Rroxscaffold_6G00413380

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000432
Physical Location & Seq
Reverse (-)
35746529 .. 35749269
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413380.1

Sequence Viewer

Length: 867 bp
ATGGATCAAACAGATGTTTTCTCCAAAGTTAAAGAAGGCAAATTGAATTTATCTGCAGCCAGAGAAGGAAGGGAGTTTCGACTTTGCTTATTTGTTGATGCAGACAAGAACAACTACTGGAATTACCGCAAGAGGCTAATGAAACTGGTTAAGGTCAGTGGGATGGTAATTTATGCTAACACACTGTGGGGAGGGACAGTTGCTTTGCCTGAAGAAGATTATATACTAGATACTAGTGTGTACCCAAGAGAACAAGAGCCACTCAAGGAGCTGAGGCAAGCTACTGCAAAACTCCCCAATGCTTGCTTTGGTACTTCACCTGATGCAGGTCAGTTAATGGCCATGCTCTTGAAACTTGGGAACGCAAAAAAGACAATTGAAGTTGGAGTTTTTACTGGCTACTCTCTTCTCCTTACCGCTCTCGCAATTCCTCATGATGGCAAGATCATGGCCATAGATAGAGATCGCACAACATACGAAATAGGCCTCCCAATCATACAAAAAGCTGGAGTGGAACACAAAATCGACTACATTGAATCCCCAGCTCTGCCTGTTCTTGACAATCTCTTGGGGGAGCCAAAGAATGAGGCCGATTTTGACTTTGCGTTTGTTGACGCTGATAAAGGAAATTATTGGAATTATCATGAGAGGCTGATGAAGCTGGTGAAGATTGGAGGGATTGTTGTATATGATAACACGCTGTGGGGAGGGACAGTGGCTAAGCCTGAAGAGGTTGTTCCAGAAAACAAAAGGGAGTTGAGGTGCCATGCGGTTGAGTTTAACAAGTTAGTTTCGGCTGACCCTCGTGTTGAAATATCTCATGCTTCTATAGGTGATGGGATCATCATCTGCAGACGCATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

288

Amino Acids

32.35

Weight (kDa)

