Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

75822911 .. 75827500

Gene Structure 4590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0565700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2886 bp

ATGTTGAAACCCAGAGTATTTCACAAATCACAGTCTCTCTTTCTTCAGAACAAGCCGTTCATCCATGGAAGTAGAGGCAGCAGAACTTCACTTTCCGTCTGGTCAATAAGTCCTTCATTCCCCAACAAACACAAAAACCTTCGAGTTGGATCTAGTAACAATTATAGCAACAACATAGAAGCCGTAAGTAGTACTAATAGTACCAGTAGCAGTAGCAGCAGTACTAGTAATACTAGCACCCCTGGACCGATGACCACGACAACGATAACCTCTACCACTACCACTGAGGTGATGGAAGTGGTGACGGAGAATGAAGATGCAGCGCTCGAGAAAGAAGTAGAAGTAGTGATCACCAAAGAAGTAGTGAAGGAGAAGTTCATCAGTGTTAAAGCAACCATAACGGTGACGCTTACAGTTGGTGGGTTTCTGTCTCACATGGGTTTAGCTCGAGGACTAGATGATTTAAAAGATTTGCTTGGTCAAACGCTATTCATGGAGCTTCTTAGCGCTCACCTTGATCCCAAAACTGGATTAGAGAAGGAGCCAGTAACAGGGTTCGCACACCGAAGTCGCCGAGTGGAGGGTGAGATTATATACGAGACAGATTTTAAAGTTCCATTAGACTTTGGAGAAGCGGGAGCCGTTTTAATAGAGAATGAGCACCACAAAGAGATGTATCTCAAGGATATTGTCCTGGATGGGTTGCCTAATAGCCCTGTACTCCTTAGCTGTAATTCATGGCTTCACTCCAAGTATGACAATCCAGCCAAGAGGGTCTTCTTCACTAACAAGTCATATTTGCCATCTCAAACTCCAAGTGCATTGGTGAGGCTAAGAGAAGAGGAGCTTGTGACATTGCGCGGCAATGGCCAAGGAGAGCGCAAGAGCTTTGAGAGAATATACGATTACGATGTTTACAATGATCTTGGGAATCCTGATTCGAGTCTAAAGCTTATAAGAACGGTTCTTGGAGGAAGCAAAGAATTCCCCTATCCCAGGCGATGTCGAACTGGGCGACCAATGAGTGAAGTAGAAAAATATTCGGAGAAAAGGAGCAACAAGGTGTACGTTCCTAGAGACGAAGCCTTCTCAGAGGTGAAGCAGTTAACATTTTCAGCAAAGACAATGTACGCTGTCATGCGTGCAGTAGTACCGTCCTTGGAGAAAGCCATCAATGACACTAATCTTGGATTCACATTGTTCACGTCAATAGACTCACTTTACAATGAAGGCATTAAGTTGCCTTCAATTCCTTCAATTAAGGAACAGGGGGTTCTCCAAGCGATACTTCCCAGACTAGTAAATGTTTTGGCTTCTGGAGGTGATGTTTTGCGATTCGTGCCCCCAGAAACAATGAATAGAGACAAATTCTGCTGGTTCAGGGACGAGGAATTCGCTAGGCAGACTCTTGCCGGTCTCAACCCATATAGCATTAAGTTGGTGACGGAATGGCCATTGAAGAGTGAATTGGATCCCAACGTGTATGGTCCCCCAGAATCGGCAATCACCTCGGAAATGATTGAGCGAGAAATTAAAGGCTTTGCGACCATCAAAGAGGCCGTAAGAGAAAAGAAGTTGTTCATACTAGATTACCATGATTTGTTTTTACCATACGTGAGCAAAGTACGAGAGATTGAAGGCACAACACTATATGGATCGAGGACATTGTTCTTCCTTACCCCAGAAGGCACCCTAAGGCCGCTGGCCATTGAGTTGACTCGACCGCCAATGGATGGGAAGCCTCAGTGGAAGCAAGCCTTCCAACCCAGCTGGAATGCTACCGGTGTCTGGCTTTGGAGGATTGCCAAAGCTCATGTCCTTGCTCATGACTCTGGTTACCATCAACTTGTTAGTCACTGGCTAAGAACGCATTGTGCAACAGAACCATATATAATCGCAACCAATCGTCAACTGAGTGTGTTGCACCCAATCTACAAATTGTTGCATCCCCATTTCAGATACACTATGGAGATCAATGCTCTTGCTCGTGAATCACTAATAAATGCCGGTGGCATCATTGAAACCTCATTCTCACCTGGAAAATACTCCATGGAGCTTTGCTCTATTGCATATGCTAAGGAGTGGCGATTCGACCAAGAGGCTCTTCCTGCTGACCTTATTCTCAGGGGCATGGCTGTTGAGGACCCAACTGCTCCCCACGGTCTGAGGCTAACAATTCAAGACTACCCTTTCGCCAATGATGGACTCCTCCTATGGGATGCCATTAAACAATGGGTCTCTGACTATGTAAATCACTACTACACAGACTCCACCCTTGTACAAACTGATCAAGAGCTCAAAGCATGGTGGACAGAGATCAGAACAGTAGGTCACGGAGACAAGAAGGACGAACCCTGGTGGCCTGACCTGAATACCCCTCAAGACCTCATCAACATCCTCACAACAATGCTTTGGGTTACATCCGGTCACCATGCAGCAGTCAACTTTGGTCAGTATGCCTATGCAGGCTACTTCCCTAATTGTCCAACCATTGCAAGGACCAATGTGCCCACGGAGGACCCTGACGATGAGGTTTGGGAAATGTTCATGAGAAAACCCGAAGCTGCTCTTTTGCGGTGCTTTCCTTCGCAAATTCAAGCCACAACAGTGATGGCGGTTTTAGACATTTTGTCTAGTCATTCGCCGGACGAGGAGTACATTGGAGAGAAGATGGAGGACGCGTGGGCTGAAGACGAAGTTATAAGGGCGGCGTTTGAGCGGTTTAAGGGGAGGCTGATGATGCTTGAACAAACCATTGATGAGAGAAATGCTAATTTTGAGCTGAAGAACAGAAATGGAGCTGGGGTTGTGCCTTATGAGCTTTTGAAGCCCTTTTCAGAACCTGGGGTTACCGGGAAGGGTGTTCCATATAGCATCTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019748 GO:0032259 GO:0042221 GO:0042409 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

961

Amino Acids

108.68

Weight (kDa)

5.82

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	199 - 261	2.7e-07	PLAT/LH2 domain
Lipoxygenase	PF00305	275 - 944	0.0	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	956, 2702
AccB1I	GGYRCC	1 cut(s)	1688
AccB7I	CCANNNNNTGG	1 cut(s)	1733
AccBSI	CCGCTC	1 cut(s)	2719
AccII	CGCG	2 cut(s)	861, 2681
AciI	CCGC	8 cut(s)	635, 861, 1700, 1724, 2575, 2615, 2708, 2719
AclWI	GGATC	5 cut(s)	157, 512, 1466, 1479, 1663
AcoI	YGGCCR	3 cut(s)	868, 1451, 1704
AcsI	RAATTY	4 cut(s)	983, 1367, 1391, 2592
AcuI	CTGAAG	3 cut(s)	29, 2709, 2804
AfeI	AGCGCT	2 cut(s)	324, 508
AfiI	CCNNNNNNNGG	9 cut(s)	527, 551, 580, 996, 1498, 1733, 1788, 2215, 2496
AflIII	ACRYGT	2 cut(s)	1479, 2679
AgeI	ACCGGT	1 cut(s)	1781
AhdI	GACNNNNNGTC	1 cut(s)	2629
AhlI	ACTAGT	2 cut(s)	224, 1297
AjiI	CACGTC	1 cut(s)	1206
AjnI	CCWGG	6 cut(s)	241, 693, 995, 2035, 2354, 2842
AjuI	GAANNNNNNNTTGG	8 cut(s)	761, 793, 1272, 1304, 1451, 1483, 2088, 2120
AleI	CACNNNNGTG	2 cut(s)	287, 2606
Alw21I	GWGCWC	2 cut(s)	663, 2298
Alw26I	GTCTC	8 cut(s)	39, 435, 593, 1071, 1356, 1421, 2242, 2331
AlwI	GGATC	5 cut(s)	157, 512, 1466, 1479, 1663
AlwNI	CAGNNNCTG	1 cut(s)	2843
Ama87I	CYCGRG	2 cut(s)	326, 447
Aor51HI	AGCGCT	2 cut(s)	324, 508
AoxI	GGCC	6 cut(s)	868, 1451, 1557, 1697, 1704, 2360
ApeKI	GCWGC	5 cut(s)	78, 216, 320, 2435, 2564
ApoI	RAATTY	4 cut(s)	983, 1367, 1391, 2592
