MD02G1073300.v1.1

O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000432
Physical Location & Seq
Reverse (-)
5902929 .. 5903673
745 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1073300.v1.1.491

Sequence Viewer

Length: 225 bp
ATGTTTACCTACAACAAACATTATGCCTTGCAGATTACGGCCGTAGACATCGACCGAAAAGCATACGAAATGGGGTTGCCAAGTATCAAAAAAGCTGGCGTCGAAAACAAAATCGACTTCATTGAGTCCCCAGCTCTGCCAATTCTTGATAAACTGTTACAAGACCCAGAGAAGGAAGGGAGTTTCGACTTTGCTTTCGTTGACGCGGACAAGAACAACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

75

Amino Acids

8.44

Weight (kDa)

4.75

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 11 - 74 2e-21 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 172
AluBI AGCT 2 cut(s) 95, 134
AluI AGCT 2 cut(s) 95, 134
AoxI GGCC 1 cut(s) 39
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
BceAI ACGGC 2 cut(s) 26, 54
BfaI CTAG 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 172
BseX3I CGGCCG 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 206
Bsh1285I CGRYCG 2 cut(s) 42, 55
BshFI GGCC 1 cut(s) 41
BsiEI CGRYCG 2 cut(s) 42, 55
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 1 cut(s) 41
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 206
BssNI GRCGYC 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 97
BstFNI CGCG 1 cut(s) 206
BstMCI CGRYCG 2 cut(s) 42, 55
BstUI CGCG 1 cut(s) 206
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 97
CseI GACGC 2 cut(s) 88, 212
CviJI RGCY 3 cut(s) 41, 95, 134
CviKI_1 RGCY 3 cut(s) 41, 95, 134
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 39
Eco52I CGGCCG 1 cut(s) 39
FaiI YATR 2 cut(s) 24, 64
FaqI GGGAC 1 cut(s) 112
FblI GTMKAC 1 cut(s) 45
FspBI CTAG 1 cut(s) 223
GsaI CCCAGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 41
HgaI GACGC 2 cut(s) 88, 212
Hin1I GRCGYC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 6, 46, 202
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 3 cut(s) 6, 46, 202
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 166, 170
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 81, 144, 180
MaeI CTAG 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 156
MluCI AATT 1 cut(s) 141
MlyI GAGTC 1 cut(s) 134
MvnI CGCG 1 cut(s) 206
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 130
SchI GAGTC 1 cut(s) 134
SetI ASST 3 cut(s) 11, 97, 136
SgeI CNNG 8 cut(s) 40, 93, 108, 143, 158, 173, 179, 217
Sse9I AATT 1 cut(s) 141
SsiI CCGC 1 cut(s) 206
SspMI CTAG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 156
TaqI TCGA 4 cut(s) 51, 102, 114, 186
TaqII GACCGA 1 cut(s) 69
TasI AATT 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.