6.03

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 25 - 72 7.5e-12 O-methyltransferase
Methyltransf_3 PF01596 78 - 287 8.1e-76 O-methyltransferase
Methyltransf_24 PF13578 126 - 232 3.4e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 762
AccBSI CCGCTC 1 cut(s) 419
AciI CCGC 3 cut(s) 127, 417, 770
AclWI GGATC 2 cut(s) 12, 848
AcoI YGGCCR 2 cut(s) 339, 450
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 2 cut(s) 231, 747
AdeI CACNNNGTG 2 cut(s) 186, 702
AfaI GTAC 2 cut(s) 242, 313
AfiI CCNNNNNNNGG 2 cut(s) 326, 437
AgsI TTSAA 5 cut(s) 46, 352, 380, 536, 812
AhlI ACTAGT 1 cut(s) 233
AluBI AGCT 5 cut(s) 271, 281, 506, 545, 661
AluI AGCT 5 cut(s) 271, 281, 506, 545, 661
AlwI GGATC 2 cut(s) 12, 848
AoxI GGCC 4 cut(s) 339, 450, 484, 588
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 46
ArsI GACNNNNNNTTYG 4 cut(s) 187, 219, 590, 622
AsuHPI GGTGA 3 cut(s) 309, 676, 845
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BalI TGGCCA 2 cut(s) 341, 452
BanI GGYRCC 1 cut(s) 762
BarI GAAGNNNNNNTAC 2 cut(s) 207, 239
BauI CACGAG 1 cut(s) 804
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 157, 431, 830
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 3 cut(s) 227, 234, 865
BfmI CTRYAG 3 cut(s) 54, 828, 850
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 1 cut(s) 57
BlpI GCTNAGC 1 cut(s) 720
BlsI GCNGC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 576, 764
BmsI GCATC 2 cut(s) 88, 313
BpmI CTGGAG 1 cut(s) 528
Bpu10I CCTNAGC 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 248
BsaBI GATNNNNATC 2 cut(s) 462, 845
BsaXI ACNNNNNCTCC 8 cut(s) 183, 213, 666, 696, 699, 729, 746, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 437
Bse1I ACTGG 3 cut(s) 122, 150, 400
Bse8I GATNNNNATC 2 cut(s) 462, 845
BseGI GGATG 1 cut(s) 168
BseJI GATNNNNATC 2 cut(s) 462, 845
BseLI CCNNNNNNNGG 2 cut(s) 326, 437
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 3 cut(s) 122, 150, 400
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 541
BshFI GGCC 4 cut(s) 341, 452, 486, 590
BshNI GGYRCC 1 cut(s) 762
BslFI GGGAC 2 cut(s) 208, 724
BslI CCNNNNNNNGG 2 cut(s) 326, 437
BsmFI GGGAC 2 cut(s) 208, 724
BsnI GGCC 4 cut(s) 341, 452, 486, 590
Bsp143I GATC 4 cut(s) 4, 444, 463, 840
Bsp1720I GCTNAGC 1 cut(s) 720
BspACI CCGC 3 cut(s) 127, 417, 770
BspANI GGCC 4 cut(s) 341, 452, 486, 590
BspCNI CTCAG 1 cut(s) 264
BspHI TCATGA 2 cut(s) 433, 643
BspLI GGNNCC 2 cut(s) 576, 764
BspMAI CTGCAG 2 cut(s) 58, 854
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 2 cut(s) 12, 848
BspT107I GGYRCC 1 cut(s) 762
BsrBI CCGCTC 1 cut(s) 419
BsrI ACTGG 3 cut(s) 122, 150, 400
BssMI GATC 4 cut(s) 4, 444, 463, 840
BssSI CACGAG 1 cut(s) 804
Bst2BI CACGAG 1 cut(s) 804
Bst4CI ACNGT 3 cut(s) 186, 199, 715
Bst6I CTCTTC 2 cut(s) 411, 723
BstC8I GCNNGC 2 cut(s) 279, 304
BstDEI CTNAG 2 cut(s) 272, 720
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 4 cut(s) 7, 447, 466, 843
BstMBI GATC 4 cut(s) 4, 444, 463, 840
BstMWI GCNNNNNNNGC 1 cut(s) 658
BstSFI CTRYAG 3 cut(s) 54, 828, 850
BstV1I GCAGC 1 cut(s) 68
BsuRI GGCC 4 cut(s) 341, 452, 486, 590
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 3 cut(s) 163, 182, 720
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 279, 304
CciI TCATGA 2 cut(s) 433, 643
CseI GACGC 1 cut(s) 623
