RchiOBHm_Chr2g0102321

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000432
Physical Location & Seq
Reverse (-)
13777883 .. 13778829
947 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47677

Sequence Viewer

Length: 666 bp
ATGAAGCCAATTGATGCTTATATACTAGAAACTAGTGTGTACCCTCGAGAACCAGAGCCACTCAAGGAGCTGAGGGAAGCCACTGCAGAACTCCCCAATGCTTTCTTTGGGACTGCACCTGATGCAGGTCAGCTAATGGCCATGCTCTTGAAACTTGTGAATGCAAAGAAGACAATCGAAGTTGGAGTTTTTACTGGATATTCTCTTCTGCTTACGGCTCTCACAATCCCTGACGACGGCAAGATTATGGCCATAGATAGAAATCGTAAGACATACGAAATAGGCCTCCCAATCATACAAAAAGCCGGAGTTGAGTACAAAATCGACTACATCGAATCCCCGGCTCTGCCTGTCCTTGACAATCTTTTGGGAGAACCAAAGAATGAAAGTGATTTCGACTTTGCATTTGTCGATGCTGACAAAGATAACTATTGGAATTATCATGAGAGGCTGATGAAACTGGTGAAGATTGGTGGGATTGTTATGTATGATAATACACTGTGGGGAGGGGCAGTGGCTAAACCTGAAGACGCTGTTCCGGAGACCAAAAGGGAGCTGAGGCGGGCTACAATTGAGTTTAACAAGTCAGTTTCGGCTGACCCACGAGTTGAAATCTCTCATGCTTCTGTAGGAGACGGAAACATCATTTGCAGACGCATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

221

Amino Acids

24.68

Weight (kDa)

