Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017518.1

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

3643 .. 4832

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017518.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgtggcagtacatcttggagactagtgtgtatccacgtgaaccagcgcctctcaaggagctaagggatgccactgccagccaccctcgtgctggattggctactgcaccagatgcagctcagttactagccatgctgttgaggctcatagatgcaaagaagacaattgaaattggtgttttcacgggatattctcttctcctcactgcgcttacaattcctgaggatggcaagattgtagccatagatataaatcgtgagacatatgatcaaataggcttgccgatcataaagaaagctggtgttgagcacaaaattgacttcattgaatctgaggctgttccagttcttgataagctattggaacatcctgaaaatgaaggcagtttcgactttgcctatgtggatgccgacaaggttaacaattggaattaccacgagagactactgaagctgttgaaggtgggtggcttagttgtctatgacaacacactctgcagaggatcagtcgcgttgcctgatgagttagttccagagccgaggaaacagcgcagacagctagccattgagcataacaagacacttgcagccgatccacgtatccaaatatctcatgcttctgtgggtgatgggatcatgatttgtcacagaatcatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

219

Amino Acids

24.43

Weight (kDa)

5.66

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	512
AclWI	GGATC	3 cut(s)	511, 587, 641
AcuI	CTGAAG	1 cut(s)	470
AcvI	CACGTG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	92, 227
AgsI	TTSAA	3 cut(s)	170, 329, 460
AhlI	ACTAGT	1 cut(s)	23
AleI	CACNNNNGTG	1 cut(s)	87
AluBI	AGCT	6 cut(s)	61, 119, 299, 358, 454, 559
AluI	AGCT	6 cut(s)	61, 119, 299, 358, 454, 559
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	3 cut(s)	14, 254, 436
AlwI	GGATC	3 cut(s)	511, 587, 641
ApeKI	GCWGC	2 cut(s)	116, 587
AspLEI	GCGC	3 cut(s)	49, 211, 552
AsuHPI	GGTGA	1 cut(s)	638
AsuNHI	GCTAGC	1 cut(s)	559
AxyI	CCTNAGG	1 cut(s)	222
BauI	CACGAG	2 cut(s)	87, 437
BbrPI	CACGTG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	128, 599
BccI	CCATC	2 cut(s)	221, 623
BciVI	GTATCC	2 cut(s)	42, 611
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	3 cut(s)	14, 254, 436
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	3 cut(s)	24, 128, 560
BfmI	CTRYAG	1 cut(s)	496
BfoI	RGCGCY	1 cut(s)	50
BfuI	GTATCC	2 cut(s)	42, 611
BisI	GCNGC	2 cut(s)	117, 588
BlsI	GCNGC	2 cut(s)	118, 589
BmsI	GCATC	4 cut(s)	58, 103, 142, 397
BmtI	GCTAGC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	38
BsaAI	YACGTR	2 cut(s)	38, 599
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 227
Bse1I	ACTGG	1 cut(s)	344
Bse21I	CCTNAGG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	4 cut(s)	73, 232, 367, 412
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	92, 227
BseMII	CTCAG	3 cut(s)	134, 213, 324
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	128, 599
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	92, 227
BsmAI	GTCTC	3 cut(s)	14, 254, 436
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	5 cut(s)	268, 285, 503, 592, 633
BspCNI	CTCAG	3 cut(s)	133, 214, 325
BspFNI	CGCG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	636
BspMAI	CTGCAG	1 cut(s)	500
BspOI	GCTAGC	1 cut(s)	563
BspPI	GGATC	3 cut(s)	511, 587, 641
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	5 cut(s)	268, 285, 503, 592, 633
BssSI	CACGAG	2 cut(s)	87, 437
Bst2BI	CACGAG	2 cut(s)	87, 437
Bst6I	CTCTTC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstBAI	YACGTR	2 cut(s)	38, 599
BstC8I	GCNNGC	3 cut(s)	79, 281, 561
BstDEI	CTNAG	5 cut(s)	62, 120, 222, 333, 472
BstF5I	GGATG	4 cut(s)	73, 232, 367, 412
BstFNI	CGCG	1 cut(s)	512
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	3 cut(s)	49, 211, 552
BstKTI	GATC	5 cut(s)	271, 288, 506, 595, 636
BstMAI	GTCTC	3 cut(s)	14, 254, 436
BstMBI	GATC	5 cut(s)	268, 285, 503, 592, 633
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 113, 142, 556
BstSFI	CTRYAG	1 cut(s)	496
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	128, 599
BstV2I	GAAGAC	1 cut(s)	167