Csp6I GTAC 2 cut(s) 241, 312
CviAII CATG 6 cut(s) 343, 434, 448, 644, 767, 821
CviQI GTAC 2 cut(s) 241, 312
DdeI CTNAG 2 cut(s) 272, 720
DpnI GATC 4 cut(s) 6, 446, 465, 842
DpnII GATC 4 cut(s) 4, 444, 463, 840
DraIII CACNNNGTG 2 cut(s) 186, 702
EaeI YGGCCR 2 cut(s) 339, 450
Eam1104I CTCTTC 2 cut(s) 411, 723
EarI CTCTTC 2 cut(s) 411, 723
Eco147I AGGCCT 1 cut(s) 486
Eco57I CTGAAG 2 cut(s) 231, 747
EcoNI CCTNNNNNAGG 1 cut(s) 324
FaeI CATG 6 cut(s) 346, 437, 451, 647, 770, 824
FaqI GGGAC 2 cut(s) 208, 724
FatI CATG 6 cut(s) 342, 433, 447, 643, 766, 820
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 3 cut(s) 227, 234, 865
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 545
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 4 cut(s) 341, 452, 486, 590
HgaI GACGC 1 cut(s) 623
Hin1II CATG 6 cut(s) 346, 437, 451, 647, 770, 824
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 1 cut(s) 536
HphI GGTGA 3 cut(s) 309, 676, 845
Hpy166II GTNNAC 2 cut(s) 241, 613
Hpy188III TCNNGA 5 cut(s) 349, 434, 557, 644, 740
Hpy8I GTNNAC 2 cut(s) 241, 613
HpyAV CCTTC 3 cut(s) 29, 59, 63
HpyCH4III ACNGT 3 cut(s) 186, 199, 715
HpyCH4V TGCA 5 cut(s) 56, 101, 287, 326, 852
HpyF10VI GCNNNNNNNGC 1 cut(s) 658
HpyF3I CTNAG 2 cut(s) 272, 720
Hsp92II CATG 6 cut(s) 346, 437, 451, 647, 770, 824
Kzo9I GATC 4 cut(s) 4, 444, 463, 840
LmnI GCTCC 2 cut(s) 268, 574
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 88, 313
MaeI CTAG 3 cut(s) 227, 234, 865
MalI GATC 4 cut(s) 6, 446, 465, 842
MbiI CCGCTC 1 cut(s) 419
MboI GATC 4 cut(s) 4, 444, 463, 840
MboII GAAGA 5 cut(s) 224, 227, 398, 679, 740
MfeI CAATTG 1 cut(s) 375
MlsI TGGCCA 2 cut(s) 341, 452
MluCI AATT 8 cut(s) 41, 46, 121, 168, 375, 426, 628, 637
MluNI TGGCCA 2 cut(s) 341, 452
MmeI TCCRAC 1 cut(s) 364
Mox20I TGGCCA 2 cut(s) 341, 452
MscI TGGCCA 2 cut(s) 341, 452
MseI TTAA 4 cut(s) 30, 150, 335, 780
Msp20I TGGCCA 2 cut(s) 341, 452
MunI CAATTG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 658
NdeII GATC 4 cut(s) 4, 444, 463, 840
NlaIII CATG 6 cut(s) 346, 437, 451, 647, 770, 824
NlaIV GGNNCC 2 cut(s) 576, 764
PagI TCATGA 2 cut(s) 433, 643
PceI AGGCCT 1 cut(s) 486
PfeI GAWTC 1 cut(s) 536
PkrI GCNGC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 541
PspN4I GGNNCC 2 cut(s) 576, 764
PstI CTGCAG 2 cut(s) 58, 854
RsaI GTAC 2 cut(s) 242, 313
RsaNI GTAC 2 cut(s) 241, 312
SaqAI TTAA 4 cut(s) 30, 150, 335, 780
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 4 cut(s) 4, 444, 463, 840
SfaNI GCATC 2 cut(s) 88, 313
SfcI CTRYAG 3 cut(s) 54, 828, 850
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 233
Sse9I AATT 8 cut(s) 41, 46, 121, 168, 375, 426, 628, 637
SseBI AGGCCT 1 cut(s) 486
SsiI CCGC 3 cut(s) 127, 417, 770
SspMI CTAG 3 cut(s) 227, 234, 865
StuI AGGCCT 1 cut(s) 486
TaaI ACNGT 3 cut(s) 186, 199, 715
TaqI TCGA 2 cut(s) 79, 525
TasI AATT 8 cut(s) 41, 46, 121, 168, 375, 426, 628, 637
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 4 cut(s) 30, 150, 335, 780
Tru9I TTAA 4 cut(s) 30, 150, 335, 780
TscAI CASTG 3 cut(s) 163, 189, 720
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 155, 671
TspRI CASTG 3 cut(s) 163, 189, 720
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 1 cut(s) 46
XspI CTAG 3 cut(s) 227, 234, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.