Rorug02G0029000

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000432
Physical Location & Seq
Reverse (-)
2313836 .. 2314581
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0029000.1

Sequence Viewer

Length: 519 bp
ATGGGGAAAGCCATGAATGTTTTATTAGTTGCTGTGATAGCATTGGCAGCAATGTTACATAGAACAGAAGCTGATGATCATGAGTATGAGTTGGTTTGGGCTATTCCGTCTGGTGGAGCCGGCACGTATGCAGCCTGGTCGGCCGAGCATACCTTTGAAATCAACGTCGATAGTATAACATTTGAGTTTTCATCAGGAGAACAAGACCTGGCTTTAGTGACAAAGGAGGATTTTGATAGTTGTACCACTACAAATCCGATATGGGAAACAACAGATCCAGTTGGTGTTGGAATTGTTCAACCCGGCACATTTTATTTCATCTGCACATTCGCCGGCCATTGCGCCAAAGGGCAGAAAGTTGCCACAAACTGGACCAATTCTTCAGCTGCGGCACCTGCTCCATGTCCAAGTTCAACAGCAACCACTTACTCCGCTCTGCCACTTAAATTTCTCTCCAACAGAGTTAACAAGCACGGCAACAAGAAGAAAGTGTCTTTGACATTAGGGGGTGCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

172

Amino Acids

18.3

Weight (kDa)