ArsI	GACNNNNNNTTYG	6 cut(s)	1376, 1408, 1800, 1832, 2174, 2206
AsiGI	ACCGGT	1 cut(s)	1781
Asp700I	GAANNNNTTC	1 cut(s)	1577
AspLEI	GCGC	4 cut(s)	325, 509, 861, 882
AspS9I	GGNCC	5 cut(s)	245, 1487, 2143, 2499, 2518
AsuC2I	CCSGG	1 cut(s)	2854
AvaI	CYCGRG	2 cut(s)	326, 447
AvaII	GGWCC	5 cut(s)	245, 1487, 2143, 2499, 2518
AxyI	CCTNAGG	1 cut(s)	1694
BaeGI	GKGCMC	2 cut(s)	1344, 2511
BalI	TGGCCA	3 cut(s)	870, 1453, 1706
BamHI	GGATCC	1 cut(s)	1471
BanI	GGYRCC	1 cut(s)	1688
BanII	GRGCYC	1 cut(s)	2298
BauI	CACGAG	1 cut(s)	1986
BbsI	GAAGAC	2 cut(s)	769, 2697
Bbv12I	GWGCWC	2 cut(s)	663, 2298
BbvI	GCAGC	5 cut(s)	90, 228, 332, 2447, 2551
BceAI	ACGGC	4 cut(s)	40, 167, 626, 1544
BcgI	CGANNNNNNTGC	2 cut(s)	1491, 1525
BciT130I	CCWGG	6 cut(s)	243, 695, 997, 2037, 2356, 2844
BclI	TGATCA	2 cut(s)	348, 2287
BcnI	CCSGG	1 cut(s)	2854
BcoDI	GTCTC	8 cut(s)	39, 435, 593, 1071, 1356, 1421, 2242, 2331
BcuI	ACTAGT	2 cut(s)	224, 1297
BfaI	CTAG	9 cut(s)	153, 225, 234, 455, 1074, 1298, 1398, 1586, 2634
BfoI	RGCGCY	2 cut(s)	326, 510
BisI	GCNGC	8 cut(s)	79, 217, 321, 862, 1700, 2436, 2565, 2709
BlsI	GCNGC	8 cut(s)	80, 218, 322, 863, 1701, 2437, 2566, 2710
BmcAI	AGTACT	2 cut(s)	193, 223
Bme1390I	CCNGG	7 cut(s)	243, 695, 997, 2037, 2356, 2844, 2854
Bme18I	GGWCC	5 cut(s)	245, 1487, 2143, 2499, 2518
BmeRI	GACNNNNNGTC	1 cut(s)	2629
BmeT110I	CYCGRG	2 cut(s)	326, 447
BmgBI	CACGTC	1 cut(s)	1206
BmgT120I	GGNCC	5 cut(s)	245, 1487, 2143, 2499, 2518
BmiI	GGNNCC	7 cut(s)	543, 640, 1473, 1489, 1690, 2145, 2520
BmrFI	CCNGG	7 cut(s)	243, 695, 997, 2037, 2356, 2844, 2854
BmrI	ACTGGG	1 cut(s)	1020
BmsI	GCATC	5 cut(s)	307, 1954, 2022, 2209, 2730
BmuI	ACTGGG	1 cut(s)	1020
BpiI	GAAGAC	2 cut(s)	769, 2697
BplI	GAGNNNNNCTC	2 cut(s)	2045, 2077
BpmI	CTGGAG	1 cut(s)	1338
Bpu10I	CCTNAGC	2 cut(s)	725, 2076
BpuEI	CTTGAG	2 cut(s)	665, 2364
BpuMI	CCSGG	1 cut(s)	2854
BsaAI	YACGTR	1 cut(s)	1615
BsaI	GGTCTC	2 cut(s)	1421, 2242
BsaWI	WCCGGW	2 cut(s)	1781, 2423
BsaXI	ACNNNNNCTCC	8 cut(s)	1311, 1341, 2252, 2282, 2666, 2696, 2790, 2820
Bsc4I	CCNNNNNNNGG	9 cut(s)	527, 551, 580, 996, 1498, 1733, 1788, 2215, 2496
Bse118I	RCCGGY	3 cut(s)	1412, 1781, 2006
Bse1I	ACTGG	5 cut(s)	204, 532, 545, 1015, 1862
Bse21I	CCTNAGG	1 cut(s)	1694
Bse3DI	GCAATG	3 cut(s)	854, 871, 2490
BseBI	CCWGG	6 cut(s)	243, 695, 997, 2037, 2356, 2844
BseGI	GGATG	7 cut(s)	60, 703, 1738, 1945, 2224, 2394, 2420
