Rorug02G0028900

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000432
Physical Location & Seq
Reverse (-)
2310069 .. 2310661
593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0028900.1

Sequence Viewer

Length: 471 bp
ATGAATATGAAGTATGTGTTCGTGCTTGTCATAGCAATCGCAGCCATCGCAGAAGGCGCAGAATACACCGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTACTTTGTGGAGAATGATACTCTAGTGTTTAACTTTGAACAAGGAATACATGACATCACTGTACTAACCAAGGAAGACTTCGACGCCTGCAACATGAAGAATCCCTTGTTTCAATCCCCGGAACCAGGTGAAGTTATGGTTATGGCGAGCGACACATTTTACTTCACGTGCAGCTTTGGTCAGCACTGCGCTAATGGGCAAAAGTTTGCCATTTATTTTGCCTCTGCACCTTTGCCTCCCAGTCCAAGTCCGTGTCCAAGTGAATCTGCTACTGCTGATCAATCTACGGAGTCCCGGCCGTTCAAGTTTGTATCGGCAAAGATGGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

156

Amino Acids

17.3

Weight (kDa)

4.36

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 113 4.8e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 434
AcvI CACGTG 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 3 cut(s) 176, 251, 442
AjnI CCWGG 1 cut(s) 262
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 69
AoxI GGCC 1 cut(s) 434
ApeKI GCWGC 2 cut(s) 41, 309
AspLEI GCGC 2 cut(s) 59, 329
AsuC2I CCSGG 2 cut(s) 257, 433
AsuHPI GGTGA 1 cut(s) 278
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BbrPI CACGTG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 53, 321
BccI CCATC 3 cut(s) 53, 85, 454
BceAI ACGGC 1 cut(s) 421
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 2 cut(s) 257, 433
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 161, 469
BisI GCNGC 2 cut(s) 42, 310
BlsI GCNGC 2 cut(s) 43, 311
Bme1390I CCNGG 3 cut(s) 257, 264, 433
BmiI GGNNCC 2 cut(s) 96, 261
BmrFI CCNGG 3 cut(s) 257, 264, 433
BmrI ACTGGG 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 257, 433
BsaAI YACGTR 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 207, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 207, 255
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 378
BseX3I CGGCCG 1 cut(s) 434
BseXI GCAGC 2 cut(s) 53, 321
BsgI GTGCAG 2 cut(s) 328, 348
Bsh1285I CGRYCG 1 cut(s) 437
BshFI GGCC 1 cut(s) 436
BsiEI CGRYCG 1 cut(s) 437
BsiSI CCGG 2 cut(s) 257, 433
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 1 cut(s) 436
Bsp143I GATC 1 cut(s) 415
BspANI GGCC 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 96, 261
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 2 cut(s) 207, 255
BssMI GATC 1 cut(s) 415
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 70, 199
BstACI GRCGYC 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 226, 286
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 2 cut(s) 59, 329
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 415
BstMCI CGRYCG 1 cut(s) 437
BstMWI GCNNNNNNNGC 3 cut(s) 41, 47, 56
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 3 cut(s) 255, 262, 431
BstV1I GCAGC 2 cut(s) 53, 321
BstV2I GAAGAC 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 434
BsuRI GGCC 1 cut(s) 436
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 195, 322
Cac8I GCNNGC 2 cut(s) 226, 286
CfoI GCGC 2 cut(s) 59, 329
CseI GACGC 1 cut(s) 230
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 1 cut(s) 200
CviAII CATG 4 cut(s) 82, 123, 188, 232
CviJI RGCY 3 cut(s) 44, 312, 436
CviKI_1 RGCY 3 cut(s) 44, 312, 436
CviQI GTAC 1 cut(s) 200
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 434
EagI CGGCCG 1 cut(s) 434
EclXI CGGCCG 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 434
Eco72I CACGTG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 85, 126, 191, 235
FalI AAGNNNNNCTT 6 cut(s) 125, 157, 200, 232, 227, 259
FaqI GGGAC 1 cut(s) 415
FatI CATG 4 cut(s) 81, 122, 187, 231
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 42, 310
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 42, 310
FspBI CTAG 2 cut(s) 161, 469
GlaI GCGC 2 cut(s) 58, 328
GluI GCNGC 2 cut(s) 42, 310
HaeIII GGCC 1 cut(s) 436
HapII CCGG 2 cut(s) 257, 433
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 59, 329
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 85, 126, 191, 235
Hin6I GCGC 2 cut(s) 57, 327
HinP1I GCGC 2 cut(s) 57, 327
HinfI GANTC 3 cut(s) 238, 401, 428
HpaII CCGG 2 cut(s) 257, 433
HphI GGTGA 1 cut(s) 278
Hpy188III TCNNGA 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 70, 199
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 228, 309, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 47, 56
HpySE526I ACGT 1 cut(s) 305
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 85, 126, 191, 235
HspAI GCGC 2 cut(s) 57, 327
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 1 cut(s) 415
LpnPI CCDG 6 cut(s) 238, 249, 270, 276, 391, 446
Lsp1109I GCAGC 2 cut(s) 53, 321
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 2 cut(s) 161, 469
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 464
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 2 cut(s) 224, 247
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 3 cut(s) 108, 370, 384
MseI TTAA 1 cut(s) 168
MspI CCGG 2 cut(s) 257, 433
MspR9I CCNGG 3 cut(s) 257, 264, 433
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 41, 47, 56
NciI CCSGG 2 cut(s) 257, 433
NdeII GATC 1 cut(s) 415
NlaIII CATG 4 cut(s) 85, 126, 191, 235
NlaIV GGNNCC 2 cut(s) 96, 261
PfeI GAWTC 2 cut(s) 238, 401
PkrI GCNGC 2 cut(s) 43, 311
PleI GAGTC 1 cut(s) 436
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 262
PspCI CACGTG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 96, 261
PsrI GAACNNNNNNTAC 2 cut(s) 168, 200
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 42, 310
Sau3AI GATC 1 cut(s) 415
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 3 cut(s) 257, 264, 433
SetI ASST 4 cut(s) 268, 308, 314, 370
SexAI ACCWGGT 1 cut(s) 262
SspMI CTAG 2 cut(s) 161, 469
StyD4I CCNGG 3 cut(s) 255, 262, 431
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 70, 199
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 219
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 2 cut(s) 238, 401
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 202, 329
TseI GCWGC 2 cut(s) 41, 309
TspDTI ATGAA 4 cut(s) 17, 23, 111, 248
TspGWI ACGGA 2 cut(s) 378, 440
TspRI CASTG 2 cut(s) 202, 329
XspI CTAG 2 cut(s) 161, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.