Rh3DG160600

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000432
Physical Location & Seq
Forward (+)
13925155 .. 13927471
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG160600.1

Sequence Viewer

Length: 912 bp
ATGTTGTGGTCTGCAGCCAGAGAAGGAAGGGAGTTTCGACTTTGCTTATTTGTTGATGCAGACAAGAACAACTACTGGAATTACCGCAAGAGGCTAATGACACTGGTTAAGCCAGCAGAGGACTTCCAAAGGGGGTGGACTAGTTCAAAACTCAGCTCTCCAGATTCTAAACCCCGAGAAAGATTTGCAGGGACAATGGAGTACACTGGAAGCAAGAAGATTCTGCCTAATCCAGTCTTGCTGCAAGATGAGGAATTATATAAGTATCTACTAGATACTAGTGTGTACCCAAGAGAACCAGAGCCACTCAAGGAGCTGAGGCAAGCTACTGCAAAACTCCCCAATGCTTGCTTTGGTACTTCACCTGATGCAGGTCAGTTAATGGCCATGCTCTTGAAACTTGGGAATGCAAAAAAGACAATTGAAGTTGGAGTTTTTACTGGCTACTCTCTTCTCCTTACCGCTCTCGCAATTCCTCATGATGGCAAGATCATGGCCATAGATAGAGATCGCACAACATACGAAATAGGCCTCCCAATCATACAAAAAGCTGGAGTGGAACACAAAATCGACTACATTGAATCACCAGCTCTGCCTGTTCTTGACAATCTCTTGGGGGAGCCAAAGAATGAGGCTGATTTTGACTTTGCGTTTGTTGACGCTGATAAAGGAAATTATTGGAATTATCATGAGAGGCTGATGAAGTTGGTGAAGATTGGAGGGATTGTTGTATATGATAACACGCTGTGGGGAGGGACAGTGGCTAAGCCTGAAGAGGTTGTTCCAGAAAACAAAAGGGAGTTGAGGCGCCATGCGGTCGAGTTTAACAAGTTAGTTTCGGCTGACCCTCGTGTTGAAATATCTCATGCTTCTATAGGTGATGGGATCATCATCTGCAGACGCATTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

303

Amino Acids

34.31

Weight (kDa)