BseLI	CCNNNNNNNGG	9 cut(s)	527, 551, 580, 996, 1498, 1733, 1788, 2215, 2496
BseMI	GCAATG	3 cut(s)	854, 871, 2490
BseMII	CTCAG	6 cut(s)	276, 1104, 1757, 1904, 2137, 2156
BseNI	ACTGG	5 cut(s)	204, 532, 545, 1015, 1862
BseRI	GAGGAG	3 cut(s)	857, 2198, 2666
BseSI	GKGCMC	2 cut(s)	1344, 2511
BseXI	GCAGC	5 cut(s)	90, 228, 332, 2447, 2551
BseYI	CCCAGC	2 cut(s)	1766, 2801
BsgI	GTGCAG	1 cut(s)	1164
Bsh1236I	CGCG	2 cut(s)	861, 2681
Bsh1285I	CGRYCG	1 cut(s)	1724
BshFI	GGCC	6 cut(s)	870, 1453, 1559, 1699, 1706, 2362
BshNI	GGYRCC	1 cut(s)	1688
BshTI	ACCGGT	1 cut(s)	1781
BsiEI	CGRYCG	1 cut(s)	1724
BsiHKAI	GWGCWC	2 cut(s)	663, 2298
BsiHKCI	CYCGRG	2 cut(s)	326, 447
BsiSI	CCGG	6 cut(s)	1413, 1782, 2007, 2424, 2645, 2853
BslFI	GGGAC	2 cut(s)	1397, 1473
BslI	CCNNNNNNNGG	9 cut(s)	527, 551, 580, 996, 1498, 1733, 1788, 2215, 2496
BsmAI	GTCTC	8 cut(s)	39, 435, 593, 1071, 1356, 1421, 2242, 2331
BsmBI	CGTCTC	1 cut(s)	1071
BsmFI	GGGAC	2 cut(s)	1397, 1473
BsmI	GAATGC	1 cut(s)	1780
BsnI	GGCC	6 cut(s)	870, 1453, 1559, 1699, 1706, 2362
Bso31I	GGTCTC	2 cut(s)	1421, 2242
BsoBI	CYCGRG	2 cut(s)	326, 447
Bsp1286I	GDGCHC	4 cut(s)	663, 1344, 2298, 2511
Bsp1407I	TGTACA	1 cut(s)	2278
Bsp143I	GATC	9 cut(s)	149, 348, 517, 922, 1471, 1655, 1971, 2287, 2316
Bsp19I	CCATGG	2 cut(s)	64, 2049
BspACI	CCGC	8 cut(s)	635, 861, 1700, 1724, 2575, 2615, 2708, 2719
BspANI	GGCC	6 cut(s)	870, 1453, 1559, 1699, 1706, 2362
BspCNI	CTCAG	6 cut(s)	277, 1103, 1756, 1905, 2136, 2157
BspFNI	CGCG	2 cut(s)	861, 2681
BspHI	TCATGA	2 cut(s)	1825, 2547
BspLI	GGNNCC	7 cut(s)	543, 640, 1473, 1489, 1690, 2145, 2520
BspPI	GGATC	5 cut(s)	157, 512, 1466, 1479, 1663
BspQI	GCTCTTC	1 cut(s)	2109
BspT107I	GGYRCC	1 cut(s)	1688
BspTNI	GGTCTC	2 cut(s)	1421, 2242
BsrBI	CCGCTC	1 cut(s)	2719
BsrDI	GCAATG	3 cut(s)	854, 871, 2490
BsrFI	RCCGGY	3 cut(s)	1412, 1781, 2006
BsrGI	TGTACA	1 cut(s)	2278
BsrI	ACTGG	5 cut(s)	204, 532, 545, 1015, 1862
BssAI	RCCGGY	3 cut(s)	1412, 1781, 2006
BssMI	GATC	9 cut(s)	149, 348, 517, 922, 1471, 1655, 1971, 2287, 2316
BssSI	CACGAG	1 cut(s)	1986
BssT1I	CCWWGG	4 cut(s)	64, 871, 1158, 2049
Bst2BI	CACGAG	1 cut(s)	1986
Bst2UI	CCWGG	6 cut(s)	243, 695, 997, 2037, 2356, 2844
Bst4CI	ACNGT	8 cut(s)	33, 403, 415, 964, 1155, 2162, 2326, 2608
Bst6I	CTCTTC	3 cut(s)	834, 1454, 2109
BstAUI	TGTACA	1 cut(s)	2278
