	2 cut(s)	692, 743
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	5 cut(s)	3, 55, 202, 324, 412
ApeKI	GCWGC	2 cut(s)	22, 671
AspA2I	CCTAGG	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	1 cut(s)	722
AvaI	CYCGRG	1 cut(s)	650
AvrII	CCTAGG	1 cut(s)	680
BalI	TGGCCA	2 cut(s)	57, 326
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	2 cut(s)	147, 657
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	3 cut(s)	147, 651, 657
BbvI	GCAGC	2 cut(s)	34, 658
BccI	CCATC	2 cut(s)	305, 707
BceAI	ACGGC	1 cut(s)	714
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	2 cut(s)	98, 557
BfaI	CTAG	1 cut(s)	681
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	3 cut(s)	6, 23, 672
BlnI	CCTAGG	1 cut(s)	680
BlsI	GCNGC	3 cut(s)	7, 24, 673
Bme1390I	CCNGG	1 cut(s)	638
BmeT110I	CYCGRG	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	3 cut(s)	44, 126, 415
BmrFI	CCNGG	1 cut(s)	638
BmsI	GCATC	4 cut(s)	70, 175, 595, 726
BpiI	GAAGAC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	638
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	5 cut(s)	119, 170, 249, 327, 680
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	2 cut(s)	105, 274
BseDI	CCNNGG	5 cut(s)	119, 170, 249, 327, 680
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	2 cut(s)	44, 160
BseNI	ACTGG	2 cut(s)	105, 274
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	34, 658
Bsh1236I	CGCG	1 cut(s)	596
BshFI	GGCC	5 cut(s)	5, 57, 204, 326, 414
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	3 cut(s)	147, 651, 657
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	1 cut(s)	637
BsiWI	CGTACG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	2 cut(s)	98, 557
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	5 cut(s)	5, 57, 204, 326, 414
Bso31I	GGTCTC	1 cut(s)	557
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	3 cut(s)	147, 651, 657
Bsp143I	GATC	6 cut(s)	231, 318, 396, 441, 684, 735
Bsp19I	CCATGG	3 cut(s)	170, 249, 327
BspACI	CCGC	3 cut(s)	6, 417, 616
BspANI	GGCC	5 cut(s)	5, 57, 204, 326, 414
BspCNI	CTCAG	2 cut(s)	43, 159
BspFNI	CGCG	1 cut(s)	596
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	44, 126, 415
BspPI	GGATC	2 cut(s)	692, 743
BspT107I	GGYRCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	105, 274
BssECI	CCNNGG	5 cut(s)	119, 170, 249, 327, 680
BssMI	GATC	6 cut(s)	231, 318, 396, 441, 684, 735
BssT1I	CCWWGG	5 cut(s)	119, 170, 249, 327, 680
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	2 cut(s)	30, 146
BstDSI	CCRYGG	3 cut(s)	170, 249, 327
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	6 cut(s)	234, 321, 399, 444, 687, 738
BstMAI	GTCTC	2 cut(s)	98, 557
BstMBI	GATC	6 cut(s)	231, 318, 396, 441, 684, 735
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 386, 671
BstNSI	RCATGY	2 cut(s)	220, 700
BstSCI	CCNGG	1 cut(s)	636
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	2 cut(s)	34, 658
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	318
BsuRI	GGCC	5 cut(s)	5, 57, 204, 326, 414
BtgI	CCRYGG	3 cut(s)	170, 249, 327
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	267, 288
Cac8I	GCNNGC	1 cut(s)	698
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	4 cut(s)	115, 469, 622, 631
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	8 cut(s)	136, 171, 181, 217, 250, 328, 461, 697
CviQI	GTAC	4 cut(s)	115, 469, 622, 631
DdeI	CTNAG	2 cut(s)	30, 146
DpnI	GATC	6 cut(s)	233, 320, 398, 443, 686, 737
DpnII	GATC	6 cut(s)	231, 318, 396, 441, 684, 735
EaeI	YGGCCR	3 cut(s)	3, 55, 324
Ecl136II	GAGCTC	2 cut(s)	145, 655
Eco130I	CCWWGG	5 cut(s)	119, 170, 249, 327, 680
Eco24I	GRGCYC	2 cut(s)	147, 657
Eco31I	GGTCTC	1 cut(s)	557
Eco53kI	GAGCTC	2 cut(s)	145, 655
Eco57I	CTGAAG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	650
EcoICRI	GAGCTC	2 cut(s)	145, 655
EcoO109I	RGGNCCY	1 cut(s)	413
EcoT14I	CCWWGG	5 cut(s)	119, 170, 249, 327, 680
EcoT38I	GRGCYC	2 cut(s)	147, 657
ErhI	CCWWGG	5 cut(s)	119, 170, 249, 327, 680
FaeI	CATG	8 cut(s)	139, 174, 184, 220, 253, 331, 464, 700
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	8 cut(s)	135, 170, 180, 216, 249, 327, 460, 696