5.43

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 41 - 118 2.7e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
AccB1I GGYRCC 2 cut(s) 391, 509
AccB7I CCANNNNNTGG 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 434
AciI CCGC 2 cut(s) 389, 432
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 2 cut(s) 141, 334
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 113, 369
AgsI TTSAA 3 cut(s) 158, 299, 414
AjnI CCWGG 2 cut(s) 134, 207
AluBI AGCT 2 cut(s) 71, 386
AluI AGCT 2 cut(s) 71, 386
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 2 cut(s) 141, 334
ApeKI GCWGC 3 cut(s) 47, 131, 386
ApoI RAATTY 1 cut(s) 446
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 303
AvaII GGWCC 1 cut(s) 372
BanI GGYRCC 2 cut(s) 391, 509
BbvI GCAGC 3 cut(s) 59, 143, 373
BceAI ACGGC 1 cut(s) 490
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BciT130I CCWGG 2 cut(s) 136, 209
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 403
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 4 cut(s) 48, 132, 387, 390
BlsI GCNGC 4 cut(s) 49, 133, 388, 391
Bme1390I CCNGG 3 cut(s) 136, 209, 303
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 3 cut(s) 118, 393, 511
BmrFI CCNGG 3 cut(s) 136, 209, 303
BpuMI CCSGG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 126
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 369
Bse118I RCCGGY 2 cut(s) 119, 332
Bse1I ACTGG 2 cut(s) 278, 374
Bse3DI GCAATG 2 cut(s) 57, 337
BseBI CCWGG 2 cut(s) 136, 209
BseLI CCNNNNNNNGG 2 cut(s) 113, 369
BseMI GCAATG 2 cut(s) 57, 337
BseNI ACTGG 2 cut(s) 278, 374
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 3 cut(s) 59, 143, 373
BsgI GTGCAG 1 cut(s) 307
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 143, 336
BshNI GGYRCC 2 cut(s) 391, 509
BsiEI CGRYCG 1 cut(s) 144
BsiSI CCGG 3 cut(s) 120, 303, 333
BslI CCNNNNNNNGG 2 cut(s) 113, 369
BsnI GGCC 2 cut(s) 143, 336
Bsp143I GATC 2 cut(s) 76, 274
BspACI CCGC 2 cut(s) 389, 432
BspANI GGCC 2 cut(s) 143, 336
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 118, 393, 511
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 2 cut(s) 391, 509
BsrBI CCGCTC 1 cut(s) 434
BsrDI GCAATG 2 cut(s) 57, 337
BsrFI RCCGGY 2 cut(s) 119, 332
BsrI ACTGG 2 cut(s) 278, 374
BssAI RCCGGY 2 cut(s) 119, 332
BssMI GATC 2 cut(s) 76, 274
Bst2UI CCWGG 2 cut(s) 136, 209
BstBAI YACGTR 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 121, 334
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 2 cut(s) 79, 277
BstMBI GATC 2 cut(s) 76, 274
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 140, 395
BstNI CCWGG 2 cut(s) 136, 209
BstSCI CCNGG 3 cut(s) 134, 207, 301
BstV1I GCAGC 3 cut(s) 59, 143, 373
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 143, 336
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 121, 334
CaiI CAGNNNCTG 1 cut(s) 71
CciI TCATGA 1 cut(s) 79
CfoI GCGC 1 cut(s) 344
Cfr10I RCCGGY 2 cut(s) 119, 332
Cfr13I GGNCC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 243
CviAII CATG 3 cut(s) 13, 80, 402
CviJI RGCY 9 cut(s) 11, 71, 101, 119, 134, 143, 212, 336, 386
CviKI_1 RGCY 9 cut(s) 11, 71, 101, 119, 134, 143, 212, 336, 386
CviQI GTAC 1 cut(s) 243
DpnI GATC 2 cut(s) 78, 276
DpnII GATC 2 cut(s) 76, 274
EaeI YGGCCR 2 cut(s) 141, 334
EagI CGGCCG 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 372
Eco52I CGGCCG 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 134, 207
FaeI CATG 3 cut(s) 16, 83, 405
FaiI YATR 9 cut(s) 14, 60, 81, 87, 129, 150, 176, 262, 403
FatI CATG 3 cut(s) 12, 79, 401
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 4 cut(s) 48, 132, 387, 390
Fsp4HI GCNGC 4 cut(s) 48, 132, 387, 390
GlaI GCGC 1 cut(s) 343
GluI GCNGC 4 cut(s) 48, 132, 387, 390
HaeIII GGCC 2 cut(s) 143, 336
HapII CCGG 3 cut(s) 120, 303, 333
HhaI GCGC 1 cut(s) 344
Hin1II CATG 3 cut(s) 16, 83, 405
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 3 cut(s) 120, 303, 333
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 80, 195
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 1 cut(s) 170
HpyCH4IV ACGT 2 cut(s) 125, 165
HpyCH4V TGCA 2 cut(s) 131, 324
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 140, 395
HpySE526I ACGT 2 cut(s) 125, 165
Hsp92II CATG 3 cut(s) 16, 83, 405
HspAI GCGC 1 cut(s) 342
KroI GCCGGC 2 cut(s) 119, 332
KroNI GCCGGC 2 cut(s) 121, 334
Ksp22I TGATCA 1 cut(s) 76
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 2 cut(s) 76, 274
LmnI GCTCC 2 cut(s) 116, 403
Lsp1109I GCAGC 3 cut(s) 59, 143, 373
MaeII ACGT 2 cut(s) 125, 165
MaeIII GTNAC 2 cut(s) 54, 217
MalI GATC 2 cut(s) 78, 276
MbiI CCGCTC 1 cut(s) 434
MboI GATC 2 cut(s) 76, 274
MboII GAAGA 2 cut(s) 372, 496
MflI RGATCY 1 cut(s) 274
MluCI AATT 3 cut(s) 291, 376, 446
MmeI TCCRAC 2 cut(s) 268, 480
MnlI CCTC 1 cut(s) 220
MroNI GCCGGC 2 cut(s) 119, 332
MseI TTAA 2 cut(s) 444, 465
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 3 cut(s) 120, 303, 333
MspR9I CCNGG 3 cut(s) 136, 209, 303
MvaI CCWGG 2 cut(s) 136, 209
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 140, 395
NaeI GCCGGC 2 cut(s) 121, 334
NciI CCSGG 1 cut(s) 303
NdeII GATC 2 cut(s) 76, 274
NgoMIV GCCGGC 2 cut(s) 119, 332
NlaIII CATG 3 cut(s) 16, 83, 405
NlaIV GGNNCC 3 cut(s) 118, 393, 511
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 217
PagI TCATGA 1 cut(s) 79
PaqCI CACCTGC 1 cut(s) 403
PdiI GCCGGC 2 cut(s) 121, 334
PflMI CCANNNNNTGG 1 cut(s) 369
PkrI GCNGC 4 cut(s) 49, 133, 388, 391
Ppu21I YACGTR 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 134, 207
PspGI CCWGG 2 cut(s) 134, 207
PspN4I GGNNCC 3 cut(s) 118, 393, 511
PspPI GGNCC 1 cut(s) 372
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 2 cut(s) 444, 465
SatI GCNGC 4 cut(s) 48, 132, 387, 390
Sau3AI GATC 2 cut(s) 76, 274
Sau96I GGNCC 1 cut(s) 372
ScrFI CCNGG 3 cut(s) 136, 209, 303
SetI ASST 7 cut(s) 73, 128, 155, 168, 210, 388, 397
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 3 cut(s) 291, 376, 446
SsiI CCGC 2 cut(s) 389, 432
StyD4I CCNGG 3 cut(s) 134, 207, 301
TaiI ACGT 2 cut(s) 128, 168
TaqI TCGA 1 cut(s) 168
TasI AATT 3 cut(s) 291, 376, 446
TauI GCSGC 1 cut(s) 392
Tru1I TTAA 2 cut(s) 444, 465
Tru9I TTAA 2 cut(s) 444, 465
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 3 cut(s) 47, 131, 386
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 29, 180, 307
TspGWI ACGGA 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.