RchiOBHm_Chr3g0467881

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000432
Physical Location & Seq
Forward (+)
13986903 .. 13988058
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43380

Sequence Viewer

Length: 654 bp
ATGCAGTATCTACTAGATACTAGTGTGTACCCGAGAGAACCAGAGCCACTCAAGGAGCTGAGGCAAGCTACTGCAAAACTCCCCAATGCTTGCTTTGGTACTTCACCTGATGCAGGTCAGTTAATGGCCATGCTCTTGAAACTTGGGAATGCAAAAAAGACAATTGAAGTTGGAGTTTTTACTGGCTACTCTCTTCTCCTTACCGCTCTCGCAATTCCTCATGATGGCAAGATCATGGCCATAGATAGAGATCGCACAACATACGAAATAGGCCTCCCAATCATACAAAAAGCTGGAGTGGAACACAAAATCGACTACATTGAATCACCAGCTCTGCCTGTTCTTGACAATCTCTTGGGGGAGCCAAAGAATGAGGCTGATTTTGACTTTGCGTTTGTTGACGCTGATAAAGGAAATTATTGGAATTATCATGAGAGGCTGATGAAGTTGGTGAAGATCGGAGGGATTGTTGTATATGATAACACGCTGTGGGGAGGGACAGTGGCTAAGCCTGAAGAGGTTGTTCCAGAAAACAAAAGGGAGTTGAGGCGTCATGCGGTTGAGTTTAACAAGTTAGTTTCAGCTGACCCTCGAGTTGAAATATCTCATGCTTCTATAGGTGATGGGATCATCATCTGCAGACGCATTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

217

Amino Acids

24.18

Weight (kDa)