6.97

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 93 - 302 1e-75 O-methyltransferase
Methyltransf_24 PF13578 141 - 247 3.7e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 807
AccBSI CCGCTC 1 cut(s) 464
AciI CCGC 3 cut(s) 85, 462, 815
AclWI GGATC 1 cut(s) 893
AcoI YGGCCR 2 cut(s) 384, 495
AcuI CTGAAG 1 cut(s) 792
AcyI GRCGYC 1 cut(s) 808
AdeI CACNNNGTG 1 cut(s) 747
AfaI GTAC 3 cut(s) 203, 287, 358
AfiI CCNNNNNNNGG 2 cut(s) 371, 482
AgsI TTSAA 5 cut(s) 147, 397, 425, 581, 857
AhlI ACTAGT 2 cut(s) 140, 278
AluBI AGCT 5 cut(s) 156, 316, 326, 551, 590
AluI AGCT 5 cut(s) 156, 316, 326, 551, 590
AlwI GGATC 1 cut(s) 893
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 3 cut(s) 384, 495, 529
ApeKI GCWGC 2 cut(s) 14, 241
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
AspLEI GCGC 1 cut(s) 810
AsuHPI GGTGA 4 cut(s) 354, 576, 721, 890
AvaI CYCGRG 1 cut(s) 174
BaeI ACNNNNGTAYC 2 cut(s) 267, 300
BalI TGGCCA 2 cut(s) 386, 497
BanI GGYRCC 1 cut(s) 807
BauI CACGAG 1 cut(s) 849
BbvCI CCTCAGC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 26, 228
BccI CCATC 2 cut(s) 476, 875
BcuI ACTAGT 2 cut(s) 140, 278
BfaI CTAG 4 cut(s) 141, 272, 279, 910
BfmI CTRYAG 3 cut(s) 12, 873, 895
BfoI RGCGCY 1 cut(s) 811
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 2 cut(s) 15, 242
BlpI GCTNAGC 1 cut(s) 765
BlsI GCNGC 2 cut(s) 16, 243
BmeT110I CYCGRG 1 cut(s) 174
BmiI GGNNCC 2 cut(s) 621, 809
BmsI GCATC 2 cut(s) 46, 358
BpmI CTGGAG 2 cut(s) 144, 573
Bpu10I CCTNAGC 1 cut(s) 317
Bpu1102I GCTNAGC 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 293
BsaBI GATNNNNATC 2 cut(s) 507, 890
BsaHI GRCGYC 1 cut(s) 808
BsaXI ACNNNNNCTCC 4 cut(s) 711, 741, 744, 774
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 482
Bse1I ACTGG 5 cut(s) 80, 108, 211, 233, 445
Bse8I GATNNNNATC 2 cut(s) 507, 890
BseJI GATNNNNATC 2 cut(s) 507, 890
BseLI CCNNNNNNNGG 2 cut(s) 371, 482
BseMII CTCAG 2 cut(s) 166, 308
BseNI ACTGG 5 cut(s) 80, 108, 211, 233, 445
BseXI GCAGC 2 cut(s) 26, 228
Bsh1285I CGRYCG 1 cut(s) 819
BshFI GGCC 3 cut(s) 386, 497, 531
BshNI GGYRCC 1 cut(s) 807
BsiEI CGRYCG 1 cut(s) 819
BsiHKCI CYCGRG 1 cut(s) 174
BslFI GGGAC 2 cut(s) 205, 769
BslI CCNNNNNNNGG 2 cut(s) 371, 482
BsmFI GGGAC 2 cut(s) 205, 769
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 3 cut(s) 386, 497, 531
BsoBI CYCGRG 1 cut(s) 174
Bsp143I GATC 3 cut(s) 489, 508, 885
Bsp1720I GCTNAGC 1 cut(s) 765
BspACI CCGC 3 cut(s) 85, 462, 815
BspANI GGCC 3 cut(s) 386, 497, 531
BspCNI CTCAG 2 cut(s) 165, 309
BspHI TCATGA 2 cut(s) 478, 688
BspLI GGNNCC 2 cut(s) 621, 809
BspMAI CTGCAG 2 cut(s) 16, 899
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 1 cut(s) 893
BspT107I GGYRCC 1 cut(s) 807
BsrBI CCGCTC 1 cut(s) 464
BsrI ACTGG 5 cut(s) 80, 108, 211, 233, 445
BssMI GATC 3 cut(s) 489, 508, 885
BssNI GRCGYC 1 cut(s) 808
BssSI CACGAG 1 cut(s) 849
Bst2BI CACGAG 1 cut(s) 849
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 2 cut(s) 456, 768
BstACI GRCGYC 1 cut(s) 808
BstC8I GCNNGC 3 cut(s) 114, 324, 349
BstDEI CTNAG 3 cut(s) 152, 317, 765
BstENI CCTNNNNNAGG 1 cut(s) 369
BstH2I RGCGCY 1 cut(s) 811
BstHHI GCGC 1 cut(s) 810
BstKTI GATC 3 cut(s) 492, 511, 888
BstMBI GATC 3 cut(s) 489, 508, 885
BstMCI CGRYCG 1 cut(s) 819
BstSFI CTRYAG 3 cut(s) 12, 873, 895
BstV1I GCAGC 2 cut(s) 26, 228
BsuRI GGCC 3 cut(s) 386, 497, 531
BtsIMutI CAGTG 3 cut(s) 101, 204, 765
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 114, 324, 349
CciI TCATGA 2 cut(s) 478, 688
CfoI GCGC 1 cut(s) 810
CseI GACGC 1 cut(s) 668
Csp6I GTAC 3 cut(s) 202, 286, 357
CspCI CAANNNNNGTGG 2 cut(s) 116, 151
CviAII CATG 6 cut(s) 388, 479, 493, 689, 812, 866