5.04

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 10 - 220 1e-75 O-methyltransferase
Methyltransf_24 PF13578 59 - 165 1.3e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 116
AccIII TCCGGA 1 cut(s) 538
AciI CCGC 1 cut(s) 562
AcoI YGGCCR 2 cut(s) 138, 249
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 2 cut(s) 41, 317
AfiI CCNNNNNNNGG 2 cut(s) 125, 236
AgsI TTSAA 2 cut(s) 151, 611
AhlI ACTAGT 1 cut(s) 32
AluBI AGCT 3 cut(s) 70, 133, 556
AluI AGCT 3 cut(s) 70, 133, 556
Alw26I GTCTC 2 cut(s) 536, 627
Ama87I CYCGRG 1 cut(s) 45
Aor13HI TCCGGA 1 cut(s) 538
AoxI GGCC 3 cut(s) 138, 249, 283
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 475
AvaI CYCGRG 1 cut(s) 45
BalI TGGCCA 2 cut(s) 140, 251
BauI CACGAG 1 cut(s) 603
BbsI GAAGAC 2 cut(s) 176, 534
BbvCI CCTCAGC 2 cut(s) 71, 557
BceAI ACGGC 2 cut(s) 231, 253
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 536, 627
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 2 cut(s) 26, 33
BfmI CTRYAG 2 cut(s) 84, 627
BfuAI ACCTGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 341
BmeT110I CYCGRG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 4, 112, 403
BpiI GAAGAC 2 cut(s) 176, 534
Bpu10I CCTNAGC 2 cut(s) 71, 557
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 341
BsaBI GATNNNNATC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 538
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 236
Bse1I ACTGG 2 cut(s) 199, 465
Bse8I GATNNNNATC 1 cut(s) 261
BseAI TCCGGA 1 cut(s) 538
BseDI CCNNGG 1 cut(s) 339
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 125, 236
BseMII CTCAG 2 cut(s) 62, 548
BseNI ACTGG 2 cut(s) 199, 465
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 3 cut(s) 140, 251, 285
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 3 cut(s) 306, 341, 539
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 125, 236
BsmAI GTCTC 2 cut(s) 536, 627
BsmBI CGTCTC 1 cut(s) 627
BsmFI GGGAC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 3 cut(s) 140, 251, 285
Bso31I GGTCTC 1 cut(s) 536
BsoBI CYCGRG 1 cut(s) 45
Bsp13I TCCGGA 1 cut(s) 538
BspACI CCGC 1 cut(s) 562
BspANI GGCC 3 cut(s) 140, 251, 285
BspCNI CTCAG 2 cut(s) 63, 549
BspEI TCCGGA 1 cut(s) 538
BspHI TCATGA 1 cut(s) 442
BspMAI CTGCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 536
BsrI ACTGG 2 cut(s) 199, 465
BssECI CCNNGG 1 cut(s) 339
BssSI CACGAG 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 603
Bst4CI ACNGT 1 cut(s) 501
Bst6I CTCTTC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 2 cut(s) 71, 557
BstENI CCTNNNNNAGG 1 cut(s) 123
BstMAI GTCTC 2 cut(s) 536, 627
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 2 cut(s) 84, 627
BstV2I GAAGAC 2 cut(s) 176, 534
BsuRI GGCC 3 cut(s) 140, 251, 285
BtsI GCAGTG 2 cut(s) 81, 519
BtsIMutI CAGTG 3 cut(s) 81, 497, 519
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 564
CciI TCATGA 1 cut(s) 442
CseI GACGC 1 cut(s) 539
Csp6I GTAC 2 cut(s) 40, 316
CviAII CATG 3 cut(s) 142, 443, 620
CviQI GTAC 2 cut(s) 40, 316
DdeI CTNAG 2 cut(s) 71, 557
EaeI YGGCCR 2 cut(s) 138, 249
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco147I AGGCCT 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 536
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 627
FaeI CATG 3 cut(s) 145, 446, 623
FaqI GGGAC 1 cut(s) 124
FatI CATG 3 cut(s) 141, 442, 619
FauI CCCGC 1 cut(s) 555
FspBI CTAG 2 cut(s) 26, 33
HaeIII GGCC 3 cut(s) 140, 251, 285
HapII CCGG 3 cut(s) 306, 341, 539
HgaI GACGC 1 cut(s) 539
Hin1II CATG 3 cut(s) 145, 446, 623
HinfI GANTC 1 cut(s) 335
HpaII CCGG 3 cut(s) 306, 341, 539
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 4 cut(s) 47, 148, 443, 539
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 501
HpyCH4V TGCA 6 cut(s) 86, 116, 125, 164, 404, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 71, 557
Hsp92II CATG 3 cut(s) 145, 446, 623
Kpn2I TCCGGA 1 cut(s) 538
LmnI GCTCC 2 cut(s) 67, 553
LweI GCATC 3 cut(s) 4, 112, 403
MaeI CTAG 2 cut(s) 26, 33
MboII GAAGA 4 cut(s) 181, 197, 478, 539
MfeI CAATTG 2 cut(s) 9, 570
MlsI TGGCCA 2 cut(s) 140, 251
MluCI AATT 3 cut(s) 9, 436, 570
MluNI TGGCCA 2 cut(s) 140, 251
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 6 cut(s) 54, 66, 296, 441, 500, 552
Mox20I TGGCCA 2 cut(s) 140, 251
MroI TCCGGA 1 cut(s) 538
MscI TGGCCA 2 cut(s) 140, 251
MseI TTAA 1 cut(s) 579
Msp20I TGGCCA 2 cut(s) 140, 251
MspI CCGG 3 cut(s) 306, 341, 539
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 2 cut(s) 9, 570
Mva1269I GAATGC 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 341
NlaIII CATG 3 cut(s) 145, 446, 623
PaeR7I CTCGAG 1 cut(s) 45
PagI TCATGA 1 cut(s) 442
PceI AGGCCT 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 2 cut(s) 41, 317
RsaNI GTAC 2 cut(s) 40, 316
SaqAI TTAA 1 cut(s) 579
ScrFI CCNGG 1 cut(s) 341
SetI ASST 6 cut(s) 72, 121, 130, 135, 526, 558
SfaNI GCATC 3 cut(s) 4, 112, 403
SfcI CTRYAG 2 cut(s) 84, 627
Sfr274I CTCGAG 1 cut(s) 45
SlaI CTCGAG 1 cut(s) 45
SmlI CTYRAG 2 cut(s) 45, 62
SmoI CTYRAG 2 cut(s) 45, 62
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 3 cut(s) 9, 436, 570
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 1 cut(s) 562
SspMI CTAG 2 cut(s) 26, 33
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 501
TaqI TCGA 6 cut(s) 46, 177, 324, 333, 396, 411
TasI AATT 3 cut(s) 9, 436, 570
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 3 cut(s) 88, 504, 519
TspDTI ATGAA 3 cut(s) 17, 399, 470
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 3 cut(s) 88, 504, 519
XagI CCTNNNNNAGG 1 cut(s) 123
XhoI CTCGAG 1 cut(s) 45
XspI CTAG 2 cut(s) 26, 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.