Rh2CG077300

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000432
Physical Location & Seq
Reverse (-)
6256927 .. 6258493
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG077300.1

Sequence Viewer

Length: 246 bp
ATGCAGGCGGTGGTGATTATGGCCATTGATAGTGATCGTAAAACATATGAAATAGCTAGGCCTCCCAATCATTCAAAAAGCCGGATCCCAAAGAATGTGGGTGATTTCGACTTTGCCTTTGTTGATGCTGACAAAGGTAACTATTGGAATTACCACGAGAGGTTGATAAAGCTGGTGAAGATTGGTGGCATTGTTATCTATGATAACACATTGTGGGGAGGAGCAGTAGTTCAGCAATCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

81

Amino Acids

9.15

Weight (kDa)

8.03

Isoelectric Point (pI)

22.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 31 - 79 3e-19 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AclWI GGATC 2 cut(s) 79, 92
AcoI YGGCCR 1 cut(s) 21
AdeI CACNNNGTG 1 cut(s) 213
AgsI TTSAA 1 cut(s) 75
AloI GAACNNNNNNTCC 2 cut(s) 213, 245
AluBI AGCT 2 cut(s) 56, 172
AluI AGCT 2 cut(s) 56, 172
AlwI GGATC 2 cut(s) 79, 92
AoxI GGCC 2 cut(s) 21, 59
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AsuHPI GGTGA 3 cut(s) 25, 113, 187
BalI TGGCCA 1 cut(s) 23
BamHI GGATCC 1 cut(s) 84
BauI CACGAG 1 cut(s) 155
BfaI CTAG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 86
BmsI GCATC 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 210, 213, 240, 243
Bse8I GATNNNNATC 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 234
BshFI GGCC 2 cut(s) 23, 61
BsiSI CCGG 1 cut(s) 82
BsnI GGCC 2 cut(s) 23, 61
Bsp143I GATC 2 cut(s) 34, 84
BspACI CCGC 1 cut(s) 8
BspANI GGCC 2 cut(s) 23, 61
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 2 cut(s) 79, 92
BssMI GATC 2 cut(s) 34, 84
BssSI CACGAG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 37, 87
BstMBI GATC 2 cut(s) 34, 84
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 2 cut(s) 23, 61
Cac8I GCNNGC 1 cut(s) 6
CspCI CAANNNNNGTGG 2 cut(s) 78, 113
CviJI RGCY 6 cut(s) 23, 56, 61, 81, 172, 242
CviKI_1 RGCY 6 cut(s) 23, 56, 61, 81, 172, 242
DpnI GATC 2 cut(s) 36, 86
DpnII GATC 2 cut(s) 34, 84
DraIII CACNNNGTG 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 61
FaiI YATR 4 cut(s) 20, 46, 48, 201
FauNDI CATATG 1 cut(s) 46
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 2 cut(s) 23, 61
HapII CCGG 1 cut(s) 82
HpaII CCGG 1 cut(s) 82
HphI GGTGA 3 cut(s) 25, 113, 187
HpyCH4V TGCA 1 cut(s) 4
Kzo9I GATC 2 cut(s) 34, 84
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 2 cut(s) 95, 158
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 137
MalI GATC 2 cut(s) 36, 86
MboI GATC 2 cut(s) 34, 84
MboII GAAGA 1 cut(s) 190
MflI RGATCY 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 23
MnlI CCTC 3 cut(s) 72, 153, 212
Mox20I TGGCCA 1 cut(s) 23
MscI TGGCCA 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 1 cut(s) 82
NdeI CATATG 1 cut(s) 46
NdeII GATC 2 cut(s) 34, 84
NlaIV GGNNCC 1 cut(s) 86
PceI AGGCCT 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 84
Sau3AI GATC 2 cut(s) 34, 84
SetI ASST 4 cut(s) 58, 139, 164, 174
SfaNI GCATC 1 cut(s) 115
SgeI CNNG 6 cut(s) 17, 69, 94, 167, 169, 185
Sse9I AATT 1 cut(s) 148
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 57
StuI AGGCCT 1 cut(s) 61
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 63
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.