CviQI GTAC 3 cut(s) 202, 286, 357
DdeI CTNAG 3 cut(s) 152, 317, 765
DinI GGCGCC 1 cut(s) 809
DpnI GATC 3 cut(s) 491, 510, 887
DpnII GATC 3 cut(s) 489, 508, 885
DraIII CACNNNGTG 1 cut(s) 747
EaeI YGGCCR 2 cut(s) 384, 495
Eam1104I CTCTTC 2 cut(s) 456, 768
EarI CTCTTC 2 cut(s) 456, 768
Eco147I AGGCCT 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 792
Eco88I CYCGRG 1 cut(s) 174
EcoNI CCTNNNNNAGG 1 cut(s) 369
EgeI GGCGCC 1 cut(s) 809
EheI GGCGCC 1 cut(s) 809
FaeI CATG 6 cut(s) 391, 482, 496, 692, 815, 869
FaqI GGGAC 2 cut(s) 205, 769
FatI CATG 6 cut(s) 387, 478, 492, 688, 811, 865
Fnu4HI GCNGC 2 cut(s) 15, 242
Fsp4HI GCNGC 2 cut(s) 15, 242
FspBI CTAG 4 cut(s) 141, 272, 279, 910
GlaI GCGC 1 cut(s) 809
GluI GCNGC 2 cut(s) 15, 242
GsuI CTGGAG 2 cut(s) 144, 573
HaeII RGCGCY 1 cut(s) 811
HaeIII GGCC 3 cut(s) 386, 497, 531
HgaI GACGC 1 cut(s) 668
HhaI GCGC 1 cut(s) 810
Hin1I GRCGYC 1 cut(s) 808
Hin1II CATG 6 cut(s) 391, 482, 496, 692, 815, 869
Hin6I GCGC 1 cut(s) 808
HinP1I GCGC 1 cut(s) 808
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 3 cut(s) 164, 220, 581
HphI GGTGA 4 cut(s) 354, 576, 721, 890
Hpy166II GTNNAC 4 cut(s) 138, 204, 286, 658
Hpy188III TCNNGA 6 cut(s) 161, 394, 479, 602, 689, 785
Hpy8I GTNNAC 4 cut(s) 138, 204, 286, 658
HpyAV CCTTC 2 cut(s) 17, 21
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4V TGCA 8 cut(s) 14, 59, 188, 244, 332, 371, 410, 897
HpyF3I CTNAG 3 cut(s) 152, 317, 765
Hsp92I GRCGYC 1 cut(s) 808
Hsp92II CATG 6 cut(s) 391, 482, 496, 692, 815, 869
HspAI GCGC 1 cut(s) 808
KasI GGCGCC 1 cut(s) 807
Kzo9I GATC 3 cut(s) 489, 508, 885
LmnI GCTCC 2 cut(s) 313, 619
Lsp1109I GCAGC 2 cut(s) 26, 228
LweI GCATC 2 cut(s) 46, 358
MaeI CTAG 4 cut(s) 141, 272, 279, 910
MalI GATC 3 cut(s) 491, 510, 887
MbiI CCGCTC 1 cut(s) 464
MboI GATC 3 cut(s) 489, 508, 885
MboII GAAGA 4 cut(s) 229, 443, 724, 785
MfeI CAATTG 1 cut(s) 420
MlsI TGGCCA 2 cut(s) 386, 497
MluCI AATT 6 cut(s) 79, 254, 420, 471, 673, 682
MluNI TGGCCA 2 cut(s) 386, 497
Mly113I GGCGCC 1 cut(s) 808
MmeI TCCRAC 1 cut(s) 409
Mox20I TGGCCA 2 cut(s) 386, 497
MscI TGGCCA 2 cut(s) 386, 497
MseI TTAA 3 cut(s) 108, 380, 825
Msp20I TGGCCA 2 cut(s) 386, 497
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 412
NarI GGCGCC 1 cut(s) 808
NdeII GATC 3 cut(s) 489, 508, 885
NlaIII CATG 6 cut(s) 391, 482, 496, 692, 815, 869
NlaIV GGNNCC 2 cut(s) 621, 809
PagI TCATGA 2 cut(s) 478, 688
PceI AGGCCT 1 cut(s) 531
PctI GAATGC 1 cut(s) 412
PfeI GAWTC 3 cut(s) 164, 220, 581
PkrI GCNGC 2 cut(s) 16, 243
PluTI GGCGCC 1 cut(s) 811
PspN4I GGNNCC 2 cut(s) 621, 809
PstI CTGCAG 2 cut(s) 16, 899
RsaI GTAC 3 cut(s) 203, 287, 358
RsaNI GTAC 3 cut(s) 202, 286, 357
SaqAI TTAA 3 cut(s) 108, 380, 825
SatI GCNGC 2 cut(s) 15, 242
Sau3AI GATC 3 cut(s) 489, 508, 885
SetI ASST 9 cut(s) 158, 318, 328, 367, 376, 553, 592, 780, 880
SfaNI GCATC 2 cut(s) 46, 358
SfcI CTRYAG 3 cut(s) 12, 873, 895
SfoI GGCGCC 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SpeI ACTAGT 2 cut(s) 140, 278
Sse9I AATT 6 cut(s) 79, 254, 420, 471, 673, 682
SseBI AGGCCT 1 cut(s) 531
SsiI CCGC 3 cut(s) 85, 462, 815
SspDI GGCGCC 1 cut(s) 807
SspMI CTAG 4 cut(s) 141, 272, 279, 910
StuI AGGCCT 1 cut(s) 531
TaaI ACNGT 1 cut(s) 760
TaqI TCGA 3 cut(s) 37, 570, 819
TasI AATT 6 cut(s) 79, 254, 420, 471, 673, 682
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 3 cut(s) 164, 220, 581
Tru1I TTAA 3 cut(s) 108, 380, 825
Tru9I TTAA 3 cut(s) 108, 380, 825
TscAI CASTG 3 cut(s) 108, 211, 765
TseI GCWGC 2 cut(s) 14, 241
TspDTI ATGAA 1 cut(s) 716
TspRI CASTG 3 cut(s) 108, 211, 765
XagI CCTNNNNNAGG 1 cut(s) 369
XspI CTAG 4 cut(s) 141, 272, 279, 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.