Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

3627998 .. 3629965

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAATCCAGAGGGATGAAGACCGCAAAGGGCGTGTTGCAGAATGATGAATTATCACATTATATCTTGGAGACTAGCGTGTATCCGCGTGAACCGGCACCTCTCAAGGAGCTAAGGGATGCCACTGCCAGCCACCCTCGGGCTGGTTTGGCTACTGCACCAGATGCGGCGCAGTTACTAGGCATGCTGTTGAAACTCATAGGTGCAAAGAAGACAATTGAAATTGGAGTTTTCACAGGATATTCTCTTCTCCTCACTGCGCTTACAATTCCTGAGGATGGCAAGATTGTGGCCATAGATATAAATCGTGAGACATATGATCAAATAGGCTTGCCTGTCATAAAGAAAGCTGGTGTTGAGCACAAAATTGACTTCATTGAATCCGAGGCTGTACCAGTTCTTGATAAGCTATTGGAAAATCCCGAAAATGAAGGCAGTTTCGACTTTGCCTATGTGGATGCCGACAAGTTAAACAATTGGAATTACCACGAGAGACTACTGAAGCTGGTGAAGGTGGGTGGCTTGGTTGTCTATGACAACACTCTATGCAGAGGATCAGTTGCATTGCCTGATGAGTTAGTTCCAGAGCCGAGGAAACAACGCAGACAGCTAGCCATTGAGCATAACCAATCACTTGCAGCAGATCCTCGTATCCAAATCTCTCATGCTTCTGTTGGTGATGGGATGATGATTTGTCGTCGAATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

237

Amino Acids

26.11

Weight (kDa)