5.78

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 7 - 216 3.1e-76 O-methyltransferase
Methyltransf_24 PF13578 55 - 161 1.7e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 206
AciI CCGC 2 cut(s) 204, 557
AclWI GGATC 1 cut(s) 635
AcoI YGGCCR 2 cut(s) 126, 237
AcuI CTGAAG 1 cut(s) 534
AcyI GRCGYC 1 cut(s) 550
AdeI CACNNNGTG 1 cut(s) 489
AfaI GTAC 2 cut(s) 29, 100
AfiI CCNNNNNNNGG 2 cut(s) 113, 224
AgsI TTSAA 4 cut(s) 139, 167, 323, 599
AhlI ACTAGT 1 cut(s) 20
AluBI AGCT 5 cut(s) 58, 68, 293, 332, 584
AluI AGCT 5 cut(s) 58, 68, 293, 332, 584
AlwI GGATC 1 cut(s) 635
Ama87I CYCGRG 2 cut(s) 31, 591
AoxI GGCC 3 cut(s) 126, 237, 271
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AsuHPI GGTGA 4 cut(s) 96, 318, 463, 632
AvaI CYCGRG 2 cut(s) 31, 591
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BalI TGGCCA 2 cut(s) 128, 239
BbvCI CCTCAGC 1 cut(s) 59
BccI CCATC 2 cut(s) 218, 617
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 3 cut(s) 14, 21, 652
BfmI CTRYAG 2 cut(s) 615, 637
BfuAI ACCTGC 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 507
BmeT110I CYCGRG 2 cut(s) 31, 591
BmiI GGNNCC 1 cut(s) 363
BmsI GCATC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 35
BsaBI GATNNNNATC 2 cut(s) 249, 632
BsaHI GRCGYC 1 cut(s) 550
BsaXI ACNNNNNCTCC 4 cut(s) 453, 483, 486, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 224
Bse1I ACTGG 1 cut(s) 187
Bse8I GATNNNNATC 2 cut(s) 249, 632
BseJI GATNNNNATC 2 cut(s) 249, 632
BseLI CCNNNNNNNGG 2 cut(s) 113, 224
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 187
BshFI GGCC 3 cut(s) 128, 239, 273
BsiHKCI CYCGRG 2 cut(s) 31, 591
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 2 cut(s) 113, 224
BsmFI GGGAC 1 cut(s) 511
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 3 cut(s) 128, 239, 273
BsoBI CYCGRG 2 cut(s) 31, 591
Bsp143I GATC 4 cut(s) 231, 250, 456, 627
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 2 cut(s) 204, 557
BspANI GGCC 3 cut(s) 128, 239, 273
BspCNI CTCAG 1 cut(s) 51
BspHI TCATGA 2 cut(s) 220, 430
BspLI GGNNCC 1 cut(s) 363
BspMAI CTGCAG 1 cut(s) 641
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 187
BssMI GATC 4 cut(s) 231, 250, 456, 627
BssNI GRCGYC 1 cut(s) 550
Bst4CI ACNGT 1 cut(s) 502
Bst6I CTCTTC 2 cut(s) 198, 510
BstACI GRCGYC 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 66, 91
BstDEI CTNAG 2 cut(s) 59, 507
BstENI CCTNNNNNAGG 1 cut(s) 111
BstKTI GATC 4 cut(s) 234, 253, 459, 630
BstMBI GATC 4 cut(s) 231, 250, 456, 627
BstSFI CTRYAG 2 cut(s) 615, 637
BsuRI GGCC 3 cut(s) 128, 239, 273
BtsIMutI CAGTG 1 cut(s) 507
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 66, 91
CciI TCATGA 2 cut(s) 220, 430
CseI GACGC 2 cut(s) 410, 539
Csp6I GTAC 2 cut(s) 28, 99
CviAII CATG 6 cut(s) 130, 221, 235, 431, 554, 608
CviQI GTAC 2 cut(s) 28, 99
DdeI CTNAG 2 cut(s) 59, 507
DpnI GATC 4 cut(s) 233, 252, 458, 629
DpnII GATC 4 cut(s) 231, 250, 456, 627
DraIII CACNNNGTG 1 cut(s) 489
EaeI YGGCCR 2 cut(s) 126, 237
Eam1104I CTCTTC 2 cut(s) 198, 510
EarI CTCTTC 2 cut(s) 198, 510
Eco147I AGGCCT 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 534
Eco88I CYCGRG 2 cut(s) 31, 591
EcoNI CCTNNNNNAGG 1 cut(s) 111
FaeI CATG 6 cut(s) 133, 224, 238, 434, 557, 611
FaqI GGGAC 1 cut(s) 511
FatI CATG 6 cut(s) 129, 220, 234, 430, 553, 607
FspBI CTAG 3 cut(s) 14, 21, 652
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 3 cut(s) 128, 239, 273
HgaI GACGC 2 cut(s) 410, 539
Hin1I GRCGYC 1 cut(s) 550
Hin1II CATG 6 cut(s) 133, 224, 238, 434, 557, 611
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 1 cut(s) 323
HphI GGTGA 4 cut(s) 96, 318, 463, 632
Hpy166II GTNNAC 2 cut(s) 28, 400
Hpy188I TCNGA 1 cut(s) 461
Hpy188III TCNNGA 5 cut(s) 136, 221, 344, 431, 527
Hpy8I GTNNAC 2 cut(s) 28, 400
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4V TGCA 5 cut(s) 4, 74, 113, 152, 639
HpyF3I CTNAG 2 cut(s) 59, 507
Hsp92I GRCGYC 1 cut(s) 550
Hsp92II CATG 6 cut(s) 133, 224, 238, 434, 557, 611
Kzo9I GATC 4 cut(s) 231, 250, 456, 627
LmnI GCTCC 2 cut(s) 55, 361
LpnPI CCDG 9 cut(s) 54, 99, 120, 168, 279, 342, 351, 525, 540
LweI GCATC 1 cut(s) 100
MaeI CTAG 3 cut(s) 14, 21, 652
MalI GATC 4 cut(s) 233, 252, 458, 629
MbiI CCGCTC 1 cut(s) 206
MboI GATC 4 cut(s) 231, 250, 456, 627
MboII GAAGA 3 cut(s) 185, 466, 527
MfeI CAATTG 1 cut(s) 162
MlsI TGGCCA 2 cut(s) 128, 239
MluCI AATT 4 cut(s) 162, 213, 415, 424
MluNI TGGCCA 2 cut(s) 128, 239
MmeI TCCRAC 1 cut(s) 151
Mox20I TGGCCA 2 cut(s) 128, 239
MscI TGGCCA 2 cut(s) 128, 239
MseI TTAA 2 cut(s) 122, 567
Msp20I TGGCCA 2 cut(s) 128, 239
MspA1I CMGCKG 1 cut(s) 584
MunI CAATTG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 154
NdeII GATC 4 cut(s) 231, 250, 456, 627
NlaIII CATG 6 cut(s) 133, 224, 238, 434, 557, 611
NlaIV GGNNCC 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 591
PagI TCATGA 2 cut(s) 220, 430
PceI AGGCCT 1 cut(s) 273
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 363
PspXI VCTCGAGB 1 cut(s) 591
PstI CTGCAG 1 cut(s) 641
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 2 cut(s) 29, 100
RsaNI GTAC 2 cut(s) 28, 99
SaqAI TTAA 2 cut(s) 122, 567
Sau3AI GATC 4 cut(s) 231, 250, 456, 627
SetI ASST 9 cut(s) 60, 70, 109, 118, 295, 334, 522, 586, 622
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 615, 637
Sfr274I CTCGAG 1 cut(s) 591
SlaI CTCGAG 1 cut(s) 591
SmlI CTYRAG 2 cut(s) 50, 591
SmoI CTYRAG 2 cut(s) 50, 591
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 4 cut(s) 162, 213, 415, 424
SseBI AGGCCT 1 cut(s) 273
SsiI CCGC 2 cut(s) 204, 557
SspMI CTAG 3 cut(s) 14, 21, 652
StuI AGGCCT 1 cut(s) 273
TaaI ACNGT 1 cut(s) 502
TaqI TCGA 2 cut(s) 312, 592
TasI AATT 4 cut(s) 162, 213, 415, 424
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 122, 567
Tru9I TTAA 2 cut(s) 122, 567
TscAI CASTG 1 cut(s) 507
TspDTI ATGAA 1 cut(s) 458
TspRI CASTG 1 cut(s) 507
XagI CCTNNNNNAGG 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 591
XspI CTAG 3 cut(s) 14, 21, 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.