BstBAI	YACGTR	1 cut(s)	1615
BstC8I	GCNNGC	4 cut(s)	1143, 1704, 1755, 2467
BstDSI	CCRYGG	4 cut(s)	64, 2049, 2158, 2511
BstEII	GGTNACC	3 cut(s)	1835, 2426, 2848
BstENI	CCTNNNNNAGG	1 cut(s)	994
BstF5I	GGATG	7 cut(s)	60, 703, 1738, 1945, 2224, 2394, 2420
BstFNI	CGCG	2 cut(s)	861, 2681
BstH2I	RGCGCY	2 cut(s)	326, 510
BstHHI	GCGC	4 cut(s)	325, 509, 861, 882
BstKTI	GATC	9 cut(s)	152, 351, 520, 925, 1474, 1658, 1974, 2290, 2319
BstMAI	GTCTC	8 cut(s)	39, 435, 593, 1071, 1356, 1421, 2242, 2331
BstMBI	GATC	9 cut(s)	149, 348, 517, 922, 1471, 1655, 1971, 2287, 2316
BstMCI	CGRYCG	1 cut(s)	1724
BstMWI	GCNNNNNNNGC	8 cut(s)	216, 867, 1339, 1867, 2108, 2740, 2818, 2827
BstNI	CCWGG	6 cut(s)	243, 695, 997, 2037, 2356, 2844
BstPI	GGTNACC	3 cut(s)	1835, 2426, 2848
BstSCI	CCNGG	7 cut(s)	241, 693, 995, 2035, 2354, 2842, 2852
BstSLI	GKGCMC	2 cut(s)	1344, 2511
BstUI	CGCG	2 cut(s)	861, 2681
BstV1I	GCAGC	5 cut(s)	90, 228, 332, 2447, 2551
BstV2I	GAAGAC	2 cut(s)	769, 2697
BstX2I	RGATCY	2 cut(s)	149, 1471
BstYI	RGATCY	2 cut(s)	149, 1471
Bsu36I	CCTNAGG	1 cut(s)	1694
BsuRI	GGCC	6 cut(s)	870, 1453, 1559, 1699, 1706, 2362
BtgI	CCRYGG	4 cut(s)	64, 2049, 2158, 2511
BtgZI	GCGATG	1 cut(s)	1015
BtrI	CACGTC	1 cut(s)	1206
BtsCI	GGATG	7 cut(s)	60, 703, 1738, 1945, 2224, 2394, 2420
BtsIMutI	CAGTG	5 cut(s)	282, 388, 1751, 1855, 2613
Cac8I	GCNNGC	4 cut(s)	1143, 1704, 1755, 2467
CaiI	CAGNNNCTG	1 cut(s)	2843
CciI	TCATGA	2 cut(s)	1825, 2547
CfoI	GCGC	4 cut(s)	325, 509, 861, 882
Cfr10I	RCCGGY	3 cut(s)	1412, 1781, 2006
Cfr13I	GGNCC	5 cut(s)	245, 1487, 2143, 2499, 2518
CseI	GACGC	2 cut(s)	415, 2687
CspAI	ACCGGT	1 cut(s)	1781
DpnI	GATC	9 cut(s)	151, 350, 519, 924, 1473, 1657, 1973, 2289, 2318
DpnII	GATC	9 cut(s)	149, 348, 517, 922, 1471, 1655, 1971, 2287, 2316
DraI	TTTAAA	2 cut(s)	465, 610
DriI	GACNNNNNGTC	1 cut(s)	2629
EaeI	YGGCCR	3 cut(s)	868, 1451, 1704
Eam1104I	CTCTTC	3 cut(s)	834, 1454, 2109
Eam1105I	GACNNNNNGTC	1 cut(s)	2629
EarI	CTCTTC	3 cut(s)	834, 1454, 2109
Ecl136II	GAGCTC	1 cut(s)	2296
Eco130I	CCWWGG	4 cut(s)	64, 871, 1158, 2049
Eco24I	GRGCYC	1 cut(s)	2298
Eco31I	GGTCTC	2 cut(s)	1421, 2242
Eco47I	GGWCC	5 cut(s)	245, 1487, 2143, 2499, 2518
Eco47III	AGCGCT	2 cut(s)	324, 508
Eco53kI	GAGCTC	1 cut(s)	2296
Eco57I	CTGAAG	3 cut(s)	29, 2709, 2804
Eco81I	CCTNAGG	1 cut(s)	1694
Eco88I	CYCGRG	2 cut(s)	326, 447
Eco91I	GGTNACC	3 cut(s)	1835, 2426, 2848
