Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

6185744 .. 6186327

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG074300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCGAAAGCTAGTCAATGGTTAGCTGCTGACATATTTCTGAATACCTTGCAGATTGCAGCCATAGATATAGATCGTGAGACATATGAACAAGTAGGATTACCAATCATAAAGAAAGCTGGTGTTGAGCACAAAATTGACTTCATTGAATCTGAGGCTGTACCAGCTCTTGATAAGCTATTAGAAGAAAATCCTGAAAATGAAGGCAGTTTTGACTTTGCCTACGTGGATGCCGACAAGGTTAACAATTGGAATTACCACGAGAGACTAGTGAAGCTGTTGAAGGTGGGTGGCTTAGTTGTTTATGAACACACTCTGCAGAGGATCAGTAGCATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

113

Amino Acids

12.77

Weight (kDa)

4.74

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	18 - 106	9.9e-28	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	332
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	149, 283
AhlI	ACTAGT	1 cut(s)	268
AluBI	AGCT	6 cut(s)	11, 26, 119, 167, 178, 277
AluI	AGCT	6 cut(s)	11, 26, 119, 167, 178, 277
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	74, 259
AlwI	GGATC	1 cut(s)	332
ApeKI	GCWGC	2 cut(s)	26, 59
BauI	CACGAG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	13, 71
BcoDI	GTCTC	2 cut(s)	74, 259
BcuI	ACTAGT	1 cut(s)	268
BfaI	CTAG	2 cut(s)	12, 269
BfmI	CTRYAG	1 cut(s)	317
BisI	GCNGC	2 cut(s)	27, 60
BlsI	GCNGC	2 cut(s)	28, 61
BmsI	GCATC	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	72
BseGI	GGATG	1 cut(s)	235
BseJI	GATNNNNATC	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	13, 71
BsiHKAI	GWGCWC	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	74, 259
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	73, 324
BspCNI	CTCAG	1 cut(s)	145
BspMAI	CTGCAG	1 cut(s)	321
BspPI	GGATC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	333
BssMI	GATC	2 cut(s)	73, 324
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	153, 295
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	2 cut(s)	76, 327
BstMAI	GTCTC	2 cut(s)	74, 259
BstMBI	GATC	2 cut(s)	73, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	13, 71
BtsCI	GGATG	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	161
CviJI	RGCY	9 cut(s)	11, 26, 62, 119, 158, 167, 178, 277, 294
CviKI_1	RGCY	9 cut(s)	11, 26, 62, 119, 158, 167, 178, 277, 294
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	153, 295
DpnI	GATC	2 cut(s)	75, 326
DpnII	GATC	2 cut(s)	73, 324
FaiI	YATR	7 cut(s)	35, 65, 71, 85, 87, 110, 306
FauNDI	CATATG	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	27, 60
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	27, 60
FspBI	CTAG	2 cut(s)	12, 269
GluI	GCNGC	2 cut(s)	27, 60
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	149
HpaI	GTTAAC	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	42, 154
Hpy188III	TCNNGA	3 cut(s)	77, 170, 194
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	197, 277
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	52, 59, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	153, 295
HpySE526I	ACGT	1 cut(s)	225
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	73, 324
LpnPI	CCDG	3 cut(s)	105, 177, 207
Lsp1109I	GCAGC	2 cut(s)	13, 71
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	12, 269
MaeII	ACGT	1 cut(s)	225
MalI	GATC	2 cut(s)	75, 326
MboI	GATC	2 cut(s)	73, 324
MboII	GAAGA	1 cut(s)	197
MfeI	CAATTG	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	3 cut(s)	135, 247, 253
MnlI	CCTC	2 cut(s)	148, 315
MseI	TTAA	1 cut(s)	243
MunI	CAATTG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	2 cut(s)	73, 324
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	28, 61
Ppu21I	YACGTR	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	321
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	27, 60
Sau3AI	GATC	2 cut(s)	73, 324
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	268
Sse9I	AATT	3 cut(s)	135, 247, 253
SspMI	CTAG	2 cut(s)	12, 269
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	135, 247, 253
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	2 cut(s)	26, 59
TspDTI	ATGAA	4 cut(s)	102, 133, 216, 321
XspI	CTAG	2 cut(s)	12, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.