5.73

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 235	4.8e-73	O-methyltransferase
Methyltransf_24	PF13578	73 - 180	1.8e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccII	CGCG	1 cut(s)	88
AciI	CCGC	3 cut(s)	24, 86, 167
AclWI	GGATC	2 cut(s)	562, 638
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	3 cut(s)	139, 143, 278
AgsI	TTSAA	3 cut(s)	193, 221, 380
AluBI	AGCT	5 cut(s)	112, 350, 409, 505, 610
AluI	AGCT	5 cut(s)	112, 350, 409, 505, 610
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	3 cut(s)	65, 305, 487
AlwI	GGATC	2 cut(s)	562, 638
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	638
AspLEI	GCGC	2 cut(s)	172, 262
AsuHPI	GGTGA	2 cut(s)	520, 689
AsuNHI	GCTAGC	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	138
AxyI	CCTNAGG	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	97
BauI	CACGAG	1 cut(s)	488
BbsI	GAAGAC	2 cut(s)	26, 218
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	2 cut(s)	272, 674
BciVI	GTATCC	2 cut(s)	93, 662
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	3 cut(s)	65, 305, 487
BfaI	CTAG	3 cut(s)	75, 179, 611
BfuI	GTATCC	2 cut(s)	93, 662
BisI	GCNGC	2 cut(s)	168, 639
BlsI	GCNGC	2 cut(s)	169, 640
BmeT110I	CYCGRG	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	3 cut(s)	109, 154, 448
BmtI	GCTAGC	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	26, 218
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	137, 384, 590
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 143, 278
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	395
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	563
Bse8I	GATNNNNATC	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	137, 384, 590
BseGI	GGATG	5 cut(s)	21, 124, 283, 463, 690
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	139, 143, 278
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	650
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	293
BshNI	GGYRCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	139, 143, 278
BsmAI	GTCTC	3 cut(s)	65, 305, 487
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	319, 554, 643
BspACI	CCGC	3 cut(s)	24, 86, 167
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	99
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	2 cut(s)	562, 638
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	137, 384, 590
BssMI	GATC	3 cut(s)	319, 554, 643
BssSI	CACGAG	1 cut(s)	488
Bst2BI	CACGAG	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	4 cut(s)	130, 185, 332, 612
BstDEI	CTNAG	2 cut(s)	113, 273
BstF5I	GGATG	5 cut(s)	21, 124, 283, 463, 690
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	172, 262
BstKTI	GATC	3 cut(s)	322, 557, 646
BstMAI	GTCTC	3 cut(s)	65, 305, 487
BstMBI	GATC	3 cut(s)	319, 554, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 164
BstNSI	RCATGY	1 cut(s)	187
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	650
BstV2I	GAAGAC	2 cut(s)	26, 218
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	93, 662
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	5 cut(s)	21, 124, 283, 463, 690
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	2 cut(s)	123, 255
Cac8I	GCNNGC	4 cut(s)	130, 185, 332, 612
CfoI	GCGC	2 cut(s)	172, 262
Cfr10I	RCCGGY	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	3 cut(s)	184, 665, 706
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	2 cut(s)	113, 273
DpnI	GATC	3 cut(s)	321, 556, 645
DpnII	GATC	3 cut(s)	319, 554, 643
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	138
FaeI	CATG	3 cut(s)	187, 668, 709
FatI	CATG	3 cut(s)	183, 664, 705
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	168, 639
FokI	GGATG	5 cut(s)	28, 131, 290, 470, 697
Fsp4HI	GCNGC	2 cut(s)	168, 639
FspBI	CTAG	3 cut(s)	75, 179, 611
GlaI	GCGC	2 cut(s)	171, 261
GluI	GCNGC	2 cut(s)	168, 639
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	2 cut(s)	172, 262
Hin1II	CATG	3 cut(s)	187, 668, 709
Hin6I	GCGC	2 cut(s)	170, 260
HinP1I	GCGC	2 cut(s)	170, 260
HinfI	GANTC	3 cut(s)	5, 380, 702
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	520, 689
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	6 cut(s)	9, 272, 308, 401, 422, 584
Hpy8I	GTNNAC	1 cut(s)	92
Hpy99I	CGWCG	1 cut(s)	702
HpyAV	CCTTC	2 cut(s)	425, 505
HpyCH4V	TGCA	6 cut(s)	40, 158, 206, 549, 563, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 164
HpyF3I	CTNAG	2 cut(s)	113, 273
Hsp92II	CATG	3 cut(s)	187, 668, 709
HspAI	GCGC	2 cut(s)	170, 260
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	319, 554, 643
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	1 cut(s)	650
LweI	GCATC	3 cut(s)	109, 154, 448
MaeI	CTAG	3 cut(s)	75, 179, 611
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	321, 556, 645
MboI	GATC	3 cut(s)	319, 554, 643
MboII	GAAGA	3 cut(s)	31, 223, 239
MfeI	CAATTG	2 cut(s)	216, 475
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	363
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	7 cut(s)	50, 216, 222, 267, 366, 475, 481
MluNI	TGGCCA	1 cut(s)	293
MnlI	CCTC	9 cut(s)	5, 111, 147, 263, 268, 379, 545, 585, 657
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	1 cut(s)	95
MunI	CAATTG	2 cut(s)	216, 475
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	149, 164
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	319, 554, 643
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	3 cut(s)	187, 668, 709
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	1 cut(s)	615
NspI	RCATGY	1 cut(s)	187
PaeI	GCATGC	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	5, 380, 702
PkrI	GCNGC	2 cut(s)	169, 640
PspN4I	GGNNCC	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	2 cut(s)	168, 639
Sau3AI	GATC	3 cut(s)	319, 554, 643
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	8 cut(s)	103, 114, 205, 352, 411, 507, 516, 612
SfaNI	GCATC	3 cut(s)	109, 154, 448
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	7 cut(s)	50, 216, 222, 267, 366, 475, 481
SsiI	CCGC	3 cut(s)	24, 86, 167
SspMI	CTAG	3 cut(s)	75, 179, 611
TaqI	TCGA	2 cut(s)	441, 700
TasI	AATT	7 cut(s)	50, 216, 222, 267, 366, 475, 481
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	3 cut(s)	5, 380, 702
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	2 cut(s)	130, 262
TseI	GCWGC	1 cut(s)	638
TspDTI	ATGAA	4 cut(s)	32, 63, 364, 444
TspRI	CASTG	2 cut(s)	130, 262
XceI	RCATGY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	3 cut(s)	75, 179, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.