FauI	CCCGC	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	6, 23, 672
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	2 cut(s)	147, 657
Fsp4HI	GCNGC	3 cut(s)	6, 23, 672
FspBI	CTAG	1 cut(s)	681
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	3 cut(s)	6, 23, 672
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	5 cut(s)	5, 57, 204, 326, 414
HapII	CCGG	1 cut(s)	637
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	8 cut(s)	139, 174, 184, 220, 253, 331, 464, 700
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HinfI	GANTC	3 cut(s)	131, 261, 457
HpaII	CCGG	1 cut(s)	637
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	3 cut(s)	115, 265, 487
Hpy188I	TCNGA	4 cut(s)	149, 366, 407, 735
Hpy188III	TCNNGA	4 cut(s)	181, 211, 305, 688
Hpy8I	GTNNAC	3 cut(s)	115, 265, 487
Hpy99I	CGWCG	1 cut(s)	735
HpyAV	CCTTC	5 cut(s)	33, 77, 133, 194, 404
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	2 cut(s)	161, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 386, 671
HpyF3I	CTNAG	2 cut(s)	30, 146
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	8 cut(s)	139, 174, 184, 220, 253, 331, 464, 700
HspAI	GCGC	1 cut(s)	596
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	6 cut(s)	231, 318, 396, 441, 684, 735
LmnI	GCTCC	4 cut(s)	19, 124, 142, 613
Lsp1109I	GCAGC	2 cut(s)	34, 658
LweI	GCATC	4 cut(s)	70, 175, 595, 726
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	6 cut(s)	233, 320, 398, 443, 686, 737
MboI	GATC	6 cut(s)	231, 318, 396, 441, 684, 735
MboII	GAAGA	3 cut(s)	353, 458, 466
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	3 cut(s)	147, 651, 657
MlsI	TGGCCA	2 cut(s)	57, 326
MluCI	AATT	3 cut(s)	206, 346, 353
MluNI	TGGCCA	2 cut(s)	57, 326
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	5 cut(s)	10, 43, 290, 431, 516
Mox20I	TGGCCA	2 cut(s)	57, 326
MscI	TGGCCA	2 cut(s)	57, 326
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	2 cut(s)	57, 326
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	637
MspR9I	CCNGG	1 cut(s)	638
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	3 cut(s)	63, 386, 671
NciI	CCSGG	1 cut(s)	638
NcoI	CCATGG	3 cut(s)	170, 249, 327
NdeII	GATC	6 cut(s)	231, 318, 396, 441, 684, 735
NlaIII	CATG	8 cut(s)	139, 174, 184, 220, 253, 331, 464, 700
NlaIV	GGNNCC	3 cut(s)	44, 126, 415
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	2 cut(s)	220, 700
PaeI	GCATGC	1 cut(s)	700
PaeR7I	CTCGAG	1 cut(s)	650
PagI	TCATGA	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	131, 457
Pfl23II	CGTACG	1 cut(s)	468
PkrI	GCNGC	3 cut(s)	7, 24, 673
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
Psp124BI	GAGCTC	2 cut(s)	147, 657
PspLI	CGTACG	1 cut(s)	468
PspN4I	GGNNCC	3 cut(s)	44, 126, 415
PspPI	GGNCC	1 cut(s)	413
PspXI	VCTCGAGB	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	4 cut(s)	116, 470, 623, 632
RsaNI	GTAC	4 cut(s)	115, 469, 622, 631
RseI	CAYNNNNRTG	1 cut(s)	482
SacI	GAGCTC	2 cut(s)	147, 657
SatI	GCNGC	3 cut(s)	6, 23, 672
Sau3AI	GATC	6 cut(s)	231, 318, 396, 441, 684, 735
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	638
SduI	GDGCHC	3 cut(s)	147, 651, 657
SetI	ASST	7 cut(s)	54, 147, 196, 546, 627, 632, 657
SfaNI	GCATC	4 cut(s)	70, 175, 595, 726
Sfr274I	CTCGAG	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	2 cut(s)	224, 650
SmoI	CTYRAG	2 cut(s)	224, 650
SphI	GCATGC	1 cut(s)	700
Sse9I	AATT	3 cut(s)	206, 346, 353
SsiI	CCGC	3 cut(s)	6, 417, 616
SspMI	CTAG	1 cut(s)	681
SstI	GAGCTC	2 cut(s)	147, 657
StyD4I	CCNGG	1 cut(s)	636
StyI	CCWWGG	5 cut(s)	119, 170, 249, 327, 680
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	6 cut(s)	372, 399, 432, 444, 651, 687
TasI	AATT	3 cut(s)	206, 346, 353
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	131, 457
TscAI	CASTG	2 cut(s)	274, 295
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	22, 671
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	152, 366, 466
TspRI	CASTG	2 cut(s)	274, 295
XceI	RCATGY	2 cut(s)	220, 700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	650
XmaJI	CCTAGG	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.