EcoICRI	GAGCTC	1 cut(s)	2296
EcoNI	CCTNNNNNAGG	1 cut(s)	994
EcoO109I	RGGNCCY	2 cut(s)	2143, 2518
EcoO65I	GGTNACC	3 cut(s)	1835, 2426, 2848
EcoRI	GAATTC	2 cut(s)	983, 1391
EcoRII	CCWGG	6 cut(s)	241, 693, 995, 2035, 2354, 2842
EcoT14I	CCWWGG	4 cut(s)	64, 871, 1158, 2049
EcoT38I	GRGCYC	1 cut(s)	2298
ErhI	CCWWGG	4 cut(s)	64, 871, 1158, 2049
Esp3I	CGTCTC	1 cut(s)	1071
FaqI	GGGAC	2 cut(s)	1397, 1473
FauI	CCCGC	1 cut(s)	628
FauNDI	CATATG	1 cut(s)	2071
FbaI	TGATCA	2 cut(s)	348, 2287
Fnu4HI	GCNGC	8 cut(s)	79, 217, 321, 862, 1700, 2436, 2565, 2709
FokI	GGATG	7 cut(s)	47, 710, 1745, 1932, 2231, 2381, 2407
FriOI	GRGCYC	1 cut(s)	2298
Fsp4HI	GCNGC	8 cut(s)	79, 217, 321, 862, 1700, 2436, 2565, 2709
FspBI	CTAG	9 cut(s)	153, 225, 234, 455, 1074, 1298, 1398, 1586, 2634
GlaI	GCGC	4 cut(s)	324, 508, 860, 881
GluI	GCNGC	8 cut(s)	79, 217, 321, 862, 1700, 2436, 2565, 2709
GsaI	CCCAGC	2 cut(s)	1770, 2805
GsuI	CTGGAG	1 cut(s)	1338
HaeII	RGCGCY	2 cut(s)	326, 510
HaeIII	GGCC	6 cut(s)	870, 1453, 1559, 1699, 1706, 2362
HapII	CCGG	6 cut(s)	1413, 1782, 2007, 2424, 2645, 2853
HgaI	GACGC	2 cut(s)	415, 2687
HhaI	GCGC	4 cut(s)	325, 509, 861, 882
Hin6I	GCGC	4 cut(s)	323, 507, 859, 880
HinP1I	GCGC	4 cut(s)	323, 507, 859, 880
HincII	GTYRAC	4 cut(s)	1107, 1716, 1910, 2443
HindII	GTYRAC	4 cut(s)	1107, 1716, 1910, 2443
HindIII	AAGCTT	1 cut(s)	950
HpaI	GTTAAC	1 cut(s)	1107
HpaII	CCGG	6 cut(s)	1413, 1782, 2007, 2424, 2645, 2853
Hpy166II	GTNNAC	8 cut(s)	916, 1066, 1107, 1203, 1716, 1910, 2310, 2443
Hpy188I	TCNGA	9 cut(s)	48, 1045, 1093, 1513, 1958, 2166, 2242, 2321, 2839
Hpy188III	TCNNGA	9 cut(s)	328, 935, 1317, 1826, 1988, 2180, 2291, 2381, 2548
Hpy8I	GTNNAC	8 cut(s)	916, 1066, 1107, 1203, 1716, 1910, 2310, 2443
HpyCH4III	ACNGT	8 cut(s)	33, 403, 415, 964, 1155, 2162, 2326, 2608
HpyCH4IV	ACGT	4 cut(s)	1068, 1205, 1479, 1614
HpyF10VI	GCNNNNNNNGC	8 cut(s)	216, 867, 1339, 1867, 2108, 2740, 2818, 2827
HpySE526I	ACGT	4 cut(s)	1068, 1205, 1479, 1614
HspAI	GCGC	4 cut(s)	323, 507, 859, 880
Ksp22I	TGATCA	2 cut(s)	348, 2287
KspAI	GTTAAC	1 cut(s)	1107
Kzo9I	GATC	9 cut(s)	149, 348, 517, 922, 1471, 1655, 1971, 2287, 2316
LguI	GCTCTTC	1 cut(s)	2109
LmnI	GCTCC	8 cut(s)	496, 541, 638, 844, 1053, 2053, 2158, 2798
Lsp1109I	GCAGC	5 cut(s)	90, 228, 332, 2447, 2551
LweI	GCATC	5 cut(s)	307, 1954, 2022, 2209, 2730