Bsu36I	CCTNAGG	1 cut(s)	222
BsuI	GTATCC	2 cut(s)	42, 611
BtsCI	GGATG	4 cut(s)	73, 232, 367, 412
BtsI	GCAGTG	2 cut(s)	72, 204
BtsIMutI	CAGTG	2 cut(s)	72, 204
Cac8I	GCNNGC	3 cut(s)	79, 281, 561
CciI	TCATGA	1 cut(s)	636
CfoI	GCGC	3 cut(s)	49, 211, 552
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	133, 614, 637
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	5 cut(s)	62, 120, 222, 333, 472
DpnI	GATC	5 cut(s)	270, 287, 505, 594, 635
DpnII	GATC	5 cut(s)	268, 285, 503, 592, 633
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	470
Eco72I	CACGTG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	136, 617, 640
FatI	CATG	3 cut(s)	132, 613, 636
FauNDI	CATATG	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	117, 588
FokI	GGATG	4 cut(s)	80, 239, 354, 419
Fsp4HI	GCNGC	2 cut(s)	117, 588
FspBI	CTAG	3 cut(s)	24, 128, 560
GlaI	GCGC	3 cut(s)	48, 210, 551
GluI	GCNGC	2 cut(s)	117, 588
HaeII	RGCGCY	1 cut(s)	50
HhaI	GCGC	3 cut(s)	49, 211, 552
Hin1II	CATG	3 cut(s)	136, 617, 640
Hin6I	GCGC	3 cut(s)	47, 209, 550
HinP1I	GCGC	3 cut(s)	47, 209, 550
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	329, 651
HpaI	GTTAAC	1 cut(s)	421
HphI	GGTGA	1 cut(s)	638
Hpy166II	GTNNAC	2 cut(s)	41, 421
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	6 cut(s)	221, 257, 350, 371, 533, 637
Hpy8I	GTNNAC	2 cut(s)	41, 421
HpyAV	CCTTC	2 cut(s)	374, 454
HpyCH4IV	ACGT	2 cut(s)	37, 598
HpyCH4V	TGCA	5 cut(s)	107, 116, 155, 498, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 113, 142, 556
HpyF3I	CTNAG	5 cut(s)	62, 120, 222, 333, 472
HpySE526I	ACGT	2 cut(s)	37, 598
Hsp92II	CATG	3 cut(s)	136, 617, 640
HspAI	GCGC	3 cut(s)	47, 209, 550
Ksp22I	TGATCA	1 cut(s)	268
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	5 cut(s)	268, 285, 503, 592, 633
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	2 cut(s)	128, 599
LweI	GCATC	4 cut(s)	58, 103, 142, 397
MaeI	CTAG	3 cut(s)	24, 128, 560
MaeII	ACGT	2 cut(s)	37, 598
MaeIII	GTNAC	2 cut(s)	123, 644
MalI	GATC	5 cut(s)	270, 287, 505, 594, 635
MboI	GATC	5 cut(s)	268, 285, 503, 592, 633
MboII	GAAGA	2 cut(s)	172, 188
MfeI	CAATTG	2 cut(s)	165, 424
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	6 cut(s)	165, 171, 216, 315, 424, 430
MnlI	CCTC	8 cut(s)	60, 96, 135, 212, 217, 328, 494, 534
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	87
MunI	CAATTG	2 cut(s)	165, 424
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	4 cut(s)	98, 113, 142, 556
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	5 cut(s)	268, 285, 503, 592, 633
NheI	GCTAGC	1 cut(s)	559
NlaIII	CATG	3 cut(s)	136, 617, 640
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	1 cut(s)	644
OliI	CACNNNNGTG	1 cut(s)	87
PagI	TCATGA	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	329, 651
PkrI	GCNGC	2 cut(s)	118, 589
PmaCI	CACGTG	1 cut(s)	38
PmlI	CACGTG	1 cut(s)	38
Ppu21I	YACGTR	2 cut(s)	38, 599
PspCI	CACGTG	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	2 cut(s)	117, 588
Sau3AI	GATC	5 cut(s)	268, 285, 503, 592, 633
SduI	GDGCHC	1 cut(s)	312
SfaNI	GCATC	4 cut(s)	58, 103, 142, 397
SfcI	CTRYAG	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	6 cut(s)	165, 171, 216, 315, 424, 430
SspMI	CTAG	3 cut(s)	24, 128, 560
TaiI	ACGT	2 cut(s)	40, 601
TaqI	TCGA	1 cut(s)	390
TasI	AATT	6 cut(s)	165, 171, 216, 315, 424, 430
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	329, 651
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	2 cut(s)	79, 211
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	2 cut(s)	116, 587
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	2 cut(s)	313, 393
TspRI	CASTG	2 cut(s)	79, 211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XspI	CTAG	3 cut(s)	24, 128, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.