Rh1BG085800

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000432
Physical Location & Seq
Reverse (-)
13546250 .. 13546630
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG085800.1

Sequence Viewer

Length: 381 bp
ATGGCCATAGATAGAAATCGTAAAACATACGAAATAGGCCTCCCAATCATACAAAAAGCAGGAGTTGAGCACAAAATAGACTACATCGAATCCGAGGCTCTGCCTGTCCTTGACAATCTCTTGAGCGAACCAAAGAATGTGGGTGATTTCGATTTTGCATTTGTCGATGCTGACAAAGATAACTATTGGAATTATCATGAGAGGCTGATCAAACTGGTGAAGATTGGTGGGACTGTTATGTATGACAATACACTGTGGGGAGGGGCAGTGGCTAAGCCTGAAGACGCTGTTCCGGAGAGCAAAAGGGAGCTGAGGCGGGCTACAATTGAGTTTAACAAGTCAGTTTCGGCTGACCCTCGAGTTGAAATCTCTCATGCTTCT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

127

Amino Acids

14.38

Weight (kDa)

5.19

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 1 - 125 2.9e-42 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 300
AgsI TTSAA 1 cut(s) 365
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw21I GWGCWC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 357
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 2 cut(s) 3, 37
AsuHPI GGTGA 2 cut(s) 155, 229
AvaI CYCGRG 1 cut(s) 357
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 72
BbvCI CCTCAGC 1 cut(s) 311
BclI TGATCA 1 cut(s) 207
BlpI GCTNAGC 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 357
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 311
Bpu1102I GCTNAGC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bse1I ACTGG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 15
BseAI TCCGGA 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 93
BseJI GATNNNNATC 1 cut(s) 15
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 219
BshFI GGCC 2 cut(s) 5, 39
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 2 cut(s) 5, 39
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 292
Bsp143I GATC 1 cut(s) 207
Bsp1720I GCTNAGC 1 cut(s) 273
BspACI CCGC 1 cut(s) 316
BspANI GGCC 2 cut(s) 5, 39
BspCNI CTCAG 1 cut(s) 303
BspEI TCCGGA 1 cut(s) 292
BspHI TCATGA 1 cut(s) 196
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 235, 255
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 273, 311
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 5, 39
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 2 cut(s) 251, 273
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 196
CseI GACGC 1 cut(s) 293
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 2 cut(s) 197, 374
CviJI RGCY 9 cut(s) 5, 39, 98, 205, 272, 277, 310, 320, 350
CviKI_1 RGCY 9 cut(s) 5, 39, 98, 205, 272, 277, 310, 320, 350
DdeI CTNAG 2 cut(s) 273, 311
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 357
FaeI CATG 2 cut(s) 200, 377
FaiI YATR 7 cut(s) 8, 28, 50, 198, 239, 243, 375
FaqI GGGAC 1 cut(s) 244
FatI CATG 2 cut(s) 196, 373
FauI CCCGC 1 cut(s) 309
FbaI TGATCA 1 cut(s) 207
HaeIII GGCC 2 cut(s) 5, 39
HapII CCGG 1 cut(s) 293
HgaI GACGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 200, 377
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 155, 229
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 121, 197, 293
HpyCH4III ACNGT 2 cut(s) 235, 255
HpyCH4V TGCA 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 273, 311
Hsp92II CATG 2 cut(s) 200, 377
Kpn2I TCCGGA 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 5 cut(s) 45, 117, 200, 291, 306
LweI GCATC 1 cut(s) 157
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 2 cut(s) 232, 293
MfeI CAATTG 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 190, 324
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 6 cut(s) 50, 88, 195, 254, 306, 366
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 292
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 293
MunI CAATTG 1 cut(s) 324
NdeII GATC 1 cut(s) 207
NlaIII CATG 2 cut(s) 200, 377
PaeR7I CTCGAG 1 cut(s) 357
PagI TCATGA 1 cut(s) 196
PceI AGGCCT 1 cut(s) 39
PfeI GAWTC 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 357
SaqAI TTAA 1 cut(s) 333
Sau3AI GATC 1 cut(s) 207
SduI GDGCHC 1 cut(s) 72
SetI ASST 1 cut(s) 312
SfaNI GCATC 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 121, 357
SmoI CTYRAG 2 cut(s) 121, 357
Sse9I AATT 2 cut(s) 190, 324
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 1 cut(s) 316
StuI AGGCCT 1 cut(s) 39
TaaI ACNGT 2 cut(s) 235, 255
TaqI TCGA 4 cut(s) 87, 150, 165, 358
TasI AATT 2 cut(s) 190, 324
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 258, 273
TspRI CASTG 2 cut(s) 258, 273
XhoI CTCGAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.