MaeI	CTAG	9 cut(s)	153, 225, 234, 455, 1074, 1298, 1398, 1586, 2634
MaeII	ACGT	4 cut(s)	1068, 1205, 1479, 1614
MalI	GATC	9 cut(s)	151, 350, 519, 924, 1473, 1657, 1973, 2289, 2318
MbiI	CCGCTC	1 cut(s)	2719
MboI	GATC	9 cut(s)	149, 348, 517, 922, 1471, 1655, 1971, 2287, 2316
MflI	RGATCY	2 cut(s)	149, 1471
MhlI	GDGCHC	4 cut(s)	663, 1344, 2298, 2511
MlsI	TGGCCA	3 cut(s)	870, 1453, 1706
MluI	ACGCGT	1 cut(s)	2679
MluNI	TGGCCA	3 cut(s)	870, 1453, 1706
MlyI	GAGTC	7 cut(s)	952, 1208, 1399, 1711, 1823, 2199, 2261
MmeI	TCCRAC	3 cut(s)	127, 1786, 2510
Mox20I	TGGCCA	3 cut(s)	870, 1453, 1706
MroXI	GAANNNNTTC	1 cut(s)	1577
MscI	TGGCCA	3 cut(s)	870, 1453, 1706
MslI	CAYNNNNRTG	4 cut(s)	287, 401, 2405, 2606
Msp20I	TGGCCA	3 cut(s)	870, 1453, 1706
MspA1I	CMGCKG	2 cut(s)	1702, 1770
MspI	CCGG	6 cut(s)	1413, 1782, 2007, 2424, 2645, 2853
MspR9I	CCNGG	7 cut(s)	243, 695, 997, 2037, 2356, 2844, 2854
Mva1269I	GAATGC	1 cut(s)	1780
MvaI	CCWGG	6 cut(s)	243, 695, 997, 2037, 2356, 2844
MvnI	CGCG	2 cut(s)	861, 2681
MwoI	GCNNNNNNNGC	8 cut(s)	216, 867, 1339, 1867, 2108, 2740, 2818, 2827
NciI	CCSGG	1 cut(s)	2854
NcoI	CCATGG	2 cut(s)	64, 2049
NdeI	CATATG	1 cut(s)	2071
NdeII	GATC	9 cut(s)	149, 348, 517, 922, 1471, 1655, 1971, 2287, 2316
NlaIV	GGNNCC	7 cut(s)	543, 640, 1473, 1489, 1690, 2145, 2520
NmeAIII	GCCGAG	1 cut(s)	599
NmuCI	GTSAC	7 cut(s)	301, 403, 850, 1441, 1853, 2330, 2426
OliI	CACNNNNGTG	2 cut(s)	287, 2606
PaeR7I	CTCGAG	2 cut(s)	326, 447
PagI	TCATGA	2 cut(s)	1825, 2547
PciSI	GCTCTTC	1 cut(s)	2109
PcsI	WCGNNNNNNNCGW	1 cut(s)	1012
PctI	GAATGC	1 cut(s)	1780
PdmI	GAANNNNTTC	1 cut(s)	1577
PfeI	GAWTC	7 cut(s)	931, 938, 1191, 1335, 1496, 1991, 2088
PflMI	CCANNNNNTGG	1 cut(s)	1733
PfoI	TCCNGGA	1 cut(s)	693
PinAI	ACCGGT	1 cut(s)	1781
PkrI	GCNGC	8 cut(s)	80, 218, 322, 863, 1701, 2437, 2566, 2710
PleI	GAGTC	7 cut(s)	951, 1208, 1399, 1711, 1823, 2199, 2261
PpsI	GAGTC	7 cut(s)	951, 1208, 1399, 1711, 1823, 2199, 2261
Ppu21I	YACGTR	1 cut(s)	1615
PpuMI	RGGWCCY	2 cut(s)	2143, 2518
PsiI	TTATAA	2 cut(s)	956, 2702
Psp124BI	GAGCTC	1 cut(s)	2298
Psp5II	RGGWCCY	2 cut(s)	2143, 2518
Psp6I	CCWGG	6 cut(s)	241, 693, 995, 2035, 2354, 2842
PspEI	GGTNACC	3 cut(s)	1835, 2426, 2848
PspFI	CCCAGC	2 cut(s)	1766, 2801
PspGI	CCWGG	6 cut(s)	241, 693, 995, 2035, 2354, 2842
PspN4I	GGNNCC	7 cut(s)	543, 640, 1473, 1489, 1690, 2145, 2520
PspPI	GGNCC	5 cut(s)	245, 1487, 2143, 2499, 2518
PspPPI	RGGWCCY	2 cut(s)	2143, 2518
PspXI	VCTCGAGB	1 cut(s)	447
PstNI	CAGNNNCTG	1 cut(s)	2843
PsuI	RGATCY	2 cut(s)	149, 1471
PvuII	CAGCTG	1 cut(s)	1770
RseI	CAYNNNNRTG	4 cut(s)	287, 401, 2405, 2606
SacI	GAGCTC	1 cut(s)	2298
SapI	GCTCTTC	1 cut(s)	2109
SatI	GCNGC	8 cut(s)	79, 217, 321, 862, 1700, 2436, 2565, 2709
Sau3AI	GATC	9 cut(s)	149, 348, 517, 922, 1471, 1655, 1971, 2287, 2316
Sau96I	GGNCC	5 cut(s)	245, 1487, 2143, 2499, 2518
ScaI	AGTACT	2 cut(s)	193, 223
SchI	GAGTC	7 cut(s)	952, 1208, 1399, 1711, 1823, 2199, 2261
ScrFI	CCNGG	7 cut(s)	243, 695, 997, 2037, 2356, 2844, 2854
SduI	GDGCHC	4 cut(s)	663, 1344, 2298, 2511
SfaNI	GCATC	5 cut(s)	307, 1954, 2022, 2209, 2730
Sfr274I	CTCGAG	2 cut(s)	326, 447
SinI	GGWCC	5 cut(s)	245, 1487, 2143, 2499, 2518
SlaI	CTCGAG	2 cut(s)	326, 447
SmiMI	CAYNNNNRTG	4 cut(s)	287, 401, 2405, 2606
SmlI	CTYRAG	4 cut(s)	326, 447, 680, 2379
SmoI	CTYRAG	4 cut(s)	326, 447, 680, 2379
SpeI	ACTAGT	2 cut(s)	224, 1297
SsiI	CCGC	8 cut(s)	635, 861, 1700, 1724, 2575, 2615, 2708, 2719
SspI	AATATT	1 cut(s)	1040
SspMI	CTAG	9 cut(s)	153, 225, 234, 455, 1074, 1298, 1398, 1586, 2634
SstI	GAGCTC	1 cut(s)	2298
StyD4I	CCNGG	7 cut(s)	241, 693, 995, 2035, 2354, 2842, 2852
StyI	CCWWGG	4 cut(s)	64, 871, 1158, 2049
TaaI	ACNGT	8 cut(s)	33, 403, 415, 964, 1155, 2162, 2326, 2608
TaiI	ACGT	4 cut(s)	1071, 1208, 1482, 1617
TaqI	TCGA	8 cut(s)	142, 327, 448, 941, 1006, 1658, 1720, 2091
TaqII	GACCGA	1 cut(s)	262
TatI	WGTACW	5 cut(s)	191, 221, 718, 2278, 2655
TauI	GCSGC	3 cut(s)	864, 1702, 2711
TfiI	GAWTC	7 cut(s)	931, 938, 1191, 1335, 1496, 1991, 2088
TscAI	CASTG	5 cut(s)	289, 388, 1751, 1862, 2613
TseFI	GTSAC	7 cut(s)	301, 403, 850, 1441, 1853, 2330, 2426
TseI	GCWGC	5 cut(s)	78, 216, 320, 2435, 2564
Tsp45I	GTSAC	7 cut(s)	301, 403, 850, 1441, 1853, 2330, 2426
TspGWI	ACGGA	5 cut(s)	85, 320, 1460, 2349, 2528
TspRI	CASTG	5 cut(s)	289, 388, 1751, 1862, 2613
Van91I	CCANNNNNTGG	1 cut(s)	1733
VpaK11BI	GGWCC	5 cut(s)	245, 1487, 2143, 2499, 2518
XagI	CCTNNNNNAGG	1 cut(s)	994
XapI	RAATTY	4 cut(s)	983, 1367, 1391, 2592
XcmI	CCANNNNNNNNNTGG	2 cut(s)	289, 2608
XhoI	CTCGAG	2 cut(s)	326, 447
XmnI	GAANNNNTTC	1 cut(s)	1577
XspI	CTAG	9 cut(s)	153, 225, 234, 455, 1074, 1298, 1398, 1586, 2634
ZrmI	AGTACT	2 cut(